BAC Information

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BAC

Clone NameB6Ng01-084I02
Chromosome10 (Build37)
Map Location 77,709,655 - 77,871,747
singlet/doubletdoublet
Overlap geneAgpat3, LOC100041500, Rrp1
Upstream genePofut2, Adarb1, 1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243, LOC670895, Krtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl, D10Jhu81e, Pwp2, Tmem1
Downstream geneCstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084I02.bB6Ng01-084I02.g
ACCDH898439DH898440
length1,1681,161
definitionDH898439|Mus musculus domesticus DNA, BAC clone: B6Ng01-084I02, 5' end.DH898440|Mus musculus domesticus DNA, BAC clone: B6Ng01-084I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,709,655 - 77,710,837)(77,870,595 - 77,871,747)
sequence
gaattctgcttcacaggaatgggtggcagtggggcttgtcaggaacaaca
gggacactcaggccaaacagtacaacattcagctgagacactatagtaag
gaccgtatcaccagcccacaggctccctctgcaaagtgatagaaggactt
ccgactttacaggtaagtctcttaccccgattccatagcaaccctttaac
agcttaaactcaagtcttagcctagggactgtatatctcaaaggctgtgg
ccaggcctggtcttaaagccaaaacttgtcagtccctgtcctccaacaaa
gcaatgacttgatatgatctgatcaagtttggagatggagtcctggcagt
cagagggactggtgagggggcaccttgaatagtctctaacacaaacaaac
ctacaggagctcatgacggggaaaggctagtggagctgtgagctagaatg
gaagacaaggcctagataatccagaaactgtgcggtgtattgcttatcaa
agtccaacgggcatcaagaaatgactggacaggaacaggaagtgtgaggc
tcctccaagacatacaatctcaactgaaagcagctatgacccagaactgt
ttacaaaggcaactataaaatgtatattcaagggactaaattaatatgaa
tgagggaaggctgcagcagagtaacaaaatattttcttttttatttcatt
ttatttacttttatgtgtgttttgcctgcatgtatgtctgtgtaacatgg
acatgcctggtgcctgcagaggccagaaatgggcactggatcccctggga
ctagagttgcagatgggtgtaagccaccatgtaggtgctgggaatcaacc
caggtcctctggaagagcagccaggctcttaccactgaaccatctcctca
gacctatagcagaagtattgtaaatgtatcaaatggcttgaaagatagct
catggttttaatcttgctgctattgcagagacccaggttcagttcccagc
tcttcacattggctgccacccatctcatgtactttcagtttcaggactct
gaacttttctcagtacctctcagaacccttcaacatgtgtgcacacacgt
agttaaaataatattttccgtcgaattcatatctataatgataccatttt
tcacctgcatgtatgcct
gaattcaaagcaggagccttgcctcagctctcccagaggaagtaaagcca
ttctgaccaccagtgagccctgggcctagcacaaggcagaaaggggactt
gatcacccccatctgtgaagatcccttctggctgaggacttggtccttgg
ccctctgtctgcattgtgtctcctgcttgctttcttctcctgtgtcgtgc
tcctctcggccaatgaattgctttacaaggcccatttccttttttgagag
aatttttttttctcaaaaattgtgaggcccagctgcaaccttggctttgt
agtaagtctgccttcttcaggaagagcccagcgcctgccctgaccattcc
aatcagctctaatctgtagtttctgctcactcagccaagtacagagcttt
gatctccaaggcctcaatcacgccccgtgggacagacagaggccttacct
tcaggaggcttctgggacacagggaggctcgatgggttggctgtcttctt
actaacgtgcgtttcttttgtgtcctagctcatgaggatggtcctaagtg
agtcactgaaggctgtgaaagcccggggatgggacgagaggtaggtccgc
cctgagagtcagactcccagctcccaggcagctgagggctgggacctcca
tcttctggctcaccccaggaatcccaaggtcctcttgtgatgccttgttg
taggcaggtgacctgtgcatcactttggtaccacagtggtgctgaattaa
agataagtttatgaagtgaaatgggttcagatgatgctgtcttcctccaa
ctgtgctatcccagttttctatagtcgggcagaatcgtgttctctgctcc
caacacgtgtactgcccaaaggcctactttttatttagatttatttattt
ataattaatttttatttattttatttttatttatataatttaatttatct
atttatgatatgagtacactatagctgtcttcagaccacaagaagagggc
atcagaatcccatacagatgggttatgagccacatgtagtggctgggaaa
tgaacttaaggatcttctgtaagaacagtcagtgttctttaccttctgaa
gcattctcttcagttccctctaagggctccaattttaaccgggtaatggt
taccatgtgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_77709655_77710837
seq2: B6Ng01-084I02.b_43_1210

seq1  GAATTCTGCTTCACAGGAATGGGTGGCAGTGGGGCTTGTCAGGAACAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTTCACAGGAATGGGTGGCAGTGGGGCTTGTCAGGAACAACA  50

seq1  GGGACACTCAGGCCAAACAGTACAACATTCAGCTGAGACACTATAGTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACTCAGGCCAAACAGTACAACATTCAGCTGAGACACTATAGTAAG  100

seq1  GACCGTATCACCAGCCCACAGGCTCCCTCTGCAAAGTGATAGAAGGACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGTATCACCAGCCCACAGGCTCCCTCTGCAAAGTGATAGAAGGACTT  150

seq1  CCGACTTTACAGGTAAGTCTCTTACCCCGATTCCATAGCAACCCTTTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACTTTACAGGTAAGTCTCTTACCCCGATTCCATAGCAACCCTTTAAC  200

seq1  AGCTTAAACTCAAGTCTTAGCCTAGGGACTGTATATCTCAAAGGCTGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAAACTCAAGTCTTAGCCTAGGGACTGTATATCTCAAAGGCTGTGG  250

seq1  CCAGGCCTGGTCTTAAAGCCAAAACTTGTCAGTCCCTGTCCTCCAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCTGGTCTTAAAGCCAAAACTTGTCAGTCCCTGTCCTCCAACAAA  300

seq1  GCAATGACTTGATATGATCTGATCAAGTTTGGAGATGGAGTCCTGGCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGACTTGATATGATCTGATCAAGTTTGGAGATGGAGTCCTGGCAGT  350

seq1  CAGAGGGACTGGTGAGGGGGCACCTTGAATAGTCTCTAACACAAACAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGACTGGTGAGGGGGCACCTTGAATAGTCTCTAACACAAACAAAC  400

seq1  CTACAGGAGCTCATGACGGGGAAAGGCTAGTGGAGCTGTGAGCTAGAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGGAGCTCATGACGGGGAAAGGCTAGTGGAGCTGTGAGCTAGAATG  450

seq1  GAAGACAAGGCCTAGATAATCCAGAAACTGTGCGGTGTATTGCTTATCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAAGGCCTAGATAATCCAGAAACTGTGCGGTGTATTGCTTATCAA  500

seq1  AGTCCAACGGGCATCAAGAAATGACTGGACAGGAACAGGAAGTGTGAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAACGGGCATCAAGAAATGACTGGACAGGAACAGGAAGTGTGAGGC  550

seq1  TCCTCCAAGACATACAATCTCAACTGAAAGCAGCTATGACCCAGAACTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAAGACATACAATCTCAACTGAAAGCAGCTATGACCCAGAACTGT  600

seq1  TTACAAAGGCAACTATAAAATGTATATTCAAGGGACTAAATTAATATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAGGCAACTATAAAATGTATATTCAAGGGACTAAATTAATATGAA  650

seq1  TGAGGGAAGGCTGCAGCAGAGTAACAAAATATTTTCTTTTTTATTTCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAAGGCTGCAGCAGAGTAACAAAATATTTTCTTTTTTATTTCATT  700

seq1  TTATTTACTTTTATGTGTGTTTTGCCTGCATGTATGTCTGTGTAACATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACTTTTATGTGTGTTTTGCCTGCATGTATGTCTGTGTAACATGG  750

seq1  ACATGCCTGGTGCCTGCAGAGGCCAGAAATGGGCACTGGATCCCCTGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCTGGTGCCTGCAGAGGCCAGAAATGGGCACTGGATCCCCTGGGA  800

seq1  CTAGAGTTGCAGATGGGTGTAAGCCACCATGTAGGTGCTGGGAATCAAAC  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTAGAGTTGCAGATGGGTGTAAGCCACCATGTAGGTGCTGGGAATC-AAC  849

seq1  CCAGGTCCTCTGGAAGAGCAGCCAGGGCTCTTAACCACTGAACCATCTCC  900
      |||||||||||||||||||||||| ||||||| |||||||||||||||||
seq2  CCAGGTCCTCTGGAAGAGCAGCCA-GGCTCTT-ACCACTGAACCATCTCC  897

seq1  CCAGACCTATAGCAGGAAGTATTGTAAATGTATCAAATGGCTTGAAAGAT  950
       ||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCAGACCTATAGCA-GAAGTATTGTAAATGTATCAAATGGCTTGAAAGAT  946

seq1  AGCTCAATGGTTTTAATCTTGCTGCTATTGCAGAAGACCCAGGTTCAGTT  1000
      ||||| ||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGCTC-ATGGTTTTAATCTTGCTGCTATTGCAG-AGACCCAGGTTCAGTT  994

seq1  CCCAGCTC-TCACATTGGGCTGCACACAACCACATGTAACTCCAGTTCCA  1049
      |||||||| ||||||| ||||||   | | | ||||||  | ||||| ||
seq2  CCCAGCTCTTCACATT-GGCTGCCACCCATCTCATGTACTTTCAGTTTCA  1043

seq1  GGGACTCTGATACTTTCTTCAGGA-CTCTCAGGAAACCCTCACACATGTG  1098
       ||||||||| |||||  |||| | |||||||  ||||||   |||||| 
seq2  -GGACTCTGA-ACTTTTCTCAGTACCTCTCAG--AACCCTTCAACATGT-  1088

seq1  GCACACACACGTAAGTAAAAATAAATATTTCCCCCCAGATTCATTTATCT  1148
      |  ||||||||| ||| ||||| ||||||| ||  |  |||||  |||||
seq2  GTGCACACACGT-AGTTAAAAT-AATATTTTCCGTCGAATTCA--TATCT  1134

seq1  ATTATGTATACAGTTTTCCACCTGCATGTATGCCT  1183
      || ||| ||||  |||| |||||||||||||||||
seq2  ATAATG-ATACCATTTTTCACCTGCATGTATGCCT  1168

seq1: chr10_77870595_77871747
seq2: B6Ng01-084I02.g_70_1230 (reverse)

seq1  AGCACATGGTACACCATACACCTGTTAAAA-TGGAGGCCTTTGAGGGGAC  49
      ||||||||||| |||||   || ||||||| ||||| |||| ||||| ||
seq2  AGCACATGGTA-ACCATTACCCGGTTAAAATTGGAGCCCTTAGAGGGAAC  49

seq1  TGGAGAG-ATGGCTCAG-AGGTTAAGAGCACTGACTGTTCTTTCAG-AGG  96
      || |||| |||  |||| |||| |||| |||||||||||||| ||| || 
seq2  TGAAGAGAATGCTTCAGAAGGTAAAGAACACTGACTGTTCTTACAGAAGA  99

seq1  TCC-TGAGTTCAATTCCCAGCAACTACATGGTGGCTCATAA-CCATCTGT  144
      ||| | |||||| |||||||| ||||||| ||||||||||| ||||||||
seq2  TCCTTAAGTTCATTTCCCAGCCACTACAT-GTGGCTCATAACCCATCTGT  148

seq1  AATGGGA-TCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTATAGTGT  193
       |||||| |||||||||||||||| ||| |||||||||||||||||||||
seq2  -ATGGGATTCTGATGCCCTCTTCTTGTG-GTCTGAAGACAGCTATAGTGT  196

seq1  ACTCATATACAT-AATAGATAAA-TAAATTATATAAATAAAAATAAAATA  241
      |||||||| ||| |||||||||| ||||||||||||||||||||||||||
seq2  ACTCATAT-CATAAATAGATAAATTAAATTATATAAATAAAAATAAAATA  245

seq1  AATAAAAAATAATTATAAATAAATAAATACTAAATAAAAAGTAGGCCTTT  291
      |||||||| ||||||||||||||||||| |||||||||||||||||||||
seq2  AATAAAAATTAATTATAAATAAATAAAT-CTAAATAAAAAGTAGGCCTTT  294

seq1  -GGCAGTACACGTGTTGGGAGCAGAGCACACGATTCTGCCCGACTATAGA  340
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGGCAGTACACGTGTTGGGAGCAGAGAACACGATTCTGCCCGACTATAGA  344

seq1  AAACTGGGATAGCACAGTTGGAGG-AGACAGCATCATCTGAA-CCATTTC  388
      |||||||||||||||||||||||| ||||||||||||||||| |||||||
seq2  AAACTGGGATAGCACAGTTGGAGGAAGACAGCATCATCTGAACCCATTTC  394

seq1  ACTTCATAAACTTATC-TTAATTCAGCACCACTGTGGTACC-AAGTGATG  436
      |||||||||||||||| |||||||||||||||||||||||| ||||||||
seq2  ACTTCATAAACTTATCTTTAATTCAGCACCACTGTGGTACCAAAGTGATG  444

seq1  CACAGGTCACCTGCCTACAACAAGGCATCACAAGAGGACCTTGGGATTCC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTCACCTGCCTACAACAAGGCATCACAAGAGGACCTTGGGATTCC  494

seq1  TGGGGTGAGCCAGAAGATGGAGGTCCCAGCCCTCAGCTGCCTGGGAGCTG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGAGCCAGAAGATGGAGGTCCCAGCCCTCAGCTGCCTGGGAGCTG  544

seq1  GGAGTCTGACTCTCAGGGCGGACCTACCTCTCGTCCCATCCCCGGGCTTT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCTGACTCTCAGGGCGGACCTACCTCTCGTCCCATCCCCGGGCTTT  594

seq1  CACAGCCTTCAGTGACTCACTTAGGACCATCCTCATGAGCTAGGACACAA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCTTCAGTGACTCACTTAGGACCATCCTCATGAGCTAGGACACAA  644

seq1  AAGAAACGCACGTTAGTAAGAAGACAGCCAACCCATCGAGCCTCCCTGTG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACGCACGTTAGTAAGAAGACAGCCAACCCATCGAGCCTCCCTGTG  694

seq1  TCCCAGAAGCCTCCTGAAGGTAAGGCCTCTGTCTGTCCCACGGGGCGTGA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAAGCCTCCTGAAGGTAAGGCCTCTGTCTGTCCCACGGGGCGTGA  744

seq1  TTGAGGCCTTGGAGATCAAAGCTCTGTACTTGGCTGAGTGAGCAGAAACT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCCTTGGAGATCAAAGCTCTGTACTTGGCTGAGTGAGCAGAAACT  794

seq1  ACAGATTAGAGCTGATTGGAATGGTCAGGGCAGGCGCTGGGCTCTTCCTG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTAGAGCTGATTGGAATGGTCAGGGCAGGCGCTGGGCTCTTCCTG  844

seq1  AAGAAGGCAGACTTACTACAAAGCCAAGGTTGCAGCTGGGCCTCACAATT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGCAGACTTACTACAAAGCCAAGGTTGCAGCTGGGCCTCACAATT  894

seq1  TTTGAGAAAAAAAAATTCTCTCAAAAAAGGAAATGGGCCTTGTAAAGCAA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAAAAAAAAATTCTCTCAAAAAAGGAAATGGGCCTTGTAAAGCAA  944

seq1  TTCATTGGCCGAGAGGAGCACGACACAGGAGAAGAAAGCAAGCAGGAGAC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGGCCGAGAGGAGCACGACACAGGAGAAGAAAGCAAGCAGGAGAC  994

seq1  ACAATGCAGACAGAGGGCCAAGGACCAAGTCCTCAGCCAGAAGGGATCTT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCAGACAGAGGGCCAAGGACCAAGTCCTCAGCCAGAAGGGATCTT  1044

seq1  CACAGATGGGGGTGATCAAGTCCCCTTTCTGCCTTGTGCTAGGCCCAGGG  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATGGGGGTGATCAAGTCCCCTTTCTGCCTTGTGCTAGGCCCAGGG  1094

seq1  CTCACTGGTGGTCAGAATGGCTTTACTTCCTCTGGGAGAGCTGAGGCAAG  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGGTGGTCAGAATGGCTTTACTTCCTCTGGGAGAGCTGAGGCAAG  1144

seq1  GCTCCTGCTTTGAATTC  1153
      |||||||||||||||||
seq2  GCTCCTGCTTTGAATTC  1161