BAC Information

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BAC

Clone NameB6Ng01-084G04
Chromosome10 (Build37)13 (Build37)
Map Location 104,053,903 - 104,054,36327,893,528 - 27,894,690
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084G04.bB6Ng01-084G04.g
ACCDH898362DH898363
length7691,152
definitionDH898362|Mus musculus domesticus DNA, BAC clone: B6Ng01-084G04, 5' end.DH898363|Mus musculus domesticus DNA, BAC clone: B6Ng01-084G04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,903 - 104,054,363)(27,893,528 - 27,894,690)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatgaacaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctactgggc
atatatccagaagttgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaagttcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttattaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaacacccatggaaggagttacagagccaaagtttggagctgagatgaa
aggatggaccatgtagaga
gaattcctgacgctgtagtcagcctgctgtggaactcctcagagatgcag
ctatctgtaactcatccttgctgcagtaagtaattcttcactaaaattct
ttcaaatgacaaccttacacattgaattgctttacaaggctggattggat
agtatacttttcctggttttattgttcctatatgctgatctggttcccag
cttttgtgcaactctttagagctgcagctgccttgagttcaactatgttc
ctgtcactaactcttcttcagaatttctccaactgacatggaacactgcc
ttatatatcaaagaaactgcttttagcaggtttgctttttggaattttgt
ttgtttgttttatgggtgctattgttctcacatatgcagtgaatggacat
ttgtccacaccttgcccagtgaagtgaaagtaatgtcagaaagacctgag
aaatattttctagctattgccctagaaaacaattgcacagcaagctgttg
catcattagttctgaaatggaagttttcttatttggagacatccagcaac
ggctagagacattttgcattgcctgagctgatgaaagtgcgaaagtggaa
tagtacctgggtgcattggtagagaccaggaaggactctgtttaacaatg
agtgataggagagttccagatcatggaaagatccaactctcagagtcaat
cttgtaaacatcgatgtgtccagtcagaatatgacagcaatagtggatac
aatttctaacagctacaaatgaagagtataaatgaacttaatcacactta
caatttgatggacatagtagataaagctagcaggtctggatctatacatc
ctgaagaatttcaggtatgcatagtactttttaatccaaaatttacctta
tattcacagggtatttttgatagtcttatttggagtatattttttttgtg
ttttccatgtataaatattattgagtatctaaatttctgatatatgtttc
aaattgcatttatcaaagctttgagaatcagagtttttcagactagtgtc
actgatacacattaccttttaatacaattgatgctgattataggattcga
atagaaaccactgattattaatttttttgttttttataaaatgattgatt
ac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053903_104054363
seq2: B6Ng01-084G04.b_43_513 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          |||||||||||| |||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || |||||||||||||||||||||| |||||||||||||| |||||||||
seq2  TCCATTCCTCTGTTGAGGGGCATCTAGGTTCTTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCTGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      ||||||| ||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGGGCAACTTCTGGATATATGCCCAGTAGAGGTATTGCTGGATCCTCCG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      ||||||||||||||| |||||||| |||||||||||| ||||||||||||
seq2  GTAGTACTATGTCCAGTTTTCTGAGGAACCGCCAGACTGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGTTGTACAAGCCTGCACTCCCACCAACAATGGAGGAGTGTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||| |||||||||||||||||||||||||| || ||||||||||
seq2  TCCACATCCACGCCAGCATCTGCTGTCACCTGAATTGTTCATCTTAGCCA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  400

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGATGATTAAGGATGTTGAACATTTTTTCAAGTGCTTCTCTGCCATTCG  450

seq1  GTATTCCTCAGGTGAGAATTC  461
      |||||||||||||||||||||
seq2  GTATTCCTCAGGTGAGAATTC  471

seq1: chr13_27893528_27894690
seq2: B6Ng01-084G04.g_69_1220

seq1  GAATTCCTGACGCTGTAGTCAGCCTGCTGTGGAACTCCTCAGAGATGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGACGCTGTAGTCAGCCTGCTGTGGAACTCCTCAGAGATGCAG  50

seq1  CTATCTGTAACTCATCCTTGCTGCAGTAAGTAATTCTTCACTAAAATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGTAACTCATCCTTGCTGCAGTAAGTAATTCTTCACTAAAATTCT  100

seq1  TTCAAATGACAACCTTACACATTGAATTGCTTTACAAGGCTGGATTGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATGACAACCTTACACATTGAATTGCTTTACAAGGCTGGATTGGAT  150

seq1  AGTATACTTTTCCTGGTTTTATTGTTCCTATATGCTGATCTGGTTCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACTTTTCCTGGTTTTATTGTTCCTATATGCTGATCTGGTTCCCAG  200

seq1  CTTTTGTGCAACTCTTTAGAGCTGCAGCTGCCTTGAGTTCAACTATGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTGCAACTCTTTAGAGCTGCAGCTGCCTTGAGTTCAACTATGTTC  250

seq1  CTGTCACTAACTCTTCTTCAGAATTTCTCCAACTGACATGGAACACTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACTAACTCTTCTTCAGAATTTCTCCAACTGACATGGAACACTGCC  300

seq1  TTATATATCAAAGAAACTGCTTTTAGCAGGTTTGCTTTTTGGAATTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATCAAAGAAACTGCTTTTAGCAGGTTTGCTTTTTGGAATTTTGT  350

seq1  TTGTTTGTTTTATGGGTGCTATTGTTCTCACATATGCAGTGAATGGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTTATGGGTGCTATTGTTCTCACATATGCAGTGAATGGACAT  400

seq1  TTGTCCACACCTTGCCCAGTGAAGTGAAAGTAATGTCAGAAAGACCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCACACCTTGCCCAGTGAAGTGAAAGTAATGTCAGAAAGACCTGAG  450

seq1  AAATATTTTCTAGCTATTGCCCTAGAAAACAATTGCACAGCAAGCTGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTTCTAGCTATTGCCCTAGAAAACAATTGCACAGCAAGCTGTTG  500

seq1  CATCATTAGTTCTGAAATGGAAGTTTTCTTATTTGGAGACATCCAGCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTAGTTCTGAAATGGAAGTTTTCTTATTTGGAGACATCCAGCAAC  550

seq1  GGCTAGAGACATTTTGCATTGCCTGAGCTGATGAAAGTGCGAAAGTGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGAGACATTTTGCATTGCCTGAGCTGATGAAAGTGCGAAAGTGGAA  600

seq1  TAGTACCTGGGTGCATTGGTAGAGACCAGGAAGGACTCTGTTTAACAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACCTGGGTGCATTGGTAGAGACCAGGAAGGACTCTGTTTAACAATG  650

seq1  AGTGATAGGAGAGTTCCAGATCATGGAAAGATCCAACTCTCAGAGTCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATAGGAGAGTTCCAGATCATGGAAAGATCCAACTCTCAGAGTCAAT  700

seq1  CTTGTAAACATCGATGTGTCCAGTCAGAATATGACAGCAATAGTGGATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAACATCGATGTGTCCAGTCAGAATATGACAGCAATAGTGGATAC  750

seq1  AATTTCTAACAGCTACAAAATGAAGAGTATAAATGAACTTAATCACACTT  800
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AATTTCTAACAGCTAC-AAATGAAGAGTATAAATGAACTTAATCACACTT  799

seq1  ACAATTTGATGGACATAGTAGATAAAGCTAGCAGGTCTGGATCTATACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTGATGGACATAGTAGATAAAGCTAGCAGGTCTGGATCTATACAT  849

seq1  CCTGAAGAATTTCAGGTATGCATAGTACTTTTTAATCCAAAATTTACCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGAATTTCAGGTATGCATAGTACTTTTTAATCCAAAATTTACCTT  899

seq1  ATATTCACAGGGTATTTTTGATAGTCTTATTTGGAGTATATTTTTTTTTG  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATATTCACAGGGTATTTTTGATAGTCTTATTTGGAGTATA-TTTTTTTTG  948

seq1  TGTTTTCCATGTATAAATATTATTGAGTATCTAAATTTCTGATATATGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCCATGTATAAATATTATTGAGTATCTAAATTTCTGATATATGTT  998

seq1  TCAAATTGCATTTATCAAAGCTTTGAGAATCAAGAGTTTTTTCAGACTAG  1050
      ||||||||||||||||||||||||||||||| |||| |||||||||||||
seq2  TCAAATTGCATTTATCAAAGCTTTGAGAATC-AGAG-TTTTTCAGACTAG  1046

seq1  TGTCACTGAATACACATTACCTTTATATAC-ATTGATGCTGATTCATAGG  1099
      |||||||| |||||||||||||||  |||| ||||||||||||| |||||
seq2  TGTCACTG-ATACACATTACCTTTTAATACAATTGATGCTGATT-ATAGG  1094

seq1  ATTCAGACTAGATACCACTGATATATTAATTTTTTTTGTTTTTTATAAAA  1149
      |||| || |||| ||||||||| |||||| ||||||||||||||||  ||
seq2  ATTC-GAATAGAAACCACTGAT-TATTAA-TTTTTTTGTTTTTTAT--AA  1139

seq1  AATGAATTGATTAC  1163
      |||| |||||||||
seq2  AATG-ATTGATTAC  1152