BAC Information

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BAC

Clone NameB6Ng01-085F20
Chromosome10 (Build37)
Map Location 77,588,752 - 77,697,175
singlet/doubletdoublet
Overlap geneD10Jhu81e, Pwp2, Tmem1
Upstream geneCol18a1, LOC665762, Pofut2, Adarb1, 1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243, LOC670895, Krtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl
Downstream geneAgpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085F20.bB6Ng01-085F20.g
ACCDH899056DH899057
length1,0031,033
definitionDH899056|Mus musculus domesticus DNA, BAC clone: B6Ng01-085F20, 5' end.DH899057|Mus musculus domesticus DNA, BAC clone: B6Ng01-085F20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,696,163 - 77,697,175)(77,588,752 - 77,589,791)
sequence
gaattctaccttctaccctagcatctccttacctaagcatcccaatgtaa
cttaagaaaaaaaaaaaaaacagtttatccctttattggaaataacatgt
ttgacagaatggcttggtgtgtaaaggcacctgcttgactttgatccctc
aggctcagacaatggaaagagagaaccaactcctgcaagctgacctctga
cctccacatgcacacatgcatgtacagtgtagtcattatcccccccagta
aattttttaaaattaatttaaacattttaaaaaggatgtgaacattctgt
attccccactctcaggtgagagattgctgactctgctggtttctgtacct
ctgttctcccacattgtgcccttggctgggctgggctgggctgtacctgg
agtatgggcccaatctgaggagaccaatgtgctcttggtcctgttccttc
tctgggtgagatttgtgataaagtccacgaaaagtgtggcgccatgccag
gtgctatgtaacgttgctggacttgccaggctcttcttccttccttgttc
agtttggttttttgagacagggtttctctgtatagccctggctctctggg
actcactttgtagaccaggctggcctcgaactcagaaatccgcctgcctc
tgcctcccgagtgctgggattaaaggtgtgcgccaccacgcccagccctt
gttcagttttgaagcttcagttagaccctattgaaaaggttgtttttaaa
caaagactttacggtgaggaggagagaacatgggtataggaagtaaggaa
cctttggtctgagctagcaggctcttcctaacatacatgtattcacccaa
gaagtcaccattctcttgttgctctgacaaaaaacctacaacaggtagtc
atccaggggctcctcaggtgtagcactactgtgtaagcctgatgaccgaa
ttcaagtctacgtaccagagaatgacagcaaagggcgctcctgaaagctg
tct
gaattcagcatagtgacacactattggcttattcaaacatcagcagaaaa
attacatgtacatgcagggtgtcagagttctgtgagttgttgactcagtt
aaggtagccctgttatgtcctcacattcctctttatctttaaggttaagc
tgttcccaggaatgttttaactacggggcatacccaggtttgtttttctt
ttttctcagccccaggcagcctctaggctcataaataaccagcaatttct
gagtactttttatgacttacaggtcttgaaatttcatctttctttcaatg
cctcagggtttaagggcactggctgttcttacagaggaccagtgttcaat
ccccagcacccacatgggagctcacaaccattgttaactccaattctaag
gagcgcaaacccttggcctccacaggcacagcacatacaatgtgcacaga
catacatgcaggctaaacgcccacacacataaaaatgaaaatgacgtgtt
tgggtgtcagattgacaaagggggggggggagctgggttgacgaatctca
ctgtcaatgagatttaagataatcatagaaccacatctctgggtgtctct
gtgagggcttttccagaaagatttaaagaggcaggaagacctacgctgag
tatgggtgataccatcctatgggcctgattctggattgaataacaaggag
aaaaggagttgaacaccagcctgttgtatgactggctgcttccctcccag
ctccaagctcccagaataatgcctcagactcgaaatatatttataaatac
ccaagtcatacagttaggctccttccctgactagctaataatttaaaaca
acccatttacatttatctacattctgccacatggctggctacctctgctc
agatgccacgcatctgtgttcctcacatctctcttggctctcaagtctgg
ctctatttcagatcattctgcctttgggatgccccaccttctactctctc
aatccataagctaaggtgtctaattgaaggtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_77696163_77697175
seq2: B6Ng01-085F20.b_48_1050 (reverse)

seq1  AGACAGCTCTCCAGAAAGCGCCCCTTTGCTGTCTATCCCTCCTGGTTCCT  50
      |||||||| ||  |  |||| ||||||||||||  ||    ||||| | |
seq2  AGACAGCTTTCAGG--AGCG-CCCTTTGCTGTCATTC---TCTGGTACGT  44

seq1  AGAACTTGAATTCGGGTCATCAGGCTTACACAGTAAGTGCCTACACCTGA  100
      || |||||||||| |||||||||||||||||||| |||| ||||||||||
seq2  AG-ACTTGAATTC-GGTCATCAGGCTTACACAGT-AGTG-CTACACCTGA  90

seq1  GGAGCCCCCTGGATGACTCCAGTTTGTAGG-TTTTTGTCAGAGCAAACAG  149
      |||| ||||||||||||| |   ||||||| ||||||||||||| |||| 
seq2  GGAG-CCCCTGGATGACTACCTGTTGTAGGTTTTTTGTCAGAGC-AACAA  138

seq1  GAGCATTGTGACTTCTTGGGTGACT-CCTGTATGTTAAGAAGAGCCCTGC  198
      ||| || |||||||||||||||| | | ||||||||| |||||| |||||
seq2  GAGAATGGTGACTTCTTGGGTGAATACATGTATGTTAGGAAGAG-CCTGC  187

seq1  TAGCTCTGGACCAAGGTTCCTTACTTCCT-TTCCCATGTTCTCTCCTCCT  247
      |||||| |  | ||||||||||||||||| | ||||||||||||||||||
seq2  TAGCTCAGACCAAAGGTTCCTTACTTCCTATACCCATGTTCTCTCCTCCT  237

seq1  CACCCTAAAGTCTTTGTTTAAAAACAACCTTTTCAATAGGGTCTAACTGA  297
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTAAAGTCTTTGTTTAAAAACAACCTTTTCAATAGGGTCTAACTGA  287

seq1  AGCTTCAAAACTGAACAAGGGCTGGGCGTGGTGGCGCACACCTTTAATCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCAAAACTGAACAAGGGCTGGGCGTGGTGGCGCACACCTTTAATCC  337

seq1  CAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCT  387

seq1  GGTCTACAAAGTGAGTCCCAGAGAGCCAGGGCTATACAGAGAAACCCTGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACAAAGTGAGTCCCAGAGAGCCAGGGCTATACAGAGAAACCCTGT  437

seq1  CTCAAAAAACCAAACTGAACAAGGAAGGAAGAAGAGCCTGGCAAGTCCAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAAACCAAACTGAACAAGGAAGGAAGAAGAGCCTGGCAAGTCCAG  487

seq1  CAACGTTACATAGCACCTGGCATGGCGCCACACTTTTCGTGGACTTTATC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGTTACATAGCACCTGGCATGGCGCCACACTTTTCGTGGACTTTATC  537

seq1  ACAAATCTCACCCAGAGAAGGAACAGGACCAAGAGCACATTGGTCTCCTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCTCACCCAGAGAAGGAACAGGACCAAGAGCACATTGGTCTCCTC  587

seq1  AGATTGGGCCCATACTCCAGGTACAGCCCAGCCCAGCCCAGCCAAGGGCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGGGCCCATACTCCAGGTACAGCCCAGCCCAGCCCAGCCAAGGGCA  637

seq1  CAATGTGGGAGAACAGAGGTACAGAAACCAGCAGAGTCAGCAATCTCTCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGGGAGAACAGAGGTACAGAAACCAGCAGAGTCAGCAATCTCTCA  687

seq1  CCTGAGAGTGGGGAATACAGAATGTTCACATCCTTTTTAAAATGTTTAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAGTGGGGAATACAGAATGTTCACATCCTTTTTAAAATGTTTAAA  737

seq1  TTAATTTTAAAAAATTTACTGGGGGGGATAATGACTACACTGTACATGCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTAAAAAATTTACTGGGGGGGATAATGACTACACTGTACATGCA  787

seq1  TGTGTGCATGTGGAGGTCAGAGGTCAGCTTGCAGGAGTTGGTTCTCTCTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCATGTGGAGGTCAGAGGTCAGCTTGCAGGAGTTGGTTCTCTCTT  837

seq1  TCCATTGTCTGAGCCTGAGGGATCAAAGTCAAGCAGGTGCCTTTACACAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGTCTGAGCCTGAGGGATCAAAGTCAAGCAGGTGCCTTTACACAC  887

seq1  CAAGCCATTCTGTCAAACATGTTATTTCCAATAAAGGGATAAACTGTTTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCATTCTGTCAAACATGTTATTTCCAATAAAGGGATAAACTGTTTT  937

seq1  TTTTTTTTTTCTTAAGTTACATTGGGATGCTTAGGTAAGGAGATGCTAGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTCTTAAGTTACATTGGGATGCTTAGGTAAGGAGATGCTAGG  987

seq1  GTAGAAGGTAGAATTC  1013
      ||||||||||||||||
seq2  GTAGAAGGTAGAATTC  1003

seq1: chr10_77588752_77589791
seq2: B6Ng01-085F20.g_67_1099

seq1  GAATTCAGCATAGTGACACACTATTGGCTTATTCAAACATCAGCAGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATAGTGACACACTATTGGCTTATTCAAACATCAGCAGAAAA  50

seq1  ATTACATGTACATGCAGGGTGTCAGAGTTCTGTGAGTTGTTGACTCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATGTACATGCAGGGTGTCAGAGTTCTGTGAGTTGTTGACTCAGTT  100

seq1  AAGGTAGCCCTGTTATGTCCTCACATTCCTCTTTATCTTTAAGGTTAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGCCCTGTTATGTCCTCACATTCCTCTTTATCTTTAAGGTTAAGC  150

seq1  TGTTCCCAGGAATGTTTTAACTACGGGGCATACCCAGGTTTGTTTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCAGGAATGTTTTAACTACGGGGCATACCCAGGTTTGTTTTTCTT  200

seq1  TTTTCTCAGCCCCAGGCAGCCTCTAGGCTCATAAATAACCAGCAATTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCAGCCCCAGGCAGCCTCTAGGCTCATAAATAACCAGCAATTTCT  250

seq1  GAGTACTTTTTATGACTTACAGGTCTTGAAATTTCATCTTTCTTTCAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTTTTTATGACTTACAGGTCTTGAAATTTCATCTTTCTTTCAATG  300

seq1  CCTCAGGGTTTAAGGGCACTGGCTGTTCTTACAGAGGACCAGTGTTCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGGTTTAAGGGCACTGGCTGTTCTTACAGAGGACCAGTGTTCAAT  350

seq1  CCCCAGCACCCACATGGGAGCTCACAACCATTGTTAACTCCAATTCTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCACCCACATGGGAGCTCACAACCATTGTTAACTCCAATTCTAAG  400

seq1  GAGCGCAAACCCTTGGCCTCCACAGGCACAGCACATACAATGTGCACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGCAAACCCTTGGCCTCCACAGGCACAGCACATACAATGTGCACAGA  450

seq1  CATACATGCAGGCTAAACGCCCACACACATAAAAATGAAAATGACGTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATGCAGGCTAAACGCCCACACACATAAAAATGAAAATGACGTGTT  500

seq1  TGGGTGTCAGATTGACAAAGGGGGGGGGGGAGCTGGGTTGACGAATCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTCAGATTGACAAAGGGGGGGGGGGAGCTGGGTTGACGAATCTCA  550

seq1  CTGTCAATGAGATTTAAGATAATCATAGAACCACATCTCTGGGTGTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAATGAGATTTAAGATAATCATAGAACCACATCTCTGGGTGTCTCT  600

seq1  GTGAGGGCTTTTCCAGAAAGATTTAAAGAGGCAGGAAGACCTACGCTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGCTTTTCCAGAAAGATTTAAAGAGGCAGGAAGACCTACGCTGAG  650

seq1  TATGGGTGATACCATCCTATGGGCCTGATTCTGGATTGAATAACAAGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTGATACCATCCTATGGGCCTGATTCTGGATTGAATAACAAGGAG  700

seq1  AAAAGGAGTTGAACACCAGCCTGTTGTATGACTGGCTGCTTCCCTCCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAGTTGAACACCAGCCTGTTGTATGACTGGCTGCTTCCCTCCCAG  750

seq1  CTCCAAGCTCCCAGAATAATGCCTCAGACTCGAAATATATTTATAAATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGCTCCCAGAATAATGCCTCAGACTCGAAATATATTTATAAATAC  800

seq1  CCAAGTCATACAGTTAGGCTCCTTCCCTGACTAGCTAATAATTTAAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCATACAGTTAGGCTCCTTCCCTGACTAGCTAATAATTTAAAACA  850

seq1  ACCCATTTACATTTATCTACATTCTGCCACATGGCTGGCTACCTCTGCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTTACATTTATCTACATTCTGCCACATGGCTGGCTACCTCTGCTC  900

seq1  AGATGCCACGCATCTGTGTTCCTCACATCTCTCTTGGCTCTCAAGTCTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCACGCATCTGTGTTCCTCACATCTCTCTTGGCTCTCAAGTCTGG  950

seq1  CTCTATTTCAGAATCATTTCTGCCTTTGGGATGCCCCACCTTCTACTCTC  1000
      ||||||||||| |||| |||||||||||||||||||||||||||||||||
seq2  CTCTATTTCAG-ATCA-TTCTGCCTTTGGGATGCCCCACCTTCTACTCTC  998

seq1  TCCATTCCTATAAGCTATAGGTGTTTTAATTGACAGGTGA  1040
      || ||  | |||||||| ||||| | ||||||| ||||||
seq2  TCAAT--CCATAAGCTA-AGGTG-TCTAATTGA-AGGTGA  1033