BAC Information

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BAC

Clone NameB6Ng01-082B02
Chromosome10 (Build37)19 (Build37)
Map Location 88,379,336 - 88,380,18149,054,383 - 49,054,929
singlet/doubletsingletsinglet
Overlap geneSlc5a8
Upstream geneIgf1, Tyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20
Downstream geneTmem16d, Gas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, Anks1b, LOC100043039
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082B02.bB6Ng01-082B02.g
ACCDH896732DH896733
length847898
definitionDH896732|Mus musculus domesticus DNA, BAC clone: B6Ng01-082B02, 5' end.DH896733|Mus musculus domesticus DNA, BAC clone: B6Ng01-082B02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(88,379,336 - 88,380,181)(49,054,383 - 49,054,929)
sequence
gaattcatttggatgaaggatccagtacacttctcctaatatactgtctg
attcattcattctgttctgcttggcttcttgctggacaagtcaccatgtc
gctgctctttcatggtcttaaaactgtaaactacacatgtttatggggca
taatatgtttgaatacatgtttgtatttcactatgttcaaatgtggttaa
gcatgtgtctcctcaagtgtttatgattttgtagtgatgaaaacattcag
aatcgctcactgtagctctgtagagacatgcagtccattatcactttcca
tcttcacagtcttgagcatcatgccatcataataattataaaattattgt
tcagtacccatgggacaactgtttgcttttagccgagtcttcaaactaga
cccttgattactatggttactaggttactaagagcatatgtatctttgag
cattatttgcattccctcatgattcatatttgcaactgtttttcagtctc
atggctttcgtatctctgtatcaaagaaaagattcagtcaccccaaaaga
ctttaaatctttctctacaccattggatcaattattttaaatctagttct
tttcaatctaactacacccatatcagatcagatcagaattgctcatggat
tttttcattatatatggccgttttgcagttcttatccaccatcttgtttg
gaggaatatttagagaccacgaaagcataaaagagtgttgtgatggatca
gaaaaaggctgagaatgggtgttttcatttatgcattcatagagatgccc
caatgggtttcatgactcttttttttttggtgttgtgtgtgtgtgtg
gaattcctggtctttccaagacttttatcatgaatgggtgttggatcttg
tcgaatgctttttccgcatctcacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggatcaccttgatggattttcatatattaaacc
atccttgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgttttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagggaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaattgtggcttcatagaatgagttg
ggtagagttccctctacttctattttgtggaatagtttgtgcagaactgg
gattagatcttctttgaaggtctggtagaactctgcactaaacccatctg
gtcctgggctttttttggctgggaaattattaatgactgcttctatttcc
ttaggggatatgggactgtttagatcgttaacttgatcctgatttaactg
tggtacctggtatctgtctagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tctttcaggatctgttgttatgtctcccttttcatttctgatttttgtta
atttaggatgttgtccctgtgctctctagtgagtctagctaagggtttat
ctatcttgttgattttctcatagaaccaactcctcatttggttaattctt
tgaatagttcttcttgtttccacttggttgattcaccccctgagttgaat
atttcctgcagtctactcctctttggggattttcttccttttttctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_88379336_88380181
seq2: B6Ng01-082B02.b_44_890

seq1  GAATTCATTTGGATGAAGGATCCAGTACACTTCTCCTAATATACTGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGGATGAAGGATCCAGTACACTTCTCCTAATATACTGTCTG  50

seq1  ATTCATTCATTCTGTTCTGCTTGGCTTCTTGCTGGACAAGTCACCATGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTCATTCTGTTCTGCTTGGCTTCTTGCTGGACAAGTCACCATGTC  100

seq1  GCTGCTCTTTCATGGTCTTAAAACTGTAAACTACACATGTTTATGGGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCTTTCATGGTCTTAAAACTGTAAACTACACATGTTTATGGGGCA  150

seq1  TAATATGTTTGAATACATGTTTGTATTTCACTATGTTCAAATGTGGTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGTTTGAATACATGTTTGTATTTCACTATGTTCAAATGTGGTTAA  200

seq1  GCATGTGTCTCCTCAAGTGTTTATGATTTTGTAGTGATGAAAACATTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGTCTCCTCAAGTGTTTATGATTTTGTAGTGATGAAAACATTCAG  250

seq1  AATCGCTCACTGTAGCTCTGTAGAGACATGCAGTCCATTATCACTTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGCTCACTGTAGCTCTGTAGAGACATGCAGTCCATTATCACTTTCCA  300

seq1  TCTTCACAGTCTTGAGCATCATGCCATCATAATAATTATAAAATTATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACAGTCTTGAGCATCATGCCATCATAATAATTATAAAATTATTGT  350

seq1  TCAGTACCCATGGGACAACTGTTTGCTTTTAGCCGAGTCTTCAAACTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACCCATGGGACAACTGTTTGCTTTTAGCCGAGTCTTCAAACTAGA  400

seq1  CCCTTGATTACTATGGTTACTAGGTTACTAAGAGCATATGTATCTTTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGATTACTATGGTTACTAGGTTACTAAGAGCATATGTATCTTTGAG  450

seq1  CATTATTTGCATTCCCTCATGATTCATATTTGCAACTGTTTTTCAGTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTGCATTCCCTCATGATTCATATTTGCAACTGTTTTTCAGTCTC  500

seq1  ATGGCTTTCGTATCTCTGTATCAAAGAAAAGATTCAGTCACCCCAAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTTCGTATCTCTGTATCAAAGAAAAGATTCAGTCACCCCAAAAGA  550

seq1  CTTTAAATCTTTCTCTACACCATTGGATCAATTATTTTAAATCTAGTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAATCTTTCTCTACACCATTGGATCAATTATTTTAAATCTAGTTCT  600

seq1  TTTCAATCTAACTACACCCATATCAGATCAGATCAGAATTGCTCATGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATCTAACTACACCCATATCAGATCAGATCAGAATTGCTCATGGAT  650

seq1  TTTTTCATTATATATGGCCGTTTTGCAGTTCTTATCCACCATCTTGTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATTATATATGGCCGTTTTGCAGTTCTTATCCACCATCTTGTTTG  700

seq1  GAGGAATATTTAGAGACCACGAAAGCATAAAAGAGTGTTGTGATGGATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATATTTAGAGACCACGAAAGCATAAAAGAGTGTTGTGATGGATCA  750

seq1  GAAAAAGGCTGAGAATGGGTGTTTTCATTTATGCATTCATAGAGATGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGGCTGAGAATGGGTGTTTTCATTTATGCATTCATAGAGATGCCC  800

seq1  CAAT-GGTTTCATGACTC-TTTTTTTTTGGTGTGTGTGTGTGTGTGTG  846
      |||| ||||||||||||| |||||||||||||| ||||||||||||||
seq2  CAATGGGTTTCATGACTCTTTTTTTTTTGGTGT-TGTGTGTGTGTGTG  847

seq1: chr19_49054383_49054929
seq2: B6Ng01-082B02.g_419_965 (reverse)

seq1  CTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACTGCAGGAAAT  50
      |||| ||||||||||| ||| || || |||||||||||||||||||||||
seq2  CTAG-AAAAAAGGAAG-AAAATCCCCAAAGAGGAGTAGACTGCAGGAAAT  48

seq1  AATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTC  100
      | || ||||||||||   ||||||||||||||||||||||||||||||||
seq2  ATTC-AACTCAGGGGGTGAATCAACCAAGTGGAAACAAGAAGAACTATTC  97

seq1  AAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATA  150
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  AAAGAATTAACCAAATGAGGAGTTGGTTCTATGAGAAAATCAACAAGATA  147

seq1  GATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCT-AA  199
      ||||||||||||||||||||||||| || |||||||||||| ||||| ||
seq2  GATAAACCCTTAGCTAGACTCACTAGAGAGCACAGGGACAACATCCTAAA  197

seq1  TTAAC-AAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTG-AAG  247
      ||||| |||||||||||||||||||||||||||||||||||||||| |||
seq2  TTAACAAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAAG  247

seq1  AAATCCAAAACACCATCAGATCCTTCTACAAAAGGTTATACTCAACAAAA  297
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAA  297

seq1  CTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACC  347
      |||||||||||||| ||||||||||||||||| |||||||||||||||||
seq2  CTGGAAAACCTGGACGAAATGGACAAATTTCTAGACAGATACCAGGTACC  347

seq1  AAAGTTGAGTCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTA  397
      | |||| | ||||||||||||| || ||||||||||||||||||| ||||
seq2  ACAGTTAAATCAGGATCAAGTTAACGATCTAAACAGTCCCATATCCCCTA  397

seq1  AAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGA  447
      | |||||||||||||| ||||||| | |||||||||||||||||||||||
seq2  AGGAAATAGAAGCAGTCATTAATAATTTCCCAGCCAAAAAAAGCCCAGGA  447

seq1  CCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAAT  497
      ||||| |||||||||||||||||||| |||||||||||||||||||||||
seq2  CCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGATCTAAT  497

seq1  TCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTAC  547
       |||||||||||||||||||| ||||||||||||||||| || |||||||
seq2  CCCAGTTCTGCACAAACTATTCCACAAAATAGAAGTAGAGGGAACTCTAC  547