BAC Information

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BAC

Clone NameB6Ng01-084B21
Chromosome10 (Build37)
Map Location 50,377,770 - 50,378,818
singlet/doubletsinglet
Overlap geneAscc3
Upstream geneGrik2, LOC629652
Downstream geneSim1, LOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084B21.bB6Ng01-084B21.g
ACCDH898179DH898180
length5571,046
definitionDH898179|Mus musculus domesticus DNA, BAC clone: B6Ng01-084B21, 5' end.DH898180|Mus musculus domesticus DNA, BAC clone: B6Ng01-084B21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
cttcttgtctcacatgaattggcactatgctggctatggtgtttgcagag
atgcccagcaggggacaaggaagggcataggaggagagaaagctaaaatt
agggaccattttaagggcagtatggaaacctaaatataaatgaaactgtc
aaataatgggggagagaagagtcccaaatggccatctcttgtcactaaat
aaaacttccagtatcaggattgagttctagctaattgaattgttggccaa
agtgatcccataggaatcctcaaataacccaacctaccactgacctgatc
acagggtccccaatggaggagttagaggaaggactgaagaaattgaaggg
gtttgcaaccccataggaagaacaatatcaaccaaccagacccctcagaa
ctcccagggactaagccgtcaaccaaggagtacacatggttccagctgca
tatgtagcagaggatagccttaacatacatcaatgggaggagaggtcctt
ggtcctatgaaggctagatagatgacccaatgtaggggaatggagggtgg
ggaggtg

gaattctctaattagggtgaaatttgaaatgggtttttgctgttttatat
aagatttttttagtgagactaaaatcacgtgtgatattctttctctgtgc
aacaattttcaaccaatgccatctgttttaaacgtttatgtttcaagtcg
tctctctgggtgtgggtctgtgctgtactcagcattgcattacctggtta
ttgtgaatgatgcagtcacctagcataggtgactggattctggaattgtg
aaggtgtatctgtaagggcctgctgtgcttatttcatcgtatctccaaaa
ctgaacaatcgtatcaacattgactatgacaatgatattgtaacaatata
gtgatgtatgtttattatgaagtatatggaatattctgaacaacatttga
ttttattcctttgcatatactataatcagaatttgatatttgtttgtttg
tttgtgtttgtttgtttgcttgggggaattttagtattaatttttagaca
atagtgaggacaaaacccaagcctggtgcatatcaggccaactctcaatc
agagatgtaagtttctacccccagtttttgaaatatattaaattaatttc
attgttttaaagctcttacgggtacttaatgtcaattccataagttcaga
taatagtagataaggaatacggtgtgtgtagtgggagaaggataatacat
ggtcttatgtatactgtgtaagtgatccaccattgagtcacatatcttgg
gcctgtatctcttatgcctgcacttttatatgataagacctctgttgacc
tcttaacctcatatccgtctcctgcagtataattttttattatttcattt
gatagcatacatgatatgttattctgaggtttttttttgtttgtttttgt
ttaattacttacatttatttaataaaaacattcctttggaaattactcat
acagttgaatcccacagagtatgataagaatccttggattgtcgtctacc
ctaaccactactcgatgtttgcatcatttttgcatgttaaccccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_50377770_50378818
seq2: B6Ng01-084B21.g_68_1113

seq1  GAATTCTCTAATTAGGGTGAAATTTGAAATGGGTTTTTGCTGTTTTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAATTAGGGTGAAATTTGAAATGGGTTTTTGCTGTTTTATAT  50

seq1  AAGATTTTTTTAGTGAGACTAAAATCACGTGTGATATTCTTTCTCTGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTTTTAGTGAGACTAAAATCACGTGTGATATTCTTTCTCTGTGC  100

seq1  AACAATTTTCAACCAATGCCATCTGTTTTAAACGTTTATGTTTCAAGTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTTTCAACCAATGCCATCTGTTTTAAACGTTTATGTTTCAAGTCG  150

seq1  TCTCTCTGGGTGTGGGTCTGTGCTGTACTCAGCATTGCATTACCTGGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGGGTGTGGGTCTGTGCTGTACTCAGCATTGCATTACCTGGTTA  200

seq1  TTGTGAATGATGCAGTCACCTAGCATAGGTGACTGGATTCTGGAATTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAATGATGCAGTCACCTAGCATAGGTGACTGGATTCTGGAATTGTG  250

seq1  AAGGTGTATCTGTAAGGGCCTGCTGTGCTTATTTCATCGTATCTCCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTATCTGTAAGGGCCTGCTGTGCTTATTTCATCGTATCTCCAAAA  300

seq1  CTGAACAATCGTATCAACATTGACTATGACAATGATATTGTAACAATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAATCGTATCAACATTGACTATGACAATGATATTGTAACAATATA  350

seq1  GTGATGTATGTTTATTATGAAGTATATGGAATATTCTGAACAACATTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGTATGTTTATTATGAAGTATATGGAATATTCTGAACAACATTTGA  400

seq1  TTTTATTCCTTTGCATATACTATAATCAGAATTTGATATTTGTTTGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCCTTTGCATATACTATAATCAGAATTTGATATTTGTTTGTTTG  450

seq1  TTTGTGTTTGTTTGTTTGCTTGGGGGAATTTTAGTATTAATTTTTAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTTTGTTTGTTTGCTTGGGGGAATTTTAGTATTAATTTTTAGACA  500

seq1  ATAGTGAGGACAAAACCCAAGCCTGGTGCATATCAGGCCAACTCTCAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGAGGACAAAACCCAAGCCTGGTGCATATCAGGCCAACTCTCAATC  550

seq1  AGAGATGTAAGTTTCTACCCCCAGTTTTTGAAATATATTAAATTAATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGTAAGTTTCTACCCCCAGTTTTTGAAATATATTAAATTAATTTC  600

seq1  ATTGTTTTAAAGCTCTTACGGGTACTTAATGTCAATTCCATAAGTTCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTAAAGCTCTTACGGGTACTTAATGTCAATTCCATAAGTTCAGA  650

seq1  TAATAGTAGATAAGGAATACGGTGTGTGTAGTGGGAGAAGGATAATACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTAGATAAGGAATACGGTGTGTGTAGTGGGAGAAGGATAATACAT  700

seq1  GGTCTTATGTATACTGTGTAAGTGATCCACCATTGAGTCACATATCTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTATGTATACTGTGTAAGTGATCCACCATTGAGTCACATATCTTGG  750

seq1  GCCTGTATCTCTTATGCCTGCACTTTTATATGATAAGACCTCTGTTGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTATCTCTTATGCCTGCACTTTTATATGATAAGACCTCTGTTGACC  800

seq1  TC-TAACCTCATATCCGTCTCCTGCAGTATAATTTTT--ATAATTCATTT  847
      || ||||||||||||||||||||||||||||||||||   || |||||||
seq2  TCTTAACCTCATATCCGTCTCCTGCAGTATAATTTTTTATTATTTCATTT  850

seq1  GATAGCATACATGATATGTTATTCTGAGGTTTTTTTTTTGTTTGTTTTGG  897
      ||||||||||||||||||||||||||||| |||||||||||||||||| |
seq2  GATAGCATACATGATATGTTATTCTGAGG-TTTTTTTTTGTTTGTTTTTG  899

seq1  TTAATTTACTTACATTTTATTTAATTAAATACATTCCTTTTGAAATTACT  947
      || | ||||||||| ||||||||| |||| |||||||||| |||||||||
seq2  TTTAATTACTTACA-TTTATTTAA-TAAAAACATTCCTTTGGAAATTACT  947

seq1  CATACAGGTTGAATCCACACAGAGTATGATAAGAATTCTTGGATTGTCTG  997
      |||||| ||||||||| ||||||||||||||||||| |||||||||||  
seq2  CATACA-GTTGAATCC-CACAGAGTATGATAAGAATCCTTGGATTGTCGT  995

seq1  CAACCTTACCCAACTACCTCGATG-TTGCTACATTTTTGCATGTTAACCC  1046
      | ||| || || |||| ||||||| ||||  |||||||||||||||||||
seq2  CTACCCTAACC-ACTA-CTCGATGTTTGCATCATTTTTGCATGTTAACCC  1043

seq1  CTA  1049
      |||
seq2  CTA  1046


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