BAC Information

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BAC

Clone NameB6Ng01-083I10
Chromosome10 (Build37)
Map Location 61,145,983 - 61,244,637
singlet/doubletdoublet
Overlap geneSar1a, Tysnd1, Aifm2, H2afy2
Upstream geneCdh23, Slc29a3, Unc5b, Pcbd1, Sgpl1, 1700021K02Rik, Adamts14, Prf1, EG237361, X99384, Nodal, Eif4ebp2, D830039M14Rik, Lrrc20, Npffr1, Ppa1
Downstream geneLOC100039284, Col13a1, EG436164, EG432466, 2010107G23Rik, Neurog3, Tspan15, Tacr2, Hk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083I10.bB6Ng01-083I10.g
ACCDH897766DH897767
length1,171692
definitionDH897766|Mus musculus domesticus DNA, BAC clone: B6Ng01-083I10, 5' end.DH897767|Mus musculus domesticus DNA, BAC clone: B6Ng01-083I10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,145,983 - 61,147,176)(61,243,944 - 61,244,637)
sequence
gaattcaggtgagactgcgtagtagcattcaggatgctgaagcataagga
tagcttaaagccctggagtttgaagccagtctaggcaacacagcaggatc
ctgtctcttaaaagataaaaatacacacatatgtatgaatgtgcatacat
aggtaatttcctccagttattgttcatggaagttttgtgtaattgcagtt
actgcattttctgtcaagttttgtcttgttgagaaagtagtggtttttct
tttctgcgataaacggagctgctgatacagaaattcagtgtgaccaggaa
atgggtctctgtgaatcttaccattcctcggtatttctagatccttcctt
cttaactgtgcttagagctctcagtggctttactcatacattttcccctt
aaagcctataggcactaggaaaagtggttttggtgtctgtgctagttaag
acagactggcagcagtccttggtgcttcatggttgagaccctgtctcaaa
agaaacaaataagatgtttgcttgctttagaacctcttactatattatga
attagtatacttaagaaattaagaattcgtaatatgtaacactagattat
attatagaagtttttattcctgtatgtttctgtaaaacaggatatccttt
cacaagttgaaacatctgtaaatggttaaggatattggtaagtggagtca
accaaactgggccagttgatagatttgctgtgtcctttttggagctgtat
agaacagcttaataacttcttattcaggtcaatgaactcttcattcatag
ctttgttttgattcttttgttctaagaatcccagtggcctaggactcatt
gtgtggaccaaggctgggcacagattttcctgtctctgtctcccaagttc
tgggatttcgtggacatgtcaccacacacagctcccatcatggttcatac
cagtgcatgtttggcttctgattcagctttttacttttcagacagatgtc
tctatgtagcctggctgtctggacactctctgtagatcagctggtctcaa
cgagagattctgtctccagtgctgggattagcattaccacccccacccag
cttgattctgatcataagatactgcatgctagggatgtggcccaactagt
agcagcagaatgggtagcttc
gaattcagtggcagacagttttaaatggaagagatcaacacccacagaga
ggcccgtgcaaaaattgaattctcataagactgttttgttgttgttgttt
ttgtttgtttggttttttttttttttgtaagaaatggccttaaagttagt
tgccggcttgataagtgcctttgaaaagtgtgtgttgtagagatgagcag
aaaagacatatgatctgctaggggtcagccaggcagcgttcactgagcag
gaagtcttttttttttttttttttttttttttggtttggggttttttttt
tttttttttttttttttccaaacagggtttctctgtgtagctctgggtgt
cctggaactcactttgtaaaccaggctggcccccaactcaaaaatccatc
tgcctctgcctcccaagtcctgggattaaaggggggtgccccccctgccc
agcaagcaggaactcttaaacagatccaggcaaaaagagcaacatggatt
tgaggaaatcggggctctactctctgtgagcaccccacttccagcctggg
agatgctaaaataaaaatgttcccacacaggaaaaaaattttatcacttt
cttgtgctcctgggaaattgggtaccttctattgcctaggggtttgtgcc
tgtggacaaagactgggtgcgtgggatttggcactggttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_61145983_61147176
seq2: B6Ng01-083I10.b_46_1216

seq1  GAATTCAGGTGAGACTGCGTAGTAGCATTCAGGATGCTGAAGCATAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTGAGACTGCGTAGTAGCATTCAGGATGCTGAAGCATAAGGA  50

seq1  TAGCTTAAAGCCCTGGAGTTTGAAGCCAGTCTAGGCAACACAGCAGGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTAAAGCCCTGGAGTTTGAAGCCAGTCTAGGCAACACAGCAGGATC  100

seq1  CTGTCTCTTAAAAGATAAAAATACACACATATGTATGAATGTGCATACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTTAAAAGATAAAAATACACACATATGTATGAATGTGCATACAT  150

seq1  AGGTAATTTCCTCCAGTTATTGTTCATGGAAGTTTTGTGTAATTGCAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATTTCCTCCAGTTATTGTTCATGGAAGTTTTGTGTAATTGCAGTT  200

seq1  ACTGCATTTTCTGTCAAGTTTTGTCTTGTTGAGAAAGTAGTGGTTTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATTTTCTGTCAAGTTTTGTCTTGTTGAGAAAGTAGTGGTTTTTCT  250

seq1  TTTCTGCGATAAACGGAGCTGCTGATACAGAAATTCAGTGTGACCAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCGATAAACGGAGCTGCTGATACAGAAATTCAGTGTGACCAGGAA  300

seq1  ATGGGTCTCTGTGAATCTTACCATTCCTCGGTATTTCTAGATCCTTCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTCTCTGTGAATCTTACCATTCCTCGGTATTTCTAGATCCTTCCTT  350

seq1  CTTAACTGTGCTTAGAGCTCTCAGTGGCTTTACTCATACATTTTCCCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTGTGCTTAGAGCTCTCAGTGGCTTTACTCATACATTTTCCCCTT  400

seq1  AAAGCCTATAGGCACTAGGAAAAGTGGTTTTGGTGTCTGTGCTAGTTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTATAGGCACTAGGAAAAGTGGTTTTGGTGTCTGTGCTAGTTAAG  450

seq1  ACAGACTGGCAGCAGTCCTTGGTGCTTCATGGTTGAGACCCTGTCTCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTGGCAGCAGTCCTTGGTGCTTCATGGTTGAGACCCTGTCTCAAA  500

seq1  AGAAACAAATAAGATGTTTGCTTGCTTTAGAACCTCTTACTATATTATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAATAAGATGTTTGCTTGCTTTAGAACCTCTTACTATATTATGA  550

seq1  ATTAGTATACTTAAGAAATTAAGAATTCGTAATATGTAACACTAGATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTATACTTAAGAAATTAAGAATTCGTAATATGTAACACTAGATTAT  600

seq1  ATTATAGAAGTTTTTATTCCTGTATGTTTCTGTAAAACAGGATATCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGAAGTTTTTATTCCTGTATGTTTCTGTAAAACAGGATATCCTTT  650

seq1  CACAAGTTGAAACATCTGTAAATGGTTAAGGATATTGGTAAGTGGAGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTTGAAACATCTGTAAATGGTTAAGGATATTGGTAAGTGGAGTCA  700

seq1  ACCAAACTGGGCCAGTTGATAGATTTGCTGTGTCCTTTTTGGAGCTGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACTGGGCCAGTTGATAGATTTGCTGTGTCCTTTTTGGAGCTGTAT  750

seq1  AGAACAGCTTAATAACTTCTTATTCAGGTCAATGAACTCTTCATTCATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGCTTAATAACTTCTTATTCAGGTCAATGAACTCTTCATTCATAG  800

seq1  CTTTGTTTTGATTCTTTTGTTCTAAGAATCCCAGTGGCCTAGGACTCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTTGATTCTTTTGTTCTAAGAATCCCAGTGGCCTAGGACTCATT  850

seq1  GTGTGGACCAAGGCTGGGCACAGATTTTCCTGTCTCTGTCTCCCAAGTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGACCAAGGCTGGGCACAGATTTTCCTGTCTCTGTCTCCCAAGTTC  900

seq1  TGGGATTTCGTGGACATGTCACCACACACAGCTCCCATCATGGTTCATAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTTCGTGGACATGTCACCACACACAGCTCCCATCATGGTTCATAC  950

seq1  CAGGTGCATGTTTGGCTTCTTGATTCAGCTTTTTACTTTTTCAAGACAGA  1000
      || |||||||||||||||| ||||||||||||||||||||   |||||||
seq2  CA-GTGCATGTTTGGCTTC-TGATTCAGCTTTTTACTTTT--CAGACAGA  996

seq1  TGTTCTCTATGTAGCCCTGGCTGTCCTGGAACACTCTTCTGTAGATCAGG  1050
      || ||||||||||| ||||||||| |||| |||||| ||||||||||| |
seq2  TG-TCTCTATGTAG-CCTGGCTGT-CTGG-ACACTC-TCTGTAGATCA-G  1040

seq1  CTGGTCTCAAACGAAGAGATTCTGTCTCCCAAGTGCTGGGATTAAAGGCA  1100
      |||||||| |||| |||||||||||||||  |||||||||||||   |||
seq2  CTGGTCTC-AACG-AGAGATTCTGTCTCC--AGTGCTGGGATTA---GCA  1083

seq1  TGTACCACCCCCACCCAGCTTGATTCTGATCATTAAAGATACTGCATTGC  1150
      | |||||||||||||||||||||||||||||||  ||||||||||| |||
seq2  T-TACCACCCCCACCCAGCTTGATTCTGATCAT--AAGATACTGCA-TGC  1129

seq1  TAGGGATGTTG-CCAACTAGTAGGCAGCAGTGAATGGGTAGCTTC  1194
      ||||||||| | |||||||||| ||||||  ||||||||||||||
seq2  TAGGGATGTGGCCCAACTAGTA-GCAGCA--GAATGGGTAGCTTC  1171

seq1: chr10_61243944_61244637
seq2: B6Ng01-083I10.g_68_759 (reverse)

seq1  AAAAACCAGTGCCTAACTGCCACGCACACAGTCTTTGTCCACAGGCACAT  50
      ||||||||||||| || | |||||||| ||||||||||||||||||||| 
seq2  AAAAACCAGTGCC-AAATCCCACGCACCCAGTCTTTGTCCACAGGCACAA  49

seq1  ACCCCTAGGCAATAGAAGGTACCCAATTTCCCAGGAGCACAAGTAAGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACCCCTAGGCAATAGAAGGTACCCAATTTCCCAGGAGCACAAGAAAGTGA  99

seq1  TAAAATTTTTTTCCTGTGTTGGCTACATTTTTATTTTAGCATCTCCCAGG  150
      |||||||||||||||||| |||  ||||||||||||||||||||||||||
seq2  TAAAATTTTTTTCCTGTG-TGGGAACATTTTTATTTTAGCATCTCCCAGG  148

seq1  CTGGAAGTGGGGTGCTCACAGAGAGTAGAGCCCCGATTTCCTCAAATCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGTGGGGTGCTCACAGAGAGTAGAGCCCCGATTTCCTCAAATCCA  198

seq1  TGTTGCTCTCTCTGCCTGGATCTGTTTAAGAGTTCCTGCTTGCTGGGCAG  250
      ||||||||| | ||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTCTTTTTGCCTGGATCTGTTTAAGAGTTCCTGCTTGCTGGGCAG  248

seq1  TGGTGGCACACACCTTTAATCCCAGGACTTGGGAGGCAGAGGCAGATGGA  300
       || ||||| | ||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGCACCCCCCTTTAATCCCAGGACTTGGGAGGCAGAGGCAGATGGA  298

seq1  TTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCC  350
      ||| |||||| | |||||||||||| ||||||||||||||||||||| ||
seq2  TTTTTGAGTTGGGGGCCAGCCTGGTTTACAAAGTGAGTTCCAGGACACCC  348

seq1  AGAGCTACACAGAGAAACCCTGTCTCGAAAAAAAAAAAAAAAAAAAAAAA  400
      ||||||||||||||||||||||| | ||||||||||||||||||||||||
seq2  AGAGCTACACAGAGAAACCCTGTTTGGAAAAAAAAAAAAAAAAAAAAAAA  398

seq1  AAACACCAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAGACTTCCTGCTC  450
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAGACTTCCTGCTC  448

seq1  AGTGAACGCTGCCTGGCTGACCCCTAGCAGATCATATGTCTTTTCTGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACGCTGCCTGGCTGACCCCTAGCAGATCATATGTCTTTTCTGCTC  498

seq1  ATCTCTACAACACACACTTTTCAAAGGCACTTATCAAGCCGGCAACTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTACAACACACACTTTTCAAAGGCACTTATCAAGCCGGCAACTAAC  548

seq1  TTTAAGGCCATTTCTTACAAAAAAAAAAAAAACCAAACAAACAAAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGCCATTTCTTACAAAAAAAAAAAAAACCAAACAAACAAAAACAA  598

seq1  CAACAACAAAACAGTCTTATGAGAATTCAATTTTTGCACGGGCCTCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAAAACAGTCTTATGAGAATTCAATTTTTGCACGGGCCTCTCTG  648

seq1  TGGGTGTTGATCTCTTCCATTTAAAACTGTCTGCCACTGAATTC  694
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTTGATCTCTTCCATTTAAAACTGTCTGCCACTGAATTC  692