BAC Information

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BAC

Clone NameB6Ng01-083L18
Chromosome10 (Build37)
Map Location 28,882,665 - 29,024,563
singlet/doubletdoublet
Overlap gene6330407J23Rik
Upstream genePtprk, E430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447
Downstream geneEchdc1, Rnf146, Rspo3, EG630389, Rpl12, LOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083L18.bB6Ng01-083L18.g
ACCDH897911DH897912
length9651,156
definitionDH897911|Mus musculus domesticus DNA, BAC clone: B6Ng01-083L18, 5' end.DH897912|Mus musculus domesticus DNA, BAC clone: B6Ng01-083L18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,023,598 - 29,024,563)(28,882,665 - 28,883,832)
sequence
gaattcttaaagaagaatatgctcaaggtgctgttgcacactaccttaat
ctggtctatataatggcttccaggtcagccagggctatgtacagagatcc
agtctcaacaaaaagaggaagagaagaaagaaaagaagaaggtagaagta
gttgttaccttgcatttcagaggtctctgttagaatatgcggcacaatcc
tggaaaaatcacaccagctgcaggtctcacatgggaggatttattgacag
aggtggtctctgaggggatgtgagaagaagaaggagaaagagagggagaa
ggaggaggggctgtgagatgagtattttatccaggccaagaagcatctac
aaagggatgtattgggagtgtcatggcagtggacgcaggagtggcttttc
atcgcttctggctgtccatagatgtacctctgattttctaagagaggggc
caggaatagggtcatcagaggatctcttagattgcttcttgctgtcatca
gttttgacccttaccattggggctcattggatagtcattctcatcaggtt
cctctgtgggcactgcttggcaatcccgtaaagggaactaagtacttgtt
tggttagaatttttttttttttaatgtggaggaatgtggatgaggagcaa
caaggttaatgaggcagtgagcaaatagtaaagccagaaaaaatgagaag
tgtgtttaggaaaggcagtatgctctttccatttatagggttttcaaaaa
cccaggaattagaggcattatactctttcctatgttctttgatgtctgct
ttgtagctgatagattttattttctcactattccggactcattgacgtag
aaacagcattctctgggagaaaaggcaaagacctttttctttcctgtaag
accattgttctgaagcacacactgctgctagggatcaatctgtcctttgt
agagacatgtcctga
gaattcttcttgtagctacattactaattttaaacaaaataccattgtgg
tttaaatttatatttcctaattatgttgagtatcattttaaacgtatatt
gttcatttacttgttttctgcagtatctatctatctatctatctatctat
ctatctatctatctatctctatctatcatctatctatcatctatctgttt
atgtctatttttagttgcattttctacatatttttgaagtctaatttggg
tgtcttttaccttttacataccagattttcatcgtataaatgatttgagt
ttttcttctattttaaatgtttttatatttattttttactatgttcgtgt
ctgtcagggttggcgatgggtatatgtacctgtctgccatcacaggagcc
aaaagaggtcacaggtatcagatcctcctggagctcacaggacatgggtg
ctgggaactgaacgtgggtcctctgcaaaagcagtatgcaatcttaacca
ctgagccatatctcttcagcagcctacatgttattttttatatattttta
ttttttagttgctatacaaactttgtacttaccaggcattttattgtact
ttgaaacacaatttaacctataattatcaagtcaatgtaattagcattta
tagctaatttatacctcctcagaaatgatctgttctgtgtattgggaaac
ttaaaatttttcttgtttctttgaagtatataatagagggttatactctt
taggtacactaccataccataacctattagaactgatttatctgcctatt
ctagtccaaccatttttcctctctgtccttagtggtcatagttctactct
atatttctatataatcagaagttttagcttccaaaataagccagagagtg
tggtgcttaactttttgtgcccaatttactttacataacgctttccaggt
ttgtttccatagctaaaaagatttatcctttgtgggtagatattattcca
ctatgtggtgtatggtagtggaatatgaattgtttactaacctaatgtta
gaaatgcttatgggattaggagagtgaggctctttcgttgagagatcatc
tggcttcttatctaatgaaagttgatcatagtgatccagattgaatacta
ttggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_29023598_29024563
seq2: B6Ng01-083L18.b_48_1012 (reverse)

seq1  TCAGGACATGTTCTCCTTCCAAAGACAGATTGATCCCCTGGCAGCAGTG-  49
      |||||||||| ||| || | || ||||||||||| |||| ||||||||| 
seq2  TCAGGACATG-TCT-CTACAAAGGACAGATTGAT-CCCTAGCAGCAGTGT  47

seq1  GTGCTTCAGAACCAATGGTCTTACAGGGAAAGAAAATGGTCTTTGCCTTT  99
      ||||||||||| ||||||||||||| |||||||||| |||||||||||||
seq2  GTGCTTCAGAA-CAATGGTCTTACA-GGAAAGAAAAAGGTCTTTGCCTTT  95

seq1  TCCTCCCAGAAGAATGCTGCTTCTACGTCAATGAGTCCGGAATAGTGAG-  148
      | ||||||| ||||||||| ||||||||||||||||||||||||||||| 
seq2  T-CTCCCAG-AGAATGCTGTTTCTACGTCAATGAGTCCGGAATAGTGAGA  143

seq1  AAATAAAATCTATCAGCTAC-AAGCAGACATCAAAGAACATAGGAAAGAG  197
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAATAAAATCTATCAGCTACAAAGCAGACATCAAAGAACATAGGAAAGAG  193

seq1  TATAATGCCTCTAATTCCTGGGTTTTTGAAAACCCTAT-AATGG-AAGAG  245
      |||||||||||||||||||||||||||||||||||||| ||||| |||||
seq2  TATAATGCCTCTAATTCCTGGGTTTTTGAAAACCCTATAAATGGAAAGAG  243

seq1  CATACTGCCTTTCCTAAACCCACTTCTCA-TTTTTCTGGCTTTACTATTT  294
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  CATACTGCCTTTCCTAAACACACTTCTCATTTTTTCTGGCTTTACTATTT  293

seq1  GCTCACTGCCTCATTAACCTTGTTGCTCCTCATCCACATTCCTCCACATT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTGCCTCATTAACCTTGTTGCTCCTCATCCACATTCCTCCACATT  343

seq1  AAAAAAAAAAAAATTCTAACCAAACAAGTACTTAGTTCCCTTTACGGGAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAATTCTAACCAAACAAGTACTTAGTTCCCTTTACGGGAT  393

seq1  TGCCAAGCAGTGCCCACAGAGGAACCTGATGAGAATGACTATCCAATGAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGCAGTGCCCACAGAGGAACCTGATGAGAATGACTATCCAATGAG  443

seq1  CCCCAATGGTAAGGGTCAAAACTGATGACAGCAAGAAGCAATCTAAGAGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATGGTAAGGGTCAAAACTGATGACAGCAAGAAGCAATCTAAGAGA  493

seq1  TCCTCTGATGACCCTATTCCTGGCCCCTCTCTTAGAAAATCAGAGGTACA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGATGACCCTATTCCTGGCCCCTCTCTTAGAAAATCAGAGGTACA  543

seq1  TCTATGGACAGCCAGAAGCGATGAAAAGCCACTCCTGCGTCCACTGCCAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGGACAGCCAGAAGCGATGAAAAGCCACTCCTGCGTCCACTGCCAT  593

seq1  GACACTCCCAATACATCCCTTTGTAGATGCTTCTTGGCCTGGATAAAATA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTCCCAATACATCCCTTTGTAGATGCTTCTTGGCCTGGATAAAATA  643

seq1  CTCATCTCACAGCCCCTCCTCCTTCTCCCTCTCTTTCTCCTTCTTCTTCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTCACAGCCCCTCCTCCTTCTCCCTCTCTTTCTCCTTCTTCTTCT  693

seq1  CACATCCCCTCAGAGACCACCTCTGTCAATAAATCCTCCCATGTGAGACC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCCCTCAGAGACCACCTCTGTCAATAAATCCTCCCATGTGAGACC  743

seq1  TGCAGCTGGTGTGATTTTTCCAGGATTGTGCCGCATATTCTAACAGAGAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTGGTGTGATTTTTCCAGGATTGTGCCGCATATTCTAACAGAGAC  793

seq1  CTCTGAAATGCAAGGTAACAACTACTTCTACCTTCTTCTTTTCTTTCTTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAATGCAAGGTAACAACTACTTCTACCTTCTTCTTTTCTTTCTTC  843

seq1  TCTTCCTCTTTTTGTTGAGACTGGATCTCTGTACATAGCCCTGGCTGACC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCTTTTTGTTGAGACTGGATCTCTGTACATAGCCCTGGCTGACC  893

seq1  TGGAAGCCATTATATAGACCAGATTAAGGTAGTGTGCAACAGCACCTTGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCCATTATATAGACCAGATTAAGGTAGTGTGCAACAGCACCTTGA  943

seq1  GCATATTCTTCTTTAAGAATTC  966
      ||||||||||||||||||||||
seq2  GCATATTCTTCTTTAAGAATTC  965

seq1: chr10_28882665_28883832
seq2: B6Ng01-083L18.g_68_1223

seq1  GAATTCTTCTTGTAGCTACATTACTAATTTTAAACAAAATACCATTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTGTAGCTACATTACTAATTTTAAACAAAATACCATTGTGG  50

seq1  TTTAAATTTATATTTCCTAATTATGTTGAGTATCATTTTAAACGTATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTTATATTTCCTAATTATGTTGAGTATCATTTTAAACGTATATT  100

seq1  GTTCATTTACTTGTTTTCTGCAG----TATCTATCTATCTATCTATCTAT  146
      |||||||||||||||||||||||    |||||||||||||||||||||||
seq2  GTTCATTTACTTGTTTTCTGCAGTATCTATCTATCTATCTATCTATCTAT  150

seq1  CTATCTATCTATCTATCTCTATCTATCATCTATCTATCATCTATCTGTTT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCTATCTATCTCTATCTATCATCTATCTATCATCTATCTGTTT  200

seq1  ATGTCTATTTTTAGTTGCATTTTCTACATATTTTTGAAGTCTAATTTGGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTATTTTTAGTTGCATTTTCTACATATTTTTGAAGTCTAATTTGGG  250

seq1  TGTCTTTTACCTTTTACATACCAGATTTTCATCGTATAAATGATTTGAGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTACCTTTTACATACCAGATTTTCATCGTATAAATGATTTGAGT  300

seq1  TTTTCTTCTATTTTAAATGTTTTTATATTTATTTTTTACTATGTTCGTGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCTATTTTAAATGTTTTTATATTTATTTTTTACTATGTTCGTGT  350

seq1  CTGTCAGGGTTGGCGATGGGTATATGTACCTGTCTGCCATCACAGGAGCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGGGTTGGCGATGGGTATATGTACCTGTCTGCCATCACAGGAGCC  400

seq1  AAAAGAGGTCACAGGTATCAGATCCTCCTGGAGCTCACAGGACATGGGTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGGTCACAGGTATCAGATCCTCCTGGAGCTCACAGGACATGGGTG  450

seq1  CTGGGAACTGAACGTGGGTCCTCTGCAAAAGCAGTATGCAATCTTAACCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAACTGAACGTGGGTCCTCTGCAAAAGCAGTATGCAATCTTAACCA  500

seq1  CTGAGCCATATCTCTTCAGCAGCCTACATGTTATTTTTTATATATTTTTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCATATCTCTTCAGCAGCCTACATGTTATTTTTTATATATTTTTA  550

seq1  TTTTTTAGTTGCTATACAAACTTTGTACTTACCAGGCATTTTATTGTACT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAGTTGCTATACAAACTTTGTACTTACCAGGCATTTTATTGTACT  600

seq1  TTGAAACACAATTTAACCTATAATTATCAAGTCAATGTAATTAGCATTTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACACAATTTAACCTATAATTATCAAGTCAATGTAATTAGCATTTA  650

seq1  TAGCTAATTTATACCTCCTCAGAAATGATCTGTTCTGTGTATTGGGAAAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAATTTATACCTCCTCAGAAATGATCTGTTCTGTGTATTGGGAAAC  700

seq1  TTAAAATTTTTCTTGTTTCTTTGAAGTATATAATAGAGGGTTATACTCTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTTTTCTTGTTTCTTTGAAGTATATAATAGAGGGTTATACTCTT  750

seq1  TAGGTACACTACCATACCATAACCTATTAGAACTGATTTATCTGCCTATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTACACTACCATACCATAACCTATTAGAACTGATTTATCTGCCTATT  800

seq1  CTAGTCCAACCATTTTTCCTCTCTGTCCTTAGTGGTCATAGTTCTACTCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCCAACCATTTTTCCTCTCTGTCCTTAGTGGTCATAGTTCTACTCT  850

seq1  ATATTTCTATATAATCAGAAGTTTTAGCTTCCAAAATAAGCCAGAGAGTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTATATAATCAGAAGTTTTAGCTTCCAAAATAAGCCAGAGAGTG  900

seq1  TGGTGCTTAACTTTTTGTGCCCAATTTTACTTTACATAACGCTTTCCAGG  946
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGGTGCTTAACTTTTTGTGCCCAA-TTTACTTTACATAACGCTTTCCAGG  949

seq1  TTTGTTTCCATAGCTAAAAAGATTTTATCCTTTTGTGGGTAGATATTATT  996
      |||||||||||||||||||||| ||||||| |||||||||||||||||||
seq2  TTTGTTTCCATAGCTAAAAAGA-TTTATCC-TTTGTGGGTAGATATTATT  997

seq1  CCACTATGT-GTGTATGGTAGTGG-ATATGAATGTTTAACTAAACTAAAT  1044
      ||||||||| |||||||||||||| ||||||||  || ||||| ||||  
seq2  CCACTATGTGGTGTATGGTAGTGGAATATGAATTGTTTACTAACCTAATG  1047

seq1  GTAGAAATGCTTATGGGATTAGGAGAGTGAGGGCTCTTTCGTTGAGAGAG  1094
       ||||||||||||||||||||||||||||| |||||||||||||||||| 
seq2  TTAGAAATGCTTATGGGATTAGGAGAGTGA-GGCTCTTTCGTTGAGAGA-  1095

seq1  TACATCTTGGGCTTTCTTATCTAATGAAAGGTTTGATCCATTAGTGGATT  1144
        |||||  ||| |||||||||||||||||  ||||||   |||| ||| 
seq2  -TCATCT--GGC-TTCTTATCTAATGAAAG--TTGATC--ATAGT-GATC  1136

seq1  CAAAGTTTGAATACACTATTGGCA  1168
      |  || ||||||  ||||||||||
seq2  C--AGATTGAAT--ACTATTGGCA  1156