BAC Information

Click to search

BAC

Clone NameB6Ng01-086B08
Chromosome10 (Build37)
Map Location 13,649,233 - 13,650,369
singlet/doubletsinglet
Overlap geneEG666859
Upstream geneStx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475, Fuca2, Pex3, Deadc1, Aig1
Downstream geneHivep2, Gpr126, LOC100039571, LOC100039409, Vta1, D230044M03Rik, EG666904, Nmbr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086B08.g
ACCDH899578
length1,130
definitionDH899578|Mus musculus domesticus DNA, BAC clone: B6Ng01-086B08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacatttcacacttgctacacaagtccctgtgcccatcaaaatag
ctgtgcagaagtcacattgaggctctaatttgtgtttttctaaggattgg
tgaagttaggtaacttctctcatctttttcatccctctacttctctgtaa
ggtctgttacaatgtgtccaagttaaaaaacattaaagtcttccttattg
ttgagttttgaacattcattacatattatgcagagaaggttttcgttgtt
taaagagagctacttttgtttatgtttactgggatactgtctcatgtagt
ccaagctggcttctaacacattatgtagctaaagtgggtctgtctcacaa
gtgctgggattacaagatggctgactgctacatcgaatgtgtgactcaca
aaagctttcttttgttgtttgggttttctttttcagaaaacttcggcttt
tattaattttaatgtagtgattttcccctatggataaagcttttagtgtc
atctaatacatctctaattcattatattttctttatgagtttgaaataca
tgcatctcagtttttgcatttagctctgggaacggttatttgtaaagcaa
ggtagatacataaaagagatccaagctccttttcttttatggaatgttaa
cattgttccagcaatattcctgaaaactgagaagaccatcttctgtctgc
tatgcataatttgccccagtgacttttttctttatagtctaatctgaatt
ctgctcagcgatctgtctcttttgatgaccaccctgaaagttttggacgt
gatcttgagatttagaagtgctcctctgttagctttgattcttttcaaag
ctcttgtcgaccgtgtaaatcttttacattgctggatgtagcttagaacc
catttgttacgttccacctctgggcctgggcccttccagctgaggttttc
tcccctcaagaacacttgcagatccaagttcattctgcctgcatcagagt
gccccaggtttcactgccacaagcactcctaattgctgcgactcagagat
aaatgcactttgccagcttgtggttatctgtgcatatactgagtctgacc
tgaacgatgttcagaaagtccagtgaagct
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_13649233_13650369
seq2: B6Ng01-086B08.g_69_1198 (reverse)

seq1  AGCTTCACTGGGACTTTCTGAACATCTGTCTAGGTCAGACCTCAGTATAA  50
      ||||||||| |||||||||||||||| ||  |||||||| |||||||| |
seq2  AGCTTCACT-GGACTTTCTGAACATC-GTTCAGGTCAGA-CTCAGTAT-A  46

seq1  TGCCACAGATAAACCACAAAGCTGGCAAGTTGCATTTTATCTCTGATGTC  100
      || ||||||| |||||| ||||||||||  |||| ||||||||||| |||
seq2  TG-CACAGAT-AACCAC-AAGCTGGCAAAGTGCA-TTTATCTCTGA-GTC  91

seq1  GCAGCAATTAGGAGTGCTTGTGGCAGTG-AACCTGGGGCACTCTGATGCA  149
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCAGCAATTAGGAGTGCTTGTGGCAGTGAAACCTGGGGCACTCTGATGCA  141

seq1  GGCAGAATGAACTTGGATCTGCAAGTGTTCTTGAGGTGGAGAAAACCTCA  199
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGCAGAATGAACTTGGATCTGCAAGTGTTCTTGAGG-GGAGAAAACCTCA  190

seq1  GCTGG-AGGGCCCAGGCCCAGAGGTGGAACGTAACAAATGGGTTCTAAGC  248
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAGGGCCCAGGCCCAGAGGTGGAACGTAACAAATGGGTTCTAAGC  240

seq1  TACATCCAGCAATGTAAAAGATTTACACGGTCGACAAGAGCTTTGAAAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCAGCAATGTAAAAGATTTACACGGTCGACAAGAGCTTTGAAAAG  290

seq1  AATC-AAGCTAACAGAGGAGCACTTCTAAATCTCAAGATCACGTCCAAAA  347
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAGCTAACAGAGGAGCACTTCTAAATCTCAAGATCACGTCCAAAA  340

seq1  CTTTCAGGGTGGTCATCAAAAGAGACAGATCGCTGAGCAGAATTCAGATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGGGTGGTCATCAAAAGAGACAGATCGCTGAGCAGAATTCAGATT  390

seq1  AGACTATAAAGAAAAAAGTCACTGGGGCAAATTATGCATAGCAGACAGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATAAAGAAAAAAGTCACTGGGGCAAATTATGCATAGCAGACAGAA  440

seq1  GATGGTCTTCTCAGTTTTCAGGAATATTGCTGGAACAATGTTAACATTCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTCTTCTCAGTTTTCAGGAATATTGCTGGAACAATGTTAACATTCC  490

seq1  ATAAAAGAAAAGGAGCTTGGATCTCTTTTATGTATCTACCTTGCTTTACA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAAAAGGAGCTTGGATCTCTTTTATGTATCTACCTTGCTTTACA  540

seq1  AATAACCGTTCCCAGAGCTAAATGCAAAAACTGAGATGCATGTATTTCAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCGTTCCCAGAGCTAAATGCAAAAACTGAGATGCATGTATTTCAA  590

seq1  ACTCATAAAGAAAATATAATGAATTAGAGATGTATTAGATGACACTAAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATAAAGAAAATATAATGAATTAGAGATGTATTAGATGACACTAAAA  640

seq1  GCTTTATCCATAGGGGAAAATCACTACATTAAAATTAATAAAAGCCGAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATCCATAGGGGAAAATCACTACATTAAAATTAATAAAAGCCGAAG  690

seq1  TTTTCTGAAAAAGAAAACCCAAACAACAAAAGAAAGCTTTTGTGAGTCAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGAAAAAGAAAACCCAAACAACAAAAGAAAGCTTTTGTGAGTCAC  740

seq1  ACATTCGATGTAGCAGTCAGCCATCTTGTAATCCCAGCACTTGTGAGACA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCGATGTAGCAGTCAGCCATCTTGTAATCCCAGCACTTGTGAGACA  790

seq1  GACCCACTTTAGCTACATAATGTGTTAGAAGCCAGCTTGGACTACATGAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACTTTAGCTACATAATGTGTTAGAAGCCAGCTTGGACTACATGAG  840

seq1  ACAGTATCCCAGTAAACATAAACAAAAGTAGCTCTCTTTAAACAACGAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATCCCAGTAAACATAAACAAAAGTAGCTCTCTTTAAACAACGAAA  890

seq1  ACCTTCTCTGCATAATATGTAATGAATGTTCAAAACTCAACAATAAGGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTCTGCATAATATGTAATGAATGTTCAAAACTCAACAATAAGGAA  940

seq1  GACTTTAATGTTTTTTAACTTGGACACATTGTAACAGACCTTACAGAGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTAATGTTTTTTAACTTGGACACATTGTAACAGACCTTACAGAGAA  990

seq1  GTAGAGGGATGAAAAAGATGAGAGAAGTTACCTAACTTCACCAATCCTTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGGATGAAAAAGATGAGAGAAGTTACCTAACTTCACCAATCCTTA  1040

seq1  GAAAAACACAAATTAGAGCCTCAATGTGACTTCTGCACAGCTATTTTGAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACACAAATTAGAGCCTCAATGTGACTTCTGCACAGCTATTTTGAT  1090

seq1  GGGCACAGGGACTTGTGTAGCAAGTGTGAAATGTGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACAGGGACTTGTGTAGCAAGTGTGAAATGTGAATTC  1130