BAC Information

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BAC

Clone NameB6Ng01-083A14
Chromosome4 (Build37)10 (Build37)
Map Location 145,940,599 - 145,941,260127,977,324 - 127,978,124
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461
Downstream geneLOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083A14.bB6Ng01-083A14.g
ACCDH897410DH897411
length1,024799
definitionDH897410|Mus musculus domesticus DNA, BAC clone: B6Ng01-083A14, 5' end.DH897411|Mus musculus domesticus DNA, BAC clone: B6Ng01-083A14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(145,940,599 - 145,941,260)(127,977,324 - 127,978,124)
sequence
gaattcaatgctcgctgctgcctaaaactgagtatattggtgcatgccca
taatcccaggatttggggtaagtaaagaagggccgtcctgtatgacagag
caagttggaggacagcctgaatacataaaaggagaaggaggggaccaggt
gtgatggctgtccttgtgcatgtataacatcgatgtagggaaggtgaaca
caggtggatccctcggcttgctgaccacctggcctagtgtacttagcaag
ttccagaccagtgagaaaccctgtctcgaccattgagagacccagtctca
acaacctggcatctgagattgtcctctgacctgtataggcggtggtggag
gcatatttgctttcccccccattccagatgtagacaggttgataaccaag
aataaccatcacagaaggtgttcaaaacgaaggaaatgtttaaagataaa
ccacattctggtattctagccagttttatgtgtaataattactaacttgc
aagtatttgggaaaactggagaaacatttactcctccaaactgtcttatt
atacttgctaaacaaagcagtgtttatttatttttcataatatacttagt
accaaattggcttataagtaagtgctcatgtaaactaaagttgtaaactt
tgacccagatttattttggctcataataaaactgaaatttaaaggaacaa
aataaaggtaaatgacaaaaagtctattttaattaatgcaaccacatagc
taaaatagagacagctaatggctctaaatctctttggggaacaattaact
tgagttttgagttagaattttaaatctgcttttagggacaagatatacat
actcacatattctggtctagatgctatctccttgatccttattttatttc
tggttctaccacaggcccaaattgttgaaactatatgaactttagaagtg
gttgctcctgctgcagatatgttcttcctatgaacattgcacttccttga
atactgaactgtactcaaaggtca
gaattccctggaattggagtaacaccgttatgagctgctctgtgggtgtt
tggaactgaattgccgttctctacttcagcagcgagagattttaatcctt
gagccatttctccaaggctcaatacccaagcccacctacaatgtatgact
ttttcactgagaagaaagcagttcccaatcccctacacacacacactccc
aaccatctaactgctggacacaacctgccaggtttcatctctgagctcat
gggcttaccgtctgttttgtgtggaaccatatataaaatatcagcacaag
gctgtcttgttgatgaagacaataaataaataaataaataaataaataga
taagtaaataaataaaactaattcacactcttaagcacaaaacaaggtta
gtgtgcaagccagggagaagcaaacatctgcttctaaactgtggatggct
gctacttcaccttcgaatcttcactgttcctgcagcctgcatcttttatg
ggctggagagatggatcatcatgtaaaaacactgactgctcttctgaagg
tcatgagttcaaatcccttctaccacgtggtggctcacaatcatctgtaa
tgagatctgactccctcttctggcgtgtctgatgatacctacagtgtgtt
taaatatgaaaacaattttggaaaagaagtgatattatgcctgctcatat
tatgaccctgcctccttgaccactgaaccagaacaacactcacaaatgcc
aaatcatccctcctgtctttaaaaatacgaatgaatgtatgttagacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145940599_145941260
seq2: B6Ng01-083A14.b_413_1066 (reverse)

seq1  TGACCTTTGGAGTACAGTTCAGTATTTCAAGGAAGTGCAATTGTTCATAG  50
      |||||||| ||||||||||||||| ||||||||||||||| |||||||||
seq2  TGACCTTT-GAGTACAGTTCAGTA-TTCAAGGAAGTGCAA-TGTTCATAG  47

seq1  GAAGAACATATCCTGCAGCAGGAGCAACCACCTCTTAAAGTTCATATATG  100
      ||||||||||| ||||||||||||||||||| || ||||||||||||| |
seq2  GAAGAACATAT-CTGCAGCAGGAGCAACCACTTC-TAAAGTTCATATA-G  94

seq1  TCTCAAGCAATTTGGGCCTTGTGGTAGAACCAGAACTAAAATAAGGATCA  150
      | |||| ||||||||||| |||||||||||||||| ||||||||||||||
seq2  TTTCAA-CAATTTGGGCC-TGTGGTAGAACCAGAAATAAAATAAGGATCA  142

seq1  AGGAGATAGCATCTAGACCAGAACTATGTGAGTATGTATATCTTGTCCCT  200
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGGAGATAGCATCTAGACCAGAA-TATGTGAGTATGTATATCTTGTCCCT  191

seq1  AAAAGCAGATTTAAAATTCTAACTCAAAAACTCAAGTTAATTGTTCCCCA  250
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAAAGCAGATTTAAAATTCTAACTC-AAAACTCAAGTTAATTGTTCCCCA  240

seq1  AAGAGATTTAGAGCCATTAGCTGTCTCTATTTTAGCTATGTGGTTGCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATTTAGAGCCATTAGCTGTCTCTATTTTAGCTATGTGGTTGCATT  290

seq1  AATT-AAATAGACTTTTTGTCATTTACCTTTATTTTGTTCCTTTAAATTT  349
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAATAGACTTTTTGTCATTTACCTTTATTTTGTTCCTTTAAATTT  340

seq1  CAGTTTTATTATGAGCCAAAATAAATCTGGGTC-AAGTTTACAACTTTAG  398
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAGTTTTATTATGAGCCAAAATAAATCTGGGTCAAAGTTTACAACTTTAG  390

seq1  TTTACATGAGCACTTACTTATAAGCCAATTTGGTACTAAGTATATTATGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATGAGCACTTACTTATAAGCCAATTTGGTACTAAGTATATTATGA  440

seq1  AAAATAAATAAACACTGCTTTGTTTAGCAAGTATAATAAGACAGTTTGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATAAACACTGCTTTGTTTAGCAAGTATAATAAGACAGTTTGGA  490

seq1  GGAGTAAATGTTTCTCCAGTTTTCCCAAATACTTGCAAGTTAGTAATTAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAAATGTTTCTCCAGTTTTCCCAAATACTTGCAAGTTAGTAATTAT  540

seq1  TACACATAAAACTGGCTAGAATACCAGAATGTGGTTTATCTTTAAACATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATAAAACTGGCTAGAATACCAGAATGTGGTTTATCTTTAAACATT  590

seq1  TCCTTCGTTTTGAACACCTTCTGTGATGGTTATTCTTGGTTATCAACCTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCGTTTTGAACACCTTCTGTGATGGTTATTCTTGGTTATCAACCTG  640

seq1  TCTACATCTGGAAT  662
      ||||||||||||||
seq2  TCTACATCTGGAAT  654

seq1: chr10_127977324_127978124
seq2: B6Ng01-083A14.g_69_867

seq1  GAATTCCCTGGAATTGGAGTAACACAGTTATGAGCTGCTCTGTGGGTGTT  50
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAATTCCCTGGAATTGGAGTAACACCGTTATGAGCTGCTCTGTGGGTGTT  50

seq1  TGGAACTGAATTTAGGTTCTCTACAAGAGCAGCAAGTGCTTTTAATCCTT  100
      ||||||||||||   |||||||||   |||||| || | |||||||||||
seq2  TGGAACTGAATTGCCGTTCTCTACTTCAGCAGCGAGAGATTTTAATCCTT  100

seq1  GAGCCATTTCTCCAAGGCTCAATACCCAAGCCCACAGACAATGCATGACT  150
      |||||||||||||||||||||||||||||||||||  |||||| ||||||
seq2  GAGCCATTTCTCCAAGGCTCAATACCCAAGCCCACCTACAATGTATGACT  150

seq1  TAAGCACTGAGAAGAAAGCAGTTCCCAATCCCCTACACACACACACACAC  200
      |   |||||||||||||||||||||||||||||||||||||||||| | |
seq2  TTTTCACTGAGAAGAAAGCAGTTCCCAATCCCCTACACACACACACTCCC  200

seq1  AACCATCTAACTGCTGGACACAGCCAGCCAGGTTTCATCACTGAGCTCAT  250
      |||||||||||||||||||||| || ||||||||||||| ||||||||||
seq2  AACCATCTAACTGCTGGACACAACCTGCCAGGTTTCATCTCTGAGCTCAT  250

seq1  GGGCTTACAGTCAGTTTTGTGTTGAACCAAATAGAAAATATCAGCACAAG  300
      |||||||| ||| ||||||||| |||||| ||| ||||||||||||||||
seq2  GGGCTTACCGTCTGTTTTGTGTGGAACCATATATAAAATATCAGCACAAG  300

seq1  GCTGTCTTAATGATGAAGACAATAAATAAATAAATAAATAAATAAATAAA  350
      ||||||||  |||||||||||||||||||||||||||||||||||||| |
seq2  GCTGTCTTGTTGATGAAGACAATAAATAAATAAATAAATAAATAAATAGA  350

seq1  TAAATAAATAAATAAAACTAATTCACACTCTTAAGCACAGAACAAGGTTA  400
      ||| ||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAAGTAAATAAATAAAACTAATTCACACTCTTAAGCACAAAACAAGGTTA  400

seq1  GTGTGCAAGCCACAGAGAAGCAAACATCTGCTTCTAAACTAGTGATGGCT  450
      ||||||||||||  ||||||||||||||||||||||||||   |||||||
seq2  GTGTGCAAGCCAGGGAGAAGCAAACATCTGCTTCTAAACTGTGGATGGCT  450

seq1  GCTACATCACCAGTGAAGCTTCAGTGTTCCTGCAGCCTGCATCTTTTATG  500
      ||||| |||||   ||| ||||| ||||||||||||||||||||||||||
seq2  GCTACTTCACCTTCGAATCTTCACTGTTCCTGCAGCCTGCATCTTTTATG  500

seq1  GGCTGGAGAGATGGCTCAGCAGTTAAGAGCACTGACTGCTCTTCTGAAGG  550
      |||||||||||||| ||| ||  ||| | |||||||||||||||||||||
seq2  GGCTGGAGAGATGGATCATCATGTAAAAACACTGACTGCTCTTCTGAAGG  550

seq1  TCATGAGTTCAAATCCCAGCAACCACGTGGTGGCTCACAATCATCTGTAA  600
      |||||||||||||||||  | |||||||||||||||||||||||||||||
seq2  TCATGAGTTCAAATCCCTTCTACCACGTGGTGGCTCACAATCATCTGTAA  600

seq1  TGAGATCTGACGCCCTCTTCTGGTGTGTCTGAGGATACCTACAGTGTACT  650
      ||||||||||| ||||||||||| |||||||| ||||||||||||||  |
seq2  TGAGATCTGACTCCCTCTTCTGGCGTGTCTGATGATACCTACAGTGTGTT  650

seq1  TAAATATAATAATAAATCTTTAAAAAAAAATACAAAGATGCCTGCTTATA  700
      ||||||| | ||  ||| ||  |||| || |   |  ||||||||| |||
seq2  TAAATATGA-AAACAATTTTGGAAAAGAAGTGATATTATGCCTGCTCATA  699

seq1  GAATGACCCTGCCTCCTTGACAACTGATCCAGAACAACACTCACAAATGC  750
        ||||||||||||||||||| ||||| ||||||||||||||||||||| 
seq2  TTATGACCCTGCCTCCTTGACCACTGAACCAGAACAACACTCACAAATG-  748

seq1  CCAAATCATCTCTCCTGTCTTAAAAATTATGAATGTATGTATGTTAGACC  800
      |||||||||| |||||||||| |||| || ||||| ||||||||||||||
seq2  CCAAATCATCCCTCCTGTCTTTAAAAATACGAATGAATGTATGTTAGACC  798

seq1  T  801
      |
seq2  T  799