BAC Information

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BAC

Clone NameB6Ng01-086D20
Chromosome1 (Build37)10 (Build37)
Map Location 88,468,902 - 88,470,252104,053,911 - 104,054,201
singlet/doubletsingletsinglet
Overlap genePde6d
Upstream geneSp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma
Downstream geneCops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086D20.bB6Ng01-086D20.g
ACCDH899691DH899692
length1,143445
definitionDH899691|Mus musculus domesticus DNA, BAC clone: B6Ng01-086D20, 5' end.DH899692|Mus musculus domesticus DNA, BAC clone: B6Ng01-086D20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(88,468,902 - 88,470,252)(104,053,911 - 104,054,201)
sequence
gaattccttctgtttttacaattatttatatttatgtatatgtgtgagtg
cctacatgtgtgtattcccacttgtgtatctggtaccctcagtgtccaga
agagggtgtctaatcccctgaaactggagttaggtagttgtgagccactt
gatattggtgctaggaaccaagcctgggtcctctagaagagcagcagtgt
tgttaaccactgagccatctcttcagcccccactcatatttcatttgaga
attattcttttctgttgtacttacatcctctatgtttttattttttcctc
atctcttaaattcaggggcagcctgggataagaaaggtaattttaacaac
tagtcacctagaaggggaaagatacttcttgggaagtatttaaattgcaa
atggctatctactttttaatattatatttcattgtatgtatctgcctgga
tgtgtattaaagtattcctacattagcctctggaggtcagaatagtgtgt
cagatcccctggaactagagctacaggcagctgatagttaccatatgggt
gctgggagttgaagcctggtcctctgaagagtagtaagcactcttagcta
ccgagccatctctctagcaccaaataggtatattcttgatttcacttttt
ttgtttccattttaaacatagactgtagtaaagaaaaggctaatcacagg
aatacagttagcgactttgatcatgatcatatagaagagcttgttactca
gagctaataagcacaacattatgggccattaggtttttacagcaaaatta
ctcacagaacgtatccatcttcaaatgagcagcccagactgccttataaa
tgagaaagaagtgagaatgcctcacacaatcccttagaccacagcacaca
taaatgagtgtgtagtggtagtattgagaagactaatgtcagtaggtcca
gttatttccacttccctctggaatcttgtccttaaacatgtgaaaagtat
cagataaaaacttatatgtggaaccaagcagaggtggcacatgcctttta
gttcttcagctctcaaggaggcagagacaaatgggatcctctgaatttaa
gaggactgctccacagaagtggtttccaggacaggtcagggct
aaccggacttgaacaagactaactagaaacaggagtgccccagcctggga
gagtaactggaaggctggtgccaagaggttctgggtctgtcacacctggt
ttcagggttttgtattccgccatgatgtggaagagacacggggggggggg
ggggggatgtggagaaagaggaacactcctccattgttggtgggattgca
ggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattg
gacatagtactaccagaggatccagcaatacctctccttggcatatatgc
agaagatgccccaaccggtaagaaggacacatgctctactatgttcatag
cagccttatttataatagccagaagctggaaagaacccagatgcccctca
acagaggaatgtatacagaaaatgtggtacatctactcaatggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_88468902_88470252
seq2: B6Ng01-086D20.b_41_1183 (reverse)

seq1  AGCCCTGGCTGTCCTGGAATTCTCTACGTAAACCAGGCTGGCCTTGAACT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CACAGAAATCTACCTGCCTCTGCCTCCGAAATCCTGGGATCAAAGGGTTG  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGCCACTTTGCCTCAAGACTCCTCCTCCTCCTCCTCCTCCCTCCTCCTCC  150
                                                        
seq2  --------------------------------------------------  0

seq1  CTCCTCCTCCCCCCTCCTCCCCCTCCCCCTCCTCCTCCTGCTGCTGCTTG  200
                                                        
seq2  --------------------------------------------------  0

seq1  AGGTAGGGTTTGTCTGTATAGCCCTG-GCTGTCCTGGAACTCAC-TCTGT  248
                         |||||||  |||||||||||  ||| |||||
seq2  -------------------AGCCCTGACCTGTCCTGGAAACCACTTCTGT  31

seq1  GGAGCAGTCCTCTT-AATTCAGA-GAT-CCATTTGTCTCTGCCTCC-TGA  294
      |||||||||||||| |||||||| ||| |||||||||||||||||| |||
seq2  GGAGCAGTCCTCTTAAATTCAGAGGATCCCATTTGTCTCTGCCTCCTTGA  81

seq1  GAGCTGA--GACT-AAAGGCATGTGCCACCTCTGCTTGG-TCCACATAT-  339
      |||||||   ||| ||||||||||||||||||||||||| ||||||||| 
seq2  GAGCTGAAGAACTAAAAGGCATGTGCCACCTCTGCTTGGTTCCACATATA  131

seq1  AGTTTTTATCTGATACTTTTCACATGTTTAAGGACAAGATTCCAGAGGGA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTATCTGATACTTTTCACATGTTTAAGGACAAGATTCCAGAGGGA  181

seq1  AGTGGAAATAACTGGACCTACTGACATTAGTCTTCTCAATACTACCACTA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAATAACTGGACCTACTGACATTAGTCTTCTCAATACTACCACTA  231

seq1  CACACTCATTTATGTGTGCTGTGGTCTAAGGGATTGTGTGAGGCATTCTC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCATTTATGTGTGCTGTGGTCTAAGGGATTGTGTGAGGCATTCTC  281

seq1  ACTTCTTTCTCATTTATAAGGCAGTCTGGGCTGCTCATTTGAAGATGGAT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTTCTCATTTATAAGGCAGTCTGGGCTGCTCATTTGAAGATGGAT  331

seq1  ACGTTCTGTGAGTAATTTTGCTGTAAAAACCTAATGGCCCATAATGTTGT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTCTGTGAGTAATTTTGCTGTAAAAACCTAATGGCCCATAATGTTGT  381

seq1  GCTTATTAGCTCTGAGTAACAAGCTCTTCTATATGATCATGATCAAAGTC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTAGCTCTGAGTAACAAGCTCTTCTATATGATCATGATCAAAGTC  431

seq1  GCTAACTGTATTCCTGTGATTAGCCTTTTCTTTACTACAGTCTATGTTTA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACTGTATTCCTGTGATTAGCCTTTTCTTTACTACAGTCTATGTTTA  481

seq1  AAATGGAAACAAAAAAAGTGAAATCAAGAATATACCTATTTGGTGCTAGA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAAACAAAAAAAGTGAAATCAAGAATATACCTATTTGGTGCTAGA  531

seq1  GAGATGGCTCGGTAGCTAAGAGTGCTTACTACTCTTCAGAGGACCAGGCT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCTCGGTAGCTAAGAGTGCTTACTACTCTTCAGAGGACCAGGCT  581

seq1  TCAACTCCCAGCACCCATATGGTAACTATCAGCTGCCTGTAGCTCTAGTT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCCCAGCACCCATATGGTAACTATCAGCTGCCTGTAGCTCTAGTT  631

seq1  CCAGGGGATCTGACACACTATTCTGACCTCCAGAGGCTAATGTAGGAATA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGATCTGACACACTATTCTGACCTCCAGAGGCTAATGTAGGAATA  681

seq1  CTTTAATACACATCCAGGCAGATACATACAATGAAATATAATATTAAAAA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATACACATCCAGGCAGATACATACAATGAAATATAATATTAAAAA  731

seq1  GTAGATAGCCATTTGCAATTTAAATACTTCCCAAGAAGTATCTTTCCCCT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATAGCCATTTGCAATTTAAATACTTCCCAAGAAGTATCTTTCCCCT  781

seq1  TCTAGGTGACTAGTTGTTAAAATTACCTTTCTTATCCCAGGCTGCCCCTG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTGACTAGTTGTTAAAATTACCTTTCTTATCCCAGGCTGCCCCTG  831

seq1  AATTTAAGAGATGAGGAAAAAATAAAAACATAGAGGATGTAAGTACAACA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAGAGATGAGGAAAAAATAAAAACATAGAGGATGTAAGTACAACA  881

seq1  GAAAAGAATAATTCTCAAATGAAATATGAGTGGGGGCTGAAGAGATGGCT  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAATAATTCTCAAATGAAATATGAGTGGGGGCTGAAGAGATGGCT  931

seq1  CAGTGGTTAACAACACTGCTGCTCTTCTAGAGGACCCAGGCTTGGTTCCT  1189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTTAACAACACTGCTGCTCTTCTAGAGGACCCAGGCTTGGTTCCT  981

seq1  AGCACCAATATCAAGTGGCTCACAACTACCTAACTCCAGTTTCAGGGGAT  1239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCAATATCAAGTGGCTCACAACTACCTAACTCCAGTTTCAGGGGAT  1031

seq1  TAGACACCCTCTTCTGGACACTGAGGGTACCAGATACACAAGTGGGAATA  1289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACCCTCTTCTGGACACTGAGGGTACCAGATACACAAGTGGGAATA  1081

seq1  CACACATGTAGGCACTCACACATATACATAAATATAAATAATTGTAAAAA  1339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGTAGGCACTCACACATATACATAAATATAAATAATTGTAAAAA  1131

seq1  CAGAAGGAATTC  1351
      ||||||||||||
seq2  CAGAAGGAATTC  1143

seq1: chr10_104053911_104054201
seq2: B6Ng01-086D20.g_226_516 (reverse)

seq1  CTCCATTGTGTAAATGTACCACATTTTCTGTATCTATTCCTCTGTTGAGG  50
      |||||||| ||| ||||||||||||||||||||  |||||||||||||||
seq2  CTCCATTGAGTAGATGTACCACATTTTCTGTATACATTCCTCTGTTGAGG  50

seq1  GGCATCTGGGTTCTTTCCAGCTCCTGGCTATTATAAATAAGGCTGCTATG  100
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATG  100

seq1  AATATAGTGGAGCATGTGTCCTTCTTACCGGTTGGGGCATCTTCTGGATA  150
      || ||||| ||||||||||||||||||||||||||||||||||||| |||
seq2  AACATAGTAGAGCATGTGTCCTTCTTACCGGTTGGGGCATCTTCTGCATA  150

seq1  TATGCCCAGAAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATT  200
      |||||| || |||||||||||||||||||| |||||||||||||||||||
seq2  TATGCCAAGGAGAGGTATTGCTGGATCCTCTGGTAGTACTATGTCCAATT  200

seq1  TTCTGACGAACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCTGCAA  250
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  TTCTGAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTACAAGCCTGCAA  250

seq1  TCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCC  291
      |||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCC  291