BAC Information

Click to search

BAC

Clone NameB6Ng01-086B15
Chromosome10 (Build37)
Map Location 21,121,634 - 21,231,348
singlet/doubletdoublet
Overlap geneLOC100039906
Upstream genePde7b, LOC667202, Ahi1, Myb, LOC100039870, Hbs1l, Aldh8a1
Downstream gene1700020N01Rik, EG432436, LOC100039936, LOC628133, Sgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086B15.bB6Ng01-086B15.g
ACCDH899591DH899592
length658335
definitionDH899591|Mus musculus domesticus DNA, BAC clone: B6Ng01-086B15, 5' end.DH899592|Mus musculus domesticus DNA, BAC clone: B6Ng01-086B15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,230,623 - 21,231,348)(21,121,634 - 21,121,968)
sequence
gaattctagaagaaagtgtcctcagataagcttatcttgagtccttcagt
ggcctctctgtgtggctcagatttgcggactgatcttagaggagcattca
tttctccactggccgattttttttcaccttgctcactttttagaagaaaa
tttaattttgcagataagatgctgtaattcagtcgaatctaagaggtaac
tgcatatggccagaaggtgccaaaagcagtttctcctggctcctatcctg
ctgaccctttaatgaatgttatactgcctgctatcaggagcagctcagta
acaaattccataattggagttaaattgctttagctttgctacaattactt
gttttgttggggaaggagtagtcaagttgggaggtttattggcttctcac
aaccttttaaaccttcaggtactgttgatgaacttttgctaggtataagg
tagaagttaaagaaaaatgtacttttttcaaaagccagatactggcactc
aaattaccaccaatttgtgtgtgtgtgtgtgtttgtgtatgtttgtgtat
gtgtctatgcatgtgtgtatgtgcatgtatgtgtgtttgtgtgtatgcat
gtgtgtatgtgtatgtatggatgtatgtgtgtgtctgtgtgaatatttgt
gtgtatgt
cttccataaaatgaagtcttctagtaagatgatctggtcacagagaaagg
agataagagcctgggccagcaagtttgttattctctagtcccaaaaggat
gcagtggtgacttgttgtgcatgatctacaggaatgtaaacttggttttc
actgtatttgtttgggggcagggagggaaagctttcgttgtgtcttctta
atatcttcagctgagcctggcaaatgaaacctagtgaggatagattaaga
acaaaaggcattttgaaatttaattttatatgcatggggattctacaaaa
agatagagagaagggaataggtgggggaggaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_21230623_21231348
seq2: B6Ng01-086B15.b_45_702 (reverse)

seq1  ACATACACACAAATGCACACACACATGCATACACACATACACTCACACAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACACACATATACACTCACACATACACACATGTATGCACACATACACACAC  100
                        |||||||||||  ||| |||||| ||||||||
seq2  ------------------ACATACACACAAATATTCACACAGACACACAC  32

seq1  ATACATCCATACATACACATACACACATGCATACACACAAACACACATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCCATACATACACATACACACATGCATACACACAAACACACATAC  82

seq1  ATGCACATACACACATGCATAGACACATACACAAACATACACAAACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACATACACACATGCATAGACACATACACAAACATACACAAACACAC  132

seq1  ACACACACACAAATTGGTGGTAATTTGAGTGCCAGTATCTGGCTTTTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACAAATTGGTGGTAATTTGAGTGCCAGTATCTGGCTTTTGAA  182

seq1  AAAAGTACATTTTTCTTTAACTTCTACCTTATACCTAGCAAAAGTTCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTACATTTTTCTTTAACTTCTACCTTATACCTAGCAAAAGTTCATC  232

seq1  AACAGTACCTGAAGGTTTAAAAGGTTGTGAGAAGCCAATAAACCTCCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTACCTGAAGGTTTAAAAGGTTGTGAGAAGCCAATAAACCTCCCAA  282

seq1  CTTGACTACTCCTTCCCCAACAAAACAAGTAATTGTAGCAAAGCTAAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTACTCCTTCCCCAACAAAACAAGTAATTGTAGCAAAGCTAAAGC  332

seq1  AATTTAACTCCAATTATGGAATTTGTTACTGAGCTGCTCCTGATAGCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAACTCCAATTATGGAATTTGTTACTGAGCTGCTCCTGATAGCAGG  382

seq1  CAGTATAACATTCATTAAAGGGTCAGCAGGATAGGAGCCAGGAGAAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATAACATTCATTAAAGGGTCAGCAGGATAGGAGCCAGGAGAAACTG  432

seq1  CTTTTGGCACCTTCTGGCCATATGCAGTTACCTCTTAGATTCGACTGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGCACCTTCTGGCCATATGCAGTTACCTCTTAGATTCGACTGAAT  482

seq1  TACAGCATCTTATCTGCAAAATTAAATTTTCTTCTAAAAAGTGAGCAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCATCTTATCTGCAAAATTAAATTTTCTTCTAAAAAGTGAGCAAGG  532

seq1  TGAAAAAAAATCGGCCAGTGGAGAAATGAATGCTCCTCTAAGATCAGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAAATCGGCCAGTGGAGAAATGAATGCTCCTCTAAGATCAGTCC  582

seq1  GCAAATCTGAGCCACACAGAGAGGCCACTGAAGGACTCAAGATAAGCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATCTGAGCCACACAGAGAGGCCACTGAAGGACTCAAGATAAGCTTA  632

seq1  TCTGAGGACACTTTCTTCTAGAATTC  726
      ||||||||||||||||||||||||||
seq2  TCTGAGGACACTTTCTTCTAGAATTC  658

seq1: chr10_21121634_21121968
seq2: B6Ng01-086B15.g_73_407

seq1  CTTCCATAAAATGAAGTCTTCTAGTAAGATGATCTGGTCACAGAGAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATAAAATGAAGTCTTCTAGTAAGATGATCTGGTCACAGAGAAAGG  50

seq1  AGATAAGAGCCTGGGCCAGCAAGTTTGTTATTCTCTAGTCCCAAAAGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGAGCCTGGGCCAGCAAGTTTGTTATTCTCTAGTCCCAAAAGGAT  100

seq1  GCAGTGGTGACTTGTTGTGCATGATCTACAGGAATGTAAACTTGGTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGTGACTTGTTGTGCATGATCTACAGGAATGTAAACTTGGTTTTC  150

seq1  ACTGTATTTGTTTGGGGGCAGGGAGGGAAAGCTTTCGTTGTGTCTTCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATTTGTTTGGGGGCAGGGAGGGAAAGCTTTCGTTGTGTCTTCTTA  200

seq1  ATATCTTCAGCTGAGCCTGGCAAATGAAACCTAGTGAGGATAGATTAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTCAGCTGAGCCTGGCAAATGAAACCTAGTGAGGATAGATTAAGA  250

seq1  ACAAAAGGCATTTTGAAATTTAATTTTATATGCATGGGGATTCTACAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGGCATTTTGAAATTTAATTTTATATGCATGGGGATTCTACAAAA  300

seq1  AGATAGAGAGAAGGGAATAGGTGGGGGAGGAGGGA  335
      |||||||||||||||||||||||||||||||||||
seq2  AGATAGAGAGAAGGGAATAGGTGGGGGAGGAGGGA  335