BAC Information

Click to search

BAC

Clone NameB6Ng01-081B03
Chromosome10 (Build37)
Map Location 8,519,124 - 8,602,549
singlet/doubletdoublet
Overlap geneSash1
Upstream genePpil4, LOC665035, Zc3h12d, Map3k7ip2, LOC100039046, Ust, LOC100039173
Downstream geneEG666625, LOC666636, E130306M17Rik, LOC666658, LOC620417, Stxbp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081B03.bB6Ng01-081B03.g
ACCDH896025DH896026
length1,1351,010
definitionDH896025|Mus musculus domesticus DNA, BAC clone: B6Ng01-081B03, 5' end.DH896026|Mus musculus domesticus DNA, BAC clone: B6Ng01-081B03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,519,124 - 8,520,272)(8,601,530 - 8,602,549)
sequence
gaattctgccctacagggtcctggctataggagaatgtgcagctatttgt
cagtgctgagggtatattaacctgagggtatattcataacaaacacagtt
ggttagtgaagtaagagagagagaaacagacagagagagacagagtgaga
gtcagtcatggtagtccatcccaggtaatccgagtactcggaggctgagg
caggaaggtcatgaatcgtaacctgagctacagcacagtaagacagggct
ctgtctaaacacaaaacaaccaaacacaatgaaaagaaagcaacagaaga
caaactttcacaaagcactggtctgggcggttggcatgcataactcatca
tctttcaggcccatggggaccctgagaagtacgcaggtgaaggtaccaag
gcccgggtgcttagttaagggacctacccaaggccacgcaactgacacag
tactcccttgtctatgtgggttttttgcttcctgaagtttctgttaccca
tgggcaaatgtggttcaaaatatcgctatttttgagtaatcttacaaatg
aacaatttagaacattgaaataatttctgggcggagacttgggacagcaa
taaaacactatacttataaatgatagacaaaaaaacaatactgtaatgca
gtgtattagaggggagacagctgttaactgttgagttgtagcgccaaaag
gtaaactcggctcttcaaaatgtttagcctagtatttttttaataaaagc
tgggatccatgaaggcagaggtcacatcatcaccctccccactatcttca
aagtgctgggtccaatacagtgagctcatagtgttagcaatgaacaggca
atacaggtttgtagatcagcctctgaaacctgaagcctcatagcaaactt
tggcctttggctcaaaacagacacatcatttttctcatcatcaccaccat
catcatcatcatgtttgtcgtattgaaatatgtctatttccagcaccagc
atgcagttactgtaaagcagaaaagggctaccggtgcctgagctggagtt
gtgagctactggtatccctgctgaaacaactactactgctaagccatcgt
ccagctcaactctggctttgatgactcctcaacag

gaattctggtcctgcagaagctaacatttgggcaattccatcagccaaac
caaaatccaggcgcttctaaggtaatagcaaactgtgaaatgtgtgtgaa
tcctaagcacaaacatgccatttccccgccccccttggtattacagtgtg
gccaggcctagattttcaaagcatagcacctttccctatggcatgattca
acagatgtctgcccagaagtgcagaattattcaagtcccatataattgtt
ttctatttaccgtggctaccctcaggttcttgattggggacaatacttgg
ttttttgggtttctttttgtttttgtttttcgagacaaggtttctctgtg
tagccttgactgttctggaactcactctgtagaccaggctggcctcgaac
tcagaaatctgcctgcctctgcctcccaagtgctgggattaaaggtgtgt
gccaccacgcctggccaatacttggtttgaagagtgggaattgccaaatt
tatttaaatgtggtttagatatgagaagttttcttctcttttctggttta
ttttatttttatattttatttttctaggactgcttaatcttgtggcaaat
gggaatggtcatttagttttggcctctagtaactgaggacctctaaggct
aagccaggcttcatagctactaactggtaagaagtttaattaaatccttc
ttgttgccaggatcctgcaaggcacacctcccccaaccctgagcttcctc
tgtcccctgcagactctgtagtttatccccagttcctagcactgcactga
aatacccattgtgtggaaaggtcccgagtcttaagcaagttgtggaaaac
tgcagagtagacaggaatcctcagagttattgtatttagatgtcttgctg
catacttcagtttcgaaataaagcagacccagactcagtgaaagagagag
aaactaaagaatccattcctgatctttgtcagtcagtgtgggggaggaga
gttgttagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_8519124_8520272
seq2: B6Ng01-081B03.b_45_1179

seq1  GAATTCTGCCCTACAGGGTCCTGGCTATAGGAGAATGTGCAGCTATTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCCTACAGGGTCCTGGCTATAGGAGAATGTGCAGCTATTTGT  50

seq1  CAGTGCTGAGGGTATATTAACCTGAGGGTATATTCATAACAAACACAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTGAGGGTATATTAACCTGAGGGTATATTCATAACAAACACAGTT  100

seq1  GGTTAGTGAAGTAAGAGAGAGAGAAACAGACAGAGAGAGACAGAGTGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTGAAGTAAGAGAGAGAGAAACAGACAGAGAGAGACAGAGTGAGA  150

seq1  GTCAGTCATGGTAGTCCATCCCAGGTAATCCGAGTACTCGGAGGCTGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCATGGTAGTCCATCCCAGGTAATCCGAGTACTCGGAGGCTGAGG  200

seq1  CAGGAAGGTCATGAATCGTAACCTGAGCTACAGCACAGTAAGACAGGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGTCATGAATCGTAACCTGAGCTACAGCACAGTAAGACAGGGCT  250

seq1  CTGTCTAAACACAAAACAACCAAACACAATGAAAAGAAAGCAACAGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTAAACACAAAACAACCAAACACAATGAAAAGAAAGCAACAGAAGA  300

seq1  CAAACTTTCACAAAGCACTGGTCTGGGCGGTTGGCATGCATAACTCATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTTCACAAAGCACTGGTCTGGGCGGTTGGCATGCATAACTCATCA  350

seq1  TCTTTCAGGCCCATGGGGACCCTGAGAAGTACGCAGGTGAAGGTACCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAGGCCCATGGGGACCCTGAGAAGTACGCAGGTGAAGGTACCAAG  400

seq1  GCCCGGGTGCTTAGTTAAGGGACCTACCCAAGGCCACGCAACTGACACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGGTGCTTAGTTAAGGGACCTACCCAAGGCCACGCAACTGACACAG  450

seq1  TACTCCCTTGTCTATGTGGGTTTTTTGCTTCCTGAAGTTTCTGTTACCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCCTTGTCTATGTGGGTTTTTTGCTTCCTGAAGTTTCTGTTACCCA  500

seq1  TGGGCAAATGTGGTTCAAAATATCGCTATTTTTGAGTAATCTTACAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAAATGTGGTTCAAAATATCGCTATTTTTGAGTAATCTTACAAATG  550

seq1  AACAATTTAGAACATTGAAATAATTTCTGGGCGGAGACTTGGGACAGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTTAGAACATTGAAATAATTTCTGGGCGGAGACTTGGGACAGCAA  600

seq1  TAAAACACTATACTTATAAATGATAGACAAAAAAACAATACTGTAATGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACACTATACTTATAAATGATAGACAAAAAAACAATACTGTAATGCA  650

seq1  GTGTATTAGAGGGGAGACAGCTGTTAACTGTTGAGTTGTAGCGCCAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTAGAGGGGAGACAGCTGTTAACTGTTGAGTTGTAGCGCCAAAAG  700

seq1  GTAAACTCGGCTCTTCAAAATGTTTAGCCTAGTATTTTTTTAATAAAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTCGGCTCTTCAAAATGTTTAGCCTAGTATTTTTTTAATAAAAGC  750

seq1  TGGGATCCATGAAGGCAGAGGTCACATCATCACCCTCCCCACTATCTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCCATGAAGGCAGAGGTCACATCATCACCCTCCCCACTATCTTCA  800

seq1  AAGTGCTGGGTCCAATACAGTGAGCTCATAGTGTTAGCAATGAACAGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGGGTCCAATACAGTGAGCTCATAGTGTTAGCAATGAACAGGCA  850

seq1  ATACAGGTTTGTAGATCAGCCTCTGAAACCTGAAGCCTCATAGCAAACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGTTTGTAGATCAGCCTCTGAAACCTGAAGCCTCATAGCAAACTT  900

seq1  TGGCCTTTGGCTCAAAAACAGACACATCATTTTTCTCATCATCACCACCA  950
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTTGGCTC-AAAACAGACACATCATTTTTCTCATCATCACCACCA  949

seq1  TCATCATCATCATGTTTGTCGTATTGAAATATGTCTATTTCCAGCACCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATCATCATGTTTGTCGTATTGAAATATGTCTATTTCCAGCACCAG  999

seq1  CATGCAGTTAACCTGTAAAGCCAGAAAAGGGCTACCGGTGCCCTGGAGCT  1050
      ||||||||||  |||||||| |||||||||||||||||||||   |||||
seq2  CATGCAGTTA--CTGTAAAG-CAGAAAAGGGCTACCGGTGCC--TGAGCT  1044

seq1  GGAGTTGTGAGCTACCTGGTATCCCTGCTGGAAACAACTACTAACTGCTA  1100
      |||||||||||||| |||||||||||||| |||||||||||| |||||||
seq2  GGAGTTGTGAGCTA-CTGGTATCCCTGCT-GAAACAACTACT-ACTGCTA  1091

seq1  AGCCCATCGTCCCAGCCTCAAACTCTGGCTTTTGATGACTCCTCAACAG  1149
      || ||||||| |||| ||| ||||||||| |||||||||||||||||||
seq2  AG-CCATCGT-CCAG-CTC-AACTCTGGC-TTTGATGACTCCTCAACAG  1135


seq1: chr10_8601530_8602549
seq2: B6Ng01-081B03.g_71_1080 (reverse)

seq1  CACTAACAACTCTCCTCCCCCACACTTGACCTGACAAAGAATCAGGAATG  50
      ||||||||||||||||||||||||| ||| ||||||||| ||||||||||
seq2  CACTAACAACTCTCCTCCCCCACAC-TGA-CTGACAAAG-ATCAGGAATG  47

seq1  GATTCTTTAGTTTCTTCTTCTC-CTTTCACTGAAGGTCTGGGTTCTGCTT  99
      ||||||||||||||    |||| ||||||||||  ||||||| |||||||
seq2  GATTCTTTAGTTTC----TCTCTCTTTCACTGA--GTCTGGG-TCTGCTT  90

seq1  TATTTCGAAACTGAAGTATGCAGCAAGACATCTAAATACAATAACTCTGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCGAAACTGAAGTATGCAGCAAGACATCTAAATACAATAACTCTGA  140

seq1  GGATTCCTGTCTACTCTGCAGTTTTCCACAACTTGCTTAAGACTCGGGAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCCTGTCTACTCTGCAGTTTTCCACAACTTGCTTAAGACTCGGGAC  190

seq1  CTTTCCACACAATGGGTATTTTCAGTGCAGTGCTAGGAACTGGGGATAAA  249
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTTTCCACACAATGGGTA-TTTCAGTGCAGTGCTAGGAACTGGGGATAAA  239

seq1  CTACAGAGTCTGCAGGGGACAGAGGAAGCTCAGGGTTGGGGGAGGTGTGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAGTCTGCAGGGGACAGAGGAAGCTCAGGGTTGGGGGAGGTGTGC  289

seq1  CTTGCAGGATCCTGGCAACAAGAAGGATTTAATTAAACTTCTTACCAGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGGATCCTGGCAACAAGAAGGATTTAATTAAACTTCTTACCAGTT  339

seq1  AGTAGCTATGAAGCCTGGCTTAGCCTTAGAGGTCCTCAGTTACTAGAGGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTATGAAGCCTGGCTTAGCCTTAGAGGTCCTCAGTTACTAGAGGC  389

seq1  CAAAACTAAATGACCATTCCCATTTGCCACAAGATTAAGCAGTCCTAGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTAAATGACCATTCCCATTTGCCACAAGATTAAGCAGTCCTAGAA  439

seq1  AAATAAAATATAAAAATAAAATAAACCAGAAAAGAGAAGAAAACTTCTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATATAAAAATAAAATAAACCAGAAAAGAGAAGAAAACTTCTCA  489

seq1  TATCTAAACCACATTTAAATAAATTTGGCAATTCCCACTCTTCAAACCAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAACCACATTTAAATAAATTTGGCAATTCCCACTCTTCAAACCAA  539

seq1  GTATTGGCCAGGCGTGGTGGCACACACCTTTAATCCCAGCACTTGGGAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGGCCAGGCGTGGTGGCACACACCTTTAATCCCAGCACTTGGGAGG  589

seq1  CAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGA  639

seq1  GTTCCAGAACAGTCAAGGCTACACAGAGAAACCTTGTCTCGAAAAACAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGAACAGTCAAGGCTACACAGAGAAACCTTGTCTCGAAAAACAAA  689

seq1  AACAAAAAGAAACCCAAAAAACCAAGTATTGTCCCCAATCAAGAACCTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAGAAACCCAAAAAACCAAGTATTGTCCCCAATCAAGAACCTGA  739

seq1  GGGTAGCCACGGTAAATAGAAAACAATTATATGGGACTTGAATAATTCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGCCACGGTAAATAGAAAACAATTATATGGGACTTGAATAATTCTG  789

seq1  CACTTCTGGGCAGACATCTGTTGAATCATGCCATAGGGAAAGGTGCTATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTGGGCAGACATCTGTTGAATCATGCCATAGGGAAAGGTGCTATG  839

seq1  CTTTGAAAATCTAGGCCTGGCCACACTGTAATACCAAGGGGGGCGGGGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAAATCTAGGCCTGGCCACACTGTAATACCAAGGGGGGCGGGGAA  889

seq1  ATGGCATGTTTGTGCTTAGGATTCACACACATTTCACAGTTTGCTATTAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATGTTTGTGCTTAGGATTCACACACATTTCACAGTTTGCTATTAC  939

seq1  CTTAGAAGCGCCTGGATTTTGGTTTGGCTGATGGAATTGCCCAAATGTTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAGCGCCTGGATTTTGGTTTGGCTGATGGAATTGCCCAAATGTTA  989

seq1  GCTTCTGCAGGACCAGAATTC  1020
      |||||||||||||||||||||
seq2  GCTTCTGCAGGACCAGAATTC  1010


| Home | SequenceCutter | Blast | Download |