BAC Information

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BAC

Clone NameB6Ng01-083M22
Chromosome10 (Build37)
Map Location 40,142,868 - 40,219,481
singlet/doubletdoublet
Overlap geneCdc2l6
Upstream geneFyn, LOC629337, Traf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342, Slc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, LOC666374
Downstream geneSlc22a16, Ddo, 9030224M15Rik, Cdc40, Wasf1, Gpr6, A530089I17Rik, LOC633979, Zbtb24, Mical1, Smpd2, Ppil6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083M22.bB6Ng01-083M22.g
ACCDH897965DH897966
length1,1451,137
definitionDH897965|Mus musculus domesticus DNA, BAC clone: B6Ng01-083M22, 5' end.DH897966|Mus musculus domesticus DNA, BAC clone: B6Ng01-083M22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,142,868 - 40,144,025)(40,218,340 - 40,219,481)
sequence
gaattcctcttagcgtctaggatgctctgttcttgttctgctagggaggg
cactttgcttcctagcagtaccttctcctgtgtgaaggaggcacctactt
ttttctctagaattttagacagtgacatcgtctttctagatatcgtcttt
ctcttgtgtctcttttaaaaacactttatcatttattttcctaaagagtt
ctctgtttaattctcttcctgtcactgggcacctcttctctgcagagtga
atcccaggctcctcacctcctgtcaagccctggctctaagctccagattc
tgatggcttcagtctgtaacacccgatactaaagtcagccaccccattcg
gacgtgtaatgttttctcttatctctaaaccatacctgccaggcctgttt
atttcctggccatccggatcatttgtctttgaatcagtgactagatccca
ttactatgttgctgccctctcattttctatcccttccttcctattactgt
catgaacccacctatacggacttgtgcagtttatgaaattgaatatctat
tatatacatatataatatattcatatatacatgtgtatatatgtatacac
aatgggatatgtacacacacacacatatatatgtatatatatgaataata
aacataagagattgtttcctaaattacaaatgtatggggtagaaggggat
tgaggaagtaaaaatcaagaaagaggtggctgactgaagtagagaaaggt
agtgtaaagtaagggctaaagagctatgtgaagtcaaatatgatgacatt
agccaaagacaagtgagctcctgtgactctgactgcgccacagtcaccat
cggtttgccatggtgatgaaaagaaagcctgagctcagtgtcccctgttc
tgctttaacttatttatccttacatttttactttatttgctgaattatgt
tccagtatagctagtcattctgtggttgctgctttgatcaaggtgattgt
caaggatggtgttgcacgttcgtaccttgacacaaaacacttcctagagt
acattccacaggacatggtggtacagctctgctctcagctgtgcaggggc
tgagcagatgaccattgaactagtagttcccggagtagcctagga
gaattcacttaggcaaagtctgaaagaggaaggttgtgaaactgggtcag
gaggaggcgtctgatgataaaacacactttctgttcagcgatgagggacg
gattccaaacatatatagcagaccgtacactgaccctgtggcaggtgaag
gagccttcagactctgtgagctttttgaccctgggaaaaaagcttcactg
gggtgagacatgcgggagcaggcacagctggctgacaggtcttctgcccg
ttgataggtccctgcctcgtcacgtggacaggaaaatgatagcgacttct
ttaggctggagagatggcttgaaagggtggagcatattccattctagcag
aagacttaagttcagttcccagggcccacttcaggctgctcacgcccctg
ttaacccagccccaggaggcctgatgccctcttctggtccttgcaggcac
ttgtgcctgcatacacacacacacacacacacacacacacacaacttaat
ttatttatttatttatttatttatttatttatttatttattttagtacat
ataaaagaaagagcccaccggtggctatggagatgctcagcagtgaagtc
cactgactgctctttcagacagcctaggttcagttcccagcgcccacatg
gtaccccacaaccatctgtaattccagttccatggaatctgatagcctct
tctgacctctgcaggtaccaagcacacacatggtgcacacacatacatgg
gggcaaaacatccgtatgcaacaattttttagaaagaaagctcaaaacta
atgtttcttcgaagccatgactaattcctgtgttcaaatgagttggggga
gggggcaactgaaatggtgtctttgtttaaaaaggggttctactgtatag
ctcaggctagcctcagactaatagtgtttctcactcacagcttcctgtgt
gcaccacaacgagaggaaaattaaaatttcaggagtttattgagcatctt
attgtgagactggtatgcttttgttatcatgttatacagactagtcacag
agatataaaaaactatacagttttgataacgaaaagaagtggacatgttt
tttactcatgggtgtctaacagaccttctcgtgcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_40142868_40144025
seq2: B6Ng01-083M22.b_49_1193

seq1  GAATTCCTCTTAGCGTCTAGGATGCTCTGTTCTTGTTCTGCTAGGGAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTAGCGTCTAGGATGCTCTGTTCTTGTTCTGCTAGGGAGGG  50

seq1  CACTTTGCTTCCTAGCAGTACCTTCTCCTGTGTGAAGGAGGCACCTACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGCTTCCTAGCAGTACCTTCTCCTGTGTGAAGGAGGCACCTACTT  100

seq1  TTTTCTCTAGAATTTTAGACAGTGACATCGTCTTTCTAGATATCGTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTAGAATTTTAGACAGTGACATCGTCTTTCTAGATATCGTCTTT  150

seq1  CTCTTGTGTCTCTTTTAAAAACACTTTATCATTTATTTTCCTAAAGAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTGTCTCTTTTAAAAACACTTTATCATTTATTTTCCTAAAGAGTT  200

seq1  CTCTGTTTAATTCTCTTCCTGTCACTGGGCACCTCTTCTCTGCAGAGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTTAATTCTCTTCCTGTCACTGGGCACCTCTTCTCTGCAGAGTGA  250

seq1  ATCCCAGGCTCCTCACCTCCTGTCAAGCCCTGGCTCTAAGCTCCAGATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGGCTCCTCACCTCCTGTCAAGCCCTGGCTCTAAGCTCCAGATTC  300

seq1  TGATGGCTTCAGTCTGTAACACCCGATACTAAAGTCAGCCACCCCATTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCTTCAGTCTGTAACACCCGATACTAAAGTCAGCCACCCCATTCG  350

seq1  GACGTGTAATGTTTTCTCTTATCTCTAAACCATACCTGCCAGGCCTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGTAATGTTTTCTCTTATCTCTAAACCATACCTGCCAGGCCTGTTT  400

seq1  ATTTCCTGGCCATCCGGATCATTTGTCTTTGAATCAGTGACTAGATCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTGGCCATCCGGATCATTTGTCTTTGAATCAGTGACTAGATCCCA  450

seq1  TTACTATGTTGCTGCCCTCTCATTTTCTATCCCTTCCTTCCTATTACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATGTTGCTGCCCTCTCATTTTCTATCCCTTCCTTCCTATTACTGT  500

seq1  CATGAACCCACCTATACGGACTTGTGCAGTTTATGAAATTGAATATCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACCCACCTATACGGACTTGTGCAGTTTATGAAATTGAATATCTAT  550

seq1  TATATACATATATAATATATTCATATATACATGTGTATATATGTATACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACATATATAATATATTCATATATACATGTGTATATATGTATACAC  600

seq1  AATGGGATATGTACACACACACACATATATATGTATATATATGAATAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGATATGTACACACACACACATATATATGTATATATATGAATAATA  650

seq1  AACATAAGAGATTGTTTCCTAAATTACAAATGTATGGGGTAGAAGGGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAGAGATTGTTTCCTAAATTACAAATGTATGGGGTAGAAGGGGAT  700

seq1  TGAGGAAGTAAAAATCAAGAAAGAGGTGGCTGACTGAAGTAGAGAAAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAGTAAAAATCAAGAAAGAGGTGGCTGACTGAAGTAGAGAAAGGT  750

seq1  AGTGTAAAGTAAGGGCTAAAGAGCTATGTGAAGTCAAATATGATGACATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAAAGTAAGGGCTAAAGAGCTATGTGAAGTCAAATATGATGACATT  800

seq1  AGCCAAAGACAAGTGAGCTCCTGTGACTCTGACTGCGCCACAGTCACCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAGACAAGTGAGCTCCTGTGACTCTGACTGCGCCACAGTCACCAT  850

seq1  CGGTTTGCCATGGTGATGAAAAGAAAGCCTGAGCTCAGTGTCCCCTGTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTGCCATGGTGATGAAAAGAAAGCCTGAGCTCAGTGTCCCCTGTTC  900

seq1  TGCTTTAAACTTATTTATCCTTACATTTTTACTTTATTTGCTGAATTATG  950
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTT-AACTTATTTATCCTTACATTTTTACTTTATTTGCTGAATTATG  949

seq1  TTTCCAGTATTAGCTAGTCATTCTGTGGTTGCTTGCTTTGATCAAAGGTG  1000
       |||||||| |||||||||||||||||||||| |||||||||| ||||||
seq2  -TTCCAGTA-TAGCTAGTCATTCTGTGGTTGC-TGCTTTGATC-AAGGTG  995

seq1  ATTGTCAAAGGATGGTGTTGGCACGTCCGTACCCTTGGACACAAAAACAC  1050
      |||||| |||||||||||| |||||| ||||||  | ||||| |||||||
seq2  ATTGTC-AAGGATGGTGTT-GCACGTTCGTACC--TTGACAC-AAAACAC  1040

seq1  TCCTTAGAGTACATTCCACAGGACATGGTGGTACAGCTCTGCTCTCAGCT  1100
      | | ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGAGTACATTCCACAGGACATGGTGGTACAGCTCTGCTCTCAGCT  1090

seq1  GTGCAGGGGGCTGAGGCAAGATGACCATTTGAACCTAGTAGTT-CCAGAG  1149
      ||||| |||||||||   ||||||||| ||||| ||||||||| || |||
seq2  GTGCA-GGGGCTGAG--CAGATGACCA-TTGAA-CTAGTAGTTCCCGGAG  1135

seq1  TAG-CTAGGA  1158
      ||| ||||||
seq2  TAGCCTAGGA  1145

seq1: chr10_40218340_40219481
seq2: B6Ng01-083M22.g_70_1206 (reverse)

seq1  TGTGC---AGAAGGTCTGGTAGACACTCATGAGTTAAAAAACAATGTCAA  47
      |||||   |||||||||| ||||||| |||||| |||||||| ||||| |
seq2  TGTGCACGAGAAGGTCTGTTAGACACCCATGAG-TAAAAAAC-ATGTCCA  48

seq1  CTTCTTTCTGTTATCAAAATTTGTTATAGTTTTTTATATCTCCTTGGTGA  97
      |||||||  |||||||||| |   ||||||||||||||||||    ||||
seq2  CTTCTTTTCGTTATCAAAACT--GTATAGTTTTTTATATCTC---TGTGA  93

seq1  CTAGTCTGTAATAACATGATAAC-AGAGCATACCAGTCTCCACAATTAGA  146
      ||||||||| ||||||||||||| | ||||||||||||| |||||| |||
seq2  CTAGTCTGT-ATAACATGATAACAAAAGCATACCAGTCT-CACAATAAGA  141

seq1  TGCTCAATAAACTCCTGAAATTTTAATTTTCCTCTCGTTGTGGTGGCACA  196
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGCTCAATAAACTCCTGAAATTTTAATTTTCCTCTCGTTGTGGT-GCACA  190

seq1  CAGGAAGCTGTTGAGTGAGAAACACTATTAGTCTGAGGCTAGCCTGAGCT  246
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGCTG-TGAGTGAGAAACACTATTAGTCTGAGGCTAGCCTGAGCT  239

seq1  ATACAGTAGAACCCCTTTTTAAACAAAGACACCATTTCAGTTGCCCCCTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTAGAACCCCTTTTTAAACAAAGACACCATTTCAGTTGCCCCCTC  289

seq1  CCCCAACTCATTTGAACACAGGAATTAGTCATGGCTTCGAAG-AACATTA  345
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCCCAACTCATTTGAACACAGGAATTAGTCATGGCTTCGAAGAAACATTA  339

seq1  GTTTTGAGCTTTCTTTCTAAAAAATTGTTGCATACGGATGTTTTG-CCCC  394
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTTTTGAGCTTTCTTTCTAAAAAATTGTTGCATACGGATGTTTTGCCCCC  389

seq1  ATGTATGTGTGTGCACCATGTGTGTGCTTGGTACCTGCAGAGGTCAGAAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTGTGTGCACCATGTGTGTGCTTGGTACCTGCAGAGGTCAGAAG  439

seq1  AGGCTATCAGATTCCATGGAACTGGAATTACAGATGGTTGTGGGGTACCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATCAGATTCCATGGAACTGGAATTACAGATGGTTGTGGGGTACCA  489

seq1  TGTGGGCGCTGGGAACTGAACCTAGGCTGTCTGAAAGAGCAGTCAGTGGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCGCTGGGAACTGAACCTAGGCTGTCTGAAAGAGCAGTCAGTGGA  539

seq1  CTTCACTGCTGAGCATCTCCATAGCCACCGGTGGGCTCTTTCTTTTATAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTGCTGAGCATCTCCATAGCCACCGGTGGGCTCTTTCTTTTATAT  589

seq1  GTACTAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT  639

seq1  TAAGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGCAGGCACAAGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGCAGGCACAAGT  689

seq1  GCCTGCAAGGACCAGAAGAGGGCATCAGGCCTCCTGGGGCTGGGTTAACA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCAAGGACCAGAAGAGGGCATCAGGCCTCCTGGGGCTGGGTTAACA  739

seq1  GGGGCGTGAGCAGCCTGAAGTGGGCCCTGGGAACTGAACTTAAGTCTTCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGTGAGCAGCCTGAAGTGGGCCCTGGGAACTGAACTTAAGTCTTCT  789

seq1  GCTAGAATGGAATATGCTCCACCCTTTCAAGCCATCTCTCCAGCCTAAAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAATGGAATATGCTCCACCCTTTCAAGCCATCTCTCCAGCCTAAAG  839

seq1  AAGTCGCTATCATTTTCCTGTCCACGTGACGAGGCAGGGACCTATCAACG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCGCTATCATTTTCCTGTCCACGTGACGAGGCAGGGACCTATCAACG  889

seq1  GGCAGAAGACCTGTCAGCCAGCTGTGCCTGCTCCCGCATGTCTCACCCCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAGACCTGTCAGCCAGCTGTGCCTGCTCCCGCATGTCTCACCCCA  939

seq1  GTGAAGCTTTTTTCCCAGGGTCAAAAAGCTCACAGAGTCTGAAGGCTCCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGCTTTTTTCCCAGGGTCAAAAAGCTCACAGAGTCTGAAGGCTCCT  989

seq1  TCACCTGCCACAGGGTCAGTGTACGGTCTGCTATATATGTTTGGAATCCG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGCCACAGGGTCAGTGTACGGTCTGCTATATATGTTTGGAATCCG  1039

seq1  TCCCTCATCGCTGAACAGAAAGTGTGTTTTATCATCAGACGCCTCCTCCT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCATCGCTGAACAGAAAGTGTGTTTTATCATCAGACGCCTCCTCCT  1089

seq1  GACCCAGTTTCACAACCTTCCTCTTTCAGACTTTGCCTAAGTGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGTTTCACAACCTTCCTCTTTCAGACTTTGCCTAAGTGAATTC  1137