BAC Information

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BAC

Clone NameB6Ng01-081J24
Chromosome10 (Build37)
Map Location 128,223,039 - 128,336,483
singlet/doubletdoublet
Overlap geneMmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11
Upstream geneRdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655
Downstream geneCd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081J24.bB6Ng01-081J24.g
ACCDH896422DH896423
length1,048692
definitionDH896422|Mus musculus domesticus DNA, BAC clone: B6Ng01-081J24, 5' end.DH896423|Mus musculus domesticus DNA, BAC clone: B6Ng01-081J24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,223,039 - 128,224,074)(128,335,954 - 128,336,483)
sequence
gaattcactctgtatatcaggctggccttgaactcatagtgatccacctg
cctctatctcttgagtgctgggattaaaggtgttagatatagccaccatg
catggctatatctaacattttttaatgtaagtccttctcttccacacagt
actggaggcaccctctaagctctggcttccagtcaccaccttcatttgtc
tattaagacctcccaggttaggtactgttaaaacatggacttgccctgag
gtgggcactagcagtcagtggtgagccaagcagtctgacccttcagtctt
agcacagcgagttctcagctctatgatgtgaactacacaactacctcagc
tctgtactgtcactcagacctgtcctgtctttgtccctctgccatctttt
actccctctgattcttagccaaactttagagatcaactcaagttatcctt
ctcagctggcttcctcatgacattttacccactgcctggcacccagacct
ctattccaggtgtttgggtctacctcagattatcttggagctctccttgg
agcacctgtgggtgttttattttgttgttgttgttgatcttggtgtgtgt
ttatctgtcttctatctatctacatatctatctatctatctatctatcta
tctatctatctatctatctatctatctatctatctttcctatcatctatc
ctcaatctctcacctacctatctacctttcatctatctatctattttatc
tatctatctatctatctatctatctatctatctatcatctaatctattat
caatcatctatcatctatctatccatatatcacctattatctaccatcta
ttttttttttttgagatagcatctcagtgttttcacggagctaaggttgc
tctctgtctagatatttagccaaggatgatatcaaacatctgcttcttcc
tgcctcttaccttcccaagcactgggattgcatgaatgtgtcaccacacc
tatcctttcgcagtgattgggtatgggaaaaagacttcctgcatgcta
gaattccaggacagccagggctacacagagaaaccctgtctcgaaaaaca
aaacaaaacaaaacaaaacaaaacaaaaaaaaaaaaaaaaacaaaaaaaa
aaaaaaaagaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaagga
aaggaaaggaaagaactcactatgtagaccaggctggcctcaaactcata
gatatctgcctttctctgcctccctcccaagtgttagaattaaaggtgtg
caccactatgcctgggcatattatctttagacttgtgggaattaaattga
ctttgcttgctgagcagtggtggcacacacctttgatcccaaatactcca
ggggctgaggcaggtggatctttgtgaatttgaggccagcctggtctaca
gagtgagttctagaacagccagagctatacagagaaaccctgtatccaaa
aaaaaaaattgtatttaattaattagttaattaattaaaaataaaacaac
tttgctctgatgggctgagaaggtggctcatttggtggatagaattgact
gctctcccagaggacccatgtgcagtctcacaccaggtggctcacaactg
tcactccatctacagggggatctgacacccttttctgcattccatgggcg
ccttcatctttctgctgagacagagcacagatgagcatttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_128223039_128224074
seq2: B6Ng01-081J24.b_48_1095

seq1  GAATTCACTCTGTATATCAGGCTGGCCTTGAACTCATAGTGATCCACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTATATCAGGCTGGCCTTGAACTCATAGTGATCCACCTG  50

seq1  CCTCTATCTCTTGAGTGCTGGGATTAAAGGTGTTAGATATAGCCACCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATCTCTTGAGTGCTGGGATTAAAGGTGTTAGATATAGCCACCATG  100

seq1  CATGGCTATATCTAACATTTTTTAATGTAAGTCCTTCTCTTCCACACAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTATATCTAACATTTTTTAATGTAAGTCCTTCTCTTCCACACAGT  150

seq1  ACTGGAGGCACCCTCTAAGCTCTGGCTTCCAGTCACCACCTTCATTTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGGCACCCTCTAAGCTCTGGCTTCCAGTCACCACCTTCATTTGTC  200

seq1  TATTAAGACCTCCCAGGTTAGGTACTGTTAAAACATGGACTTGCCCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGACCTCCCAGGTTAGGTACTGTTAAAACATGGACTTGCCCTGAG  250

seq1  GTGGGCACTAGCAGTCAGTGGTGAGCCAAGCAGTCTGACCCTTCAGTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCACTAGCAGTCAGTGGTGAGCCAAGCAGTCTGACCCTTCAGTCTT  300

seq1  AGCACAGCGAGTTCTCAGCTCTATGATGTGAACTACACAACTACCTCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGCGAGTTCTCAGCTCTATGATGTGAACTACACAACTACCTCAGC  350

seq1  TCTGTACTGTCACTCAGACCTGTCCTGTCTTTGTCCCTCTGCCATCTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACTGTCACTCAGACCTGTCCTGTCTTTGTCCCTCTGCCATCTTTT  400

seq1  ACTCCCTCTGATTCTTAGCCAAACTTTAGAGATCAACTCAAGTTATCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTCTGATTCTTAGCCAAACTTTAGAGATCAACTCAAGTTATCCTT  450

seq1  CTCAGCTGGCTTCCTCATGACATTTTACCCACTGCCTGGCACCCAGACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTGGCTTCCTCATGACATTTTACCCACTGCCTGGCACCCAGACCT  500

seq1  CTATTCCAGGTGTTTGGGTCTACCTCAGATTATCTTGGAGCTCTCCTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCAGGTGTTTGGGTCTACCTCAGATTATCTTGGAGCTCTCCTTGG  550

seq1  AGCACCTGTGGGTGTTTTATTTTGTTGTTGTTGTTGATCTTGGTGTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTGTGGGTGTTTTATTTTGTTGTTGTTGTTGATCTTGGTGTGTGT  600

seq1  TTATCTGTCTTCTATCTATCTACATATCTATCTATCTATCTATCTATCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGTCTTCTATCTATCTACATATCTATCTATCTATCTATCTATCTA  650

seq1  TCTATCTATCTATCTATCTATCTATCTATC-----TTCCTATCATCTATC  695
      ||||||||||||||||||||||||||||||     |||||||||||||||
seq2  TCTATCTATCTATCTATCTATCTATCTATCTATCTTTCCTATCATCTATC  700

seq1  CTCAATCTCTCACCTACCTATCTACCTTTCATCTATCTATCTA-TCTATC  744
      ||||||||||||||||||||||||||||||||||||||||||| | ||||
seq2  CTCAATCTCTCACCTACCTATCTACCTTTCATCTATCTATCTATTTTATC  750

seq1  TATCTATCTATCTATCTATCTATCTATCTATCTATCATCTAATCTATTAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTATCTATCTATCTATCTATCTATCTATCATCTAATCTATTAT  800

seq1  CAATCATCTATCATCTATCTATCCATATATCACCTATTATCTACCATCTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATCTATCATCTATCTATCCATATATCACCTATTATCTACCATCTA  850

seq1  --TTTTTTTTTTGAGATAGCATCTCAGTG-TTTCACGGAGCTAAGGTTGC  891
        ||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTTTTTTTTTTGAGATAGCATCTCAGTGTTTTCACGGAGCTAAGGTTGC  900

seq1  TCTCTGTCTAGATATTTAGCCAAGGATGATATCAAACATCTGC-TCCTCC  940
      ||||||||||||||||||||||||||||||||||||||||||| || |||
seq2  TCTCTGTCTAGATATTTAGCCAAGGATGATATCAAACATCTGCTTCTTCC  950

seq1  TGCCTC-TACC-TCCCAAGCACTGGGATTGCAGGAATGTGTCACCACACC  988
      |||||| |||| |||||||||||||||||||| |||||||||||||||||
seq2  TGCCTCTTACCTTCCCAAGCACTGGGATTGCATGAATGTGTCACCACACC  1000

seq1  TATCCTTACGCAGTGA-TGGGGATGGGAAAGAGAACTTCCTGCATGCTA  1036
      ||||||| |||||||| |||| |||||||| || |||||||||||||||
seq2  TATCCTTTCGCAGTGATTGGGTATGGGAAAAAG-ACTTCCTGCATGCTA  1048

seq1: chr10_128335954_128336483
seq2: B6Ng01-081J24.g_227_759 (reverse)

seq1  TTAAATGCTCATCTGTGCTCTGTCTCAGCAGAAAGATGAAGGCGCCCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGCTCATCTGTGCTCTGTCTCAGCAGAAAGATGAAGGCGCCCATG  50

seq1  GAATGCAG-AAAGGGTGTCAGAT-CCCCTGTAGATGGAGTGACAGTTGTG  98
      |||||||| |||||||||||||| ||||||||||||||||||||||||||
seq2  GAATGCAGAAAAGGGTGTCAGATCCCCCTGTAGATGGAGTGACAGTTGTG  100

seq1  AGCCACCTGGTGTGAGACTGCACATGGGTCCTCTGGGAGAGCAGTCAATT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCTGGTGTGAGACTGCACATGGGTCCTCTGGGAGAGCAGTCAATT  150

seq1  CTATCCACC-AATGAGCCACCTTCTCAGCCCATCAGAGCAAAGTTGTTTT  197
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCACCAAATGAGCCACCTTCTCAGCCCATCAGAGCAAAGTTGTTTT  200

seq1  ATTTTTAATTAATTAACTAATTAATTAAATACAATTTTTTTTTTTGGATA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAATTAATTAACTAATTAATTAAATACAATTTTTTTTTTTGGATA  250

seq1  CAGGGTTTCTCTGTATAGCTCTGGCTGTTCTAGAACTCACTCTGTAGACC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTCTCTGTATAGCTCTGGCTGTTCTAGAACTCACTCTGTAGACC  300

seq1  AGGCTGGCCTCAAATTCACAAAGATCCACCTGCCTCAGCCCCTGGAGTAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCCTCAAATTCACAAAGATCCACCTGCCTCAGCCCCTGGAGTAT  350

seq1  TTGGGATCAAAGGTGTGTGCCACCACTGCTCAGCAAGCAAAGTCAATTTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATCAAAGGTGTGTGCCACCACTGCTCAGCAAGCAAAGTCAATTTA  400

seq1  ATTCCCACAAGTCTAAAGATAATATGCCCAGGCATAGTGGTGCACACCTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCACAAGTCTAAAGATAATATGCCCAGGCATAGTGGTGCACACCTT  450

seq1  TAATTCTAACACTTGGGAGGGAGGCAGAGAAAGGCAGATATCTATGAGTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTAACACTTGGGAGGGAGGCAGAGAAAGGCAGATATCTATGAGTT  500

seq1  TGAGGCCAGCCTGGTCTACATAGTGAGTTCTTT  530
      |||||||||||||||||||||||||||||||||
seq2  TGAGGCCAGCCTGGTCTACATAGTGAGTTCTTT  533