BAC Information

Click to search

BAC

Clone NameB6Ng01-083N12
Chromosome12 (Build37)10 (Build37)
Map Location 98,568,238 - 98,569,434104,053,596 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG628277
Downstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746, Galc, Gpr65
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083N12.bB6Ng01-083N12.g
ACCDH897991DH897992
length1,158978
definitionDH897991|Mus musculus domesticus DNA, BAC clone: B6Ng01-083N12, 5' end.DH897992|Mus musculus domesticus DNA, BAC clone: B6Ng01-083N12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(98,568,238 - 98,569,434)(104,053,596 - 104,054,363)
sequence
gaattctctcaaatctctacccctaagtgaagaactgctggcaaataaga
tattgaagaaggacaatcaggtgtttttagggatgagccccctgataggt
tatctagtcctaagagattggctctaaataaatagagccacactaagtta
actgggcatttggcattcataaatgggtatatataagtatatgtaaccca
caaataatgagagcatatgaactggagaaaggactggaggcacagaaaaa
gttgaaagaaaagaaaggggagtggtataactaactatggttatatatta
atggatgaaacttgaaagcaataaaaagtaactatttcttcatctacaaa
gtagttattctttccataggataaaaattagaataatataaattgttctc
tatcagtggttcccaattcctaacactatggctctttattatactttctc
atactgtggtgacctccaaccataaaagtattttcattgctacttcataa
ctgtaattttgctatccttatgaatcataatgtaaatatttgtgttttct
gataatctcaggggactgctgtgaaagggttgtttgacctccaaaggagt
cctgacccagagattgagaaacactgtcctacatgaaactgaaattcaat
acttaaaagcaatgctaccaacttcagcaaactgcttggaaaaaccaaac
caaacaaacaaaaaacccaaatccaactaaagagctgtttttttttttaa
tgcaatttcataaaactaagtcttctaaatcttcctcagttacgttttca
atattcaaaatgtaactatgtttctaacattcctctgtcttcatttctgt
ctgtacataactctgttttgttattgacaagtcatggacagtttcctttc
tgttttggatcattcactaaaatcttcaccatgtccctattaattacctt
ctataaacagtggcattttatagcagatcattgccttcagtattttccag
tgttagacatctttttatctaactaaagtaaactagaaatgtgtgtggtt
atgtaatagtaattgcttttatgatagaactcagaaactgggtcagttgc
atgacctcagacttcttctttgaataaagttcagtactggatctttagta
cttgctac
gaattctcacctgaggaacaccgaatggctgagaaacacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagccagaaatggctaagatcaaaaattcaggtgacag
cagatgctggcgaggatgtggagaaaaaggaacactcctccattgctggt
gggattgcaagcttgtacaaccactctggaaatcagtctggtggttcctc
agaatattggacatagtacttactggaggatcctgctatacctctcctgg
gcatatatccagaagatgtcccaacttgtaaggacacatgctccactatg
ttcatagcagccttatttatagccaaaagctggaaagaattcagatgcct
ctcaacagaggaatggatacagaaaatgtggtacatttacacaatggagt
actactcagctattaaaaagaatgaatttatgaaattcctaggcaaatgg
atggacctggagggcatcatcctgagtgaggtaacccaatcacaaaagaa
ctcacatgatatgtactcactgataagtggatattagcccagaaacttag
aatacccaagatacaagatacaatttgcaaaacacatgaaactcaagaag
aacaaagacgaaaagtgtggacactttgctccttcttagaattgggaaca
aaacacccatggaaggagttacagagactaagattggagctgcgacaaaa
ggatgggccatctagagactgccatacctggggatccatcccacagactt
ttggtgtagcattggaaatgtaaaggaagaaaatacctaattaaaaaaaa
taatacatttcacctgcaataaatagattcctcttcatctaaactctgtc
tgcttcatgatttctaaggagtcctgcatttccattttggagagaatctc
atcagtgtgggcagttctcccatcattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_98568238_98569434
seq2: B6Ng01-083N12.b_50_1207

seq1  GAATTCTCTCAAATCTCTACCCCTAAGTGAAGAACTGCTGGCAAATAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAAATCTCTACCCCTAAGTGAAGAACTGCTGGCAAATAAGA  50

seq1  TATTGAAGAAGGACAATCAGGTGTTTTTAGGGATGAGCCCCCTGATAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAGAAGGACAATCAGGTGTTTTTAGGGATGAGCCCCCTGATAGGT  100

seq1  TATCTAGTCCTAAGAGATTGGCTCTAAATAAATAGAGCCACACTAAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAGTCCTAAGAGATTGGCTCTAAATAAATAGAGCCACACTAAGTTA  150

seq1  ACTGGGCATTTGGCATTCATAAATGGGTATATATAAGTATATGTAACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCATTTGGCATTCATAAATGGGTATATATAAGTATATGTAACCCA  200

seq1  CAAATAATGAGAGCATATGAACTGGAGAAAGGACTGGAGGCACAGAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAATGAGAGCATATGAACTGGAGAAAGGACTGGAGGCACAGAAAAA  250

seq1  GTTGAAAGAAAAGAAAGGGGAGTGGTATAACTAACTATGGTTATATATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAAGAAAAGAAAGGGGAGTGGTATAACTAACTATGGTTATATATTA  300

seq1  ATGGATGAAACTTGAAAGCAATAAAAAGTAACTATTTCTTCATCTACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGAAACTTGAAAGCAATAAAAAGTAACTATTTCTTCATCTACAAA  350

seq1  GTAGTTATTCTTTCCATAGGATAAAAATTAGAATAATATAAATTGTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTATTCTTTCCATAGGATAAAAATTAGAATAATATAAATTGTTCTC  400

seq1  TATCAGTGGTTCCCAATTCCTAACACTATGGCTCTTTATTATACTTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTGGTTCCCAATTCCTAACACTATGGCTCTTTATTATACTTTCTC  450

seq1  ATACTGTGGTGACCTCCAACCATAAAAGTATTTTCATTGCTACTTCATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTGGTGACCTCCAACCATAAAAGTATTTTCATTGCTACTTCATAA  500

seq1  CTGTAATTTTGCTATCCTTATGAATCATAATGTAAATATTTGTGTTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATTTTGCTATCCTTATGAATCATAATGTAAATATTTGTGTTTTCT  550

seq1  GATAATCTCAGGGGACTGCTGTGAAAGGGTTGTTTGACCTCCAAAGGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATCTCAGGGGACTGCTGTGAAAGGGTTGTTTGACCTCCAAAGGAGT  600

seq1  CCTGACCCAGAGATTGAGAAACACTGTCCTACATGAAACTGAAATTCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCCAGAGATTGAGAAACACTGTCCTACATGAAACTGAAATTCAAT  650

seq1  ACTTAAAAGCAATGCTACCAACTTCAGCAAACTGCTTGGAAAAACCAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAAGCAATGCTACCAACTTCAGCAAACTGCTTGGAAAAACCAAAC  700

seq1  CAAACAAACAAAAAACCCAAATCCAACTAAAGAGCTGTTTTTTTTTTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAAAAACCCAAATCCAACTAAAGAGCTGTTTTTTTTTTTAA  750

seq1  TGCAATTTCATAAAACTAAGTCTTCTAAATCTTCCTCAGTTACGTTTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTTCATAAAACTAAGTCTTCTAAATCTTCCTCAGTTACGTTTTCA  800

seq1  ATATTCAAAATGTAACTATGTTTCTAACATTCCTCTGTCTTCATTTCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAAAATGTAACTATGTTTCTAACATTCCTCTGTCTTCATTTCTGT  850

seq1  CTGTACATAACTCTGTTTTGTTATTGACAAGTCATGGACAGTTTCCTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACATAACTCTGTTTTGTTATTGACAAGTCATGGACAGTTTCCTTTC  900

seq1  TGTTTTGGATCATTCACTAAAATCTTCACCATGTCCCTATTAATTACCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGGATCATTCACTAAAATCTTCACCATGTCCCTATTAATTACCTT  950

seq1  CTATAAAACAGTGGCATTTTATAGCAGGATCATTGCCTTCAAGTATTTTC  1000
      |||| ||||||||||||||||||||| ||||||||||||| |||||||||
seq2  CTAT-AAACAGTGGCATTTTATAGCA-GATCATTGCCTTC-AGTATTTTC  997

seq1  CAGGTGTTTAGACATCTTTTTATCCTTAACTTAAAGTTAAACCTTAGAAA  1050
      || ||| |||||||||||||||||  |||| ||||| |||||  ||| ||
seq2  CA-GTG-TTAGACATCTTTTTATC--TAAC-TAAAG-TAAAC--TAG-AA  1038

seq1  ATGTGTGTGGTTTATGTAAATAAGTAATTTTGCTTTTATGAATTAGAAAC  1100
      |||||||||| ||||||||   |||||  ||||||||||||  ||| |||
seq2  ATGTGTGTGG-TTATGTAA--TAGTAA--TTGCTTTTATGA--TAG-AAC  1080

seq1  TCAAGAAAACTGGGGTCAGTTTTGCAATGACATCACAGACTTCCTTTCTT  1150
      |||   ||||| |||||||  |||| |||||  | ||||||||  |||||
seq2  TCA--GAAACT-GGGTCAG--TTGC-ATGAC--CTCAGACTTC--TTCTT  1120

seq1  ATGGTTTATAAAGTACCAAGTTTACTTGGATCTTTAGTACTTGCTAC  1197
          |  ||||||| |  ||  ||| |||||||||||||||||||||
seq2  ----TGAATAAAGTTC--AG--TAC-TGGATCTTTAGTACTTGCTAC  1158

seq1: chr10_104053596_104054363
seq2: B6Ng01-083N12.g_70_621 (reverse)

seq1  AGTTCCTTTGTGATTGGGTTACCGCACTCAGGATGATACTCTCCAGGTCC  50
      ||||| ||||||||||||||||| ||||||||||||| | ||||||||||
seq2  AGTTCTTTTGTGATTGGGTTACCTCACTCAGGATGATGCCCTCCAGGTCC  50

seq1  ATCCATTTGCCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTCCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||      
seq2  ATCCATTTGCCTAGGAATTTCATAAATTCATTCTTTTTAATAGC------  94

seq1  TACATTTAATTTAATTAATGTAATTACAATTAATTAATTTATTAATTAAA  150
                                                        
seq2  --------------------------------------------------  94

seq1  TAATTTAATAATTTAATTGATAAATTAATTTAATTAATTAATTTAATTAA  200
                                                        
seq2  --------------------------------------------------  94

seq1  TTAAATTAAATAATAATTTAATAATAAATTAAATATTTTAAAATTAATAA  250
                                                        
seq2  --------------------------------------------------  94

seq1  TAATTTTATAAGTAAATAATTTAATTAATGTAATTTAATTAATGTAATTA  300
              | ||||                             |||    
seq2  --------TGAGTA-----------------------------GTA----  103

seq1  CATTACATTTAATAGCTCCATTGTGTAAATGTACCACATTTTCTGTATCT  350
                     |||||||||||||||||||||||||||||||||| 
seq2  ---------------CTCCATTGTGTAAATGTACCACATTTTCTGTATCC  138

seq1  ATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATTATA  400
      |||||||||||||| ||||||||  ||||||||||||  ||||   ||||
seq2  ATTCCTCTGTTGAGAGGCATCTGAATTCTTTCCAGCTTTTGGC---TATA  185

seq1  AATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGTTGG  450
      ||||||||||||||||| |||||||||||||||||   |||||  |||||
seq2  AATAAGGCTGCTATGAACATAGTGGAGCATGTGTC---CTTACAAGTTGG  232

seq1  GGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCGGT-  499
      | |||||||||||||||||||||| |||||||| || ||||||||| || 
seq2  GACATCTTCTGGATATATGCCCAGGAGAGGTATAGCAGGATCCTCCAGTA  282

seq1  AGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGTGG  549
      ||||||||||||||| |||||| ||||| |||||| ||||||||||||||
seq2  AGTACTATGTCCAATATTCTGAGGAACCACCAGACTGATTTCCAGAGTGG  332

seq1  TTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTC  599
      |||||||||| ||||||||||||| |||||||||||||||||| ||||||
seq2  TTGTACAAGCTTGCAATCCCACCAGCAATGGAGGAGTGTTCCTTTTTCTC  382

seq1  CACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA-T  648
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATT  432

seq1  TCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCC  698
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCC  482

seq1  TGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCGG  748
      ||||||||||||||| |||||||||||||||||| ||||| |||||||||
seq2  TGATGATTAAGGATGCTGAACATTTTTTCAGGTGTTTCTCAGCCATTCGG  532

seq1  TATTCCTCAGGTGAGAATTC  768
      | ||||||||||||||||||
seq2  TGTTCCTCAGGTGAGAATTC  552