BAC Information

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BAC

Clone NameB6Ng01-086L11
Chromosome10 (Build37)
Map Location 42,822,004 - 42,970,813
singlet/doubletdoublet
Overlap geneSobp, 9030612E09Rik, Pdss2
Upstream geneFoxo3a, Lace1, LOC666540, Snx3, Nr2e1, c222389, Ostm1, Sec63, Scml4, EG666569, C230040G06
Downstream geneLOC100042155, AK122525, LOC100042179, 1700021F05Rik, Cd24a, EG668190, LOC100041418, 1700027J07Rik, EG668192, Qrsl1, Rtn4ip1, Aim1, LOC546475, Speer5-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086L11.bB6Ng01-086L11.g
ACCDH900039DH900040
length714975
definitionDH900039|Mus musculus domesticus DNA, BAC clone: B6Ng01-086L11, 5' end.DH900040|Mus musculus domesticus DNA, BAC clone: B6Ng01-086L11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,822,004 - 42,822,716)(42,970,161 - 42,970,813)
sequence
gaattctcacatcttttctggacctctgggaggttatgtgggatgggaat
ggtttgctaaggccctggaaaccctactcctagacacagattggtaaggt
ggatgcaaagaatgagagagaggggggcggagggagagagagagagagag
agagagagagagagagattgtagatataaagcatacaacaaagccccaaa
tggttcatatatggtattcatatatggtattcatatatggtgcacagtat
tattttatagttgaaaaagtgtttttgagctactttctactttttttctg
gataacacctgatagacactggggcatccgacgcctccttccttattgct
gcttctccccaaagggtcataaaccaattctttgcagtgtatcaaataca
gtgctttcaaagagagaaagaaatgaacatatctaccagagtgttgagtg
actatggacaaagattctacttcagattccacgagtctgggtttcctagg
gatgggagaatacagactctctgtgggtgatactaggagcgaatagccag
gccagtgtgttatccgaacgccatacaaagcccctcactcacacgatata
agccagttttcctatgacaccgtcgctgaatgacttgagactgaagtggc
tgctctgctcactcaggcctggagggccagtgagttcatctgcaaaggtt
ttgtgtaaggcccc
gaattccagccatgatatcaacagccatttgctataggagcagagcttcg
cagggctcttcattcttctgtagaactggaacgagggcctgagacccaca
gctacaaagctgagtactgtctcctgagcagcatgagactgcaggagatc
tagtcctattatgcctccactgtgtgcacctttataataccagtgcaatg
cagttaacctacatttgttgtagctttatttctgttgctctgttaaaaca
ttctgaacaaaagcaattgaagggaagagagagttttgctggcttacaat
tgcaggctatagcccatcacttaggagaaatcaaggcaggatcaattggc
ccatcagaaaacacccccaatctaaagcagagagaagctgggcagggtag
cacatacttttaatcccagcacttgggagccagaggcaaatgaatctttg
tgagttcagggtcaactgatctatagagtaaatcagtaagacccaatctc
aaaaagaattttataaaaaaagtttaaaaaaaaaaaacaattaaaagagc
aaagaggaataaatgttcccatggagccgctagtttgctcctctttccat
cttttcctgccttatccagcagaggacccctcagtctagggaacagtgct
gtctacaacaggctaggtctccctacaccacctactgtcaaccccccaca
gacacacctagagaccaagttcataatttctcaaccaacactttctttgc
aggtgattccaatttgtttcaagcttaattaaaactagctaccagagtgc
tttccttggactttgcttagggccagttctagtcctaatggttttgtaca
catatacatatagagtacatgtctggggaggcacatgtgagtaggtaggt
gtggatgccggtaagggttacaggttgttattaggagtctttgcaatcat
ttttaaccttagtttttaagatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_42822004_42822716
seq2: B6Ng01-086L11.b_44_756

seq1  GAATTCTCACATCTTTTCTGGACCTCTGGGAGGTTATGTGGGATGGGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACATCTTTTCTGGACCTCTGGGAGGTTATGTGGGATGGGAAT  50

seq1  GGTTTGCTAAGGCCCTGGAAACCCTACTCCTAGACACAGATTGGTAAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGCTAAGGCCCTGGAAACCCTACTCCTAGACACAGATTGGTAAGGT  100

seq1  GGATGCAAAGAATGAGAGAGAGGGGGGCGGAGGGAGAGAGAGAGAGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCAAAGAATGAGAGAGAGGGGGGCGGAGGGAGAGAGAGAGAGAGAG  150

seq1  AGAGAGAGAGAGAGAGATTGTAGATATAAAGCATACAACAAAGCCCCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGATTGTAGATATAAAGCATACAACAAAGCCCCAAA  200

seq1  TGGTTCATATATGGTATTCATATATGGTATTCATATATGGTGCACAGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCATATATGGTATTCATATATGGTATTCATATATGGTGCACAGTAT  250

seq1  TATTTTATAGTTGAAAAAGTGTTTTTGAGCTACTTTCTACTTTTTTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATAGTTGAAAAAGTGTTTTTGAGCTACTTTCTACTTTTTTTCTG  300

seq1  GATAACACCTGATAGACACTGGGGCATCCGACGCCTCCTTCCTTATTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACACCTGATAGACACTGGGGCATCCGACGCCTCCTTCCTTATTGCT  350

seq1  GCTTCTCCCCAAAGGGTCATAAACCAATTCTTTGCAGTGTATCAAATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCCCCAAAGGGTCATAAACCAATTCTTTGCAGTGTATCAAATACA  400

seq1  GTGCTTTCAAAGAGAGAAAGAAATGAACATATCTACCAGAGTGTTGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTCAAAGAGAGAAAGAAATGAACATATCTACCAGAGTGTTGAGTG  450

seq1  ACTATGGACAAAGATTCTACTTCAGATTCCACGAGTCTGGGTTTCCTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGGACAAAGATTCTACTTCAGATTCCACGAGTCTGGGTTTCCTAGG  500

seq1  GATGGGAGAATACAGACTCTCTGTGGGTGATACTAGGAGCGAATAGCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGAGAATACAGACTCTCTGTGGGTGATACTAGGAGCGAATAGCCAG  550

seq1  GCCAGTGTGTTATCCGAACGCCATACAAAGCCCCTCACTCACACGATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGTGTTATCCGAACGCCATACAAAGCCCCTCACTCACACGATATA  600

seq1  AGCCAGTTTTCCTATGACAGCGTCGCTGAATGACTTGAGACTGAGGTGGC  650
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  AGCCAGTTTTCCTATGACACCGTCGCTGAATGACTTGAGACTGAAGTGGC  650

seq1  TGCTCTGCTCACCCAGGCCTGGAGGGCCAGTGAGTTCATCTGCAAAGGCT  700
      |||||||||||| ||||||||||||||||||||||||||||||||||| |
seq2  TGCTCTGCTCACTCAGGCCTGGAGGGCCAGTGAGTTCATCTGCAAAGGTT  700

seq1  TTGTGTAAGGCCC  713
      |||||||||||||
seq2  TTGTGTAAGGCCC  713

seq1: chr10_42970161_42970813
seq2: B6Ng01-086L11.g_67_719 (reverse)

seq1  GACAGCACTGTTCCCTAGACTGAGGGGTCCTCTGCTGGATAAGGCAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCACTGTTCCCTAGACTGAGGGGTCCTCTGCTGGATAAGGCAGGAA  50

seq1  AAGATGGAAAGAGGAGCAAACTAGCGGCTCCATGGGAACATTTATTCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGAAAGAGGAGCAAACTAGCGGCTCCATGGGAACATTTATTCCTC  100

seq1  TTTGCTCTTTTAATTGTTTTTTTTTTTTAAACTTTTTTTATAAAATTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCTTTTAATTGTTTTTTTTTTTTAAACTTTTTTTATAAAATTCTT  150

seq1  TTTGAGATTGGGTCTTACTGATTTACTCTATAGATCAGTTGACCCTGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGATTGGGTCTTACTGATTTACTCTATAGATCAGTTGACCCTGAAC  200

seq1  TCACAAAGATTCATTTGCCTCTGGCTCCCAAGTGCTGGGATTAAAAGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAGATTCATTTGCCTCTGGCTCCCAAGTGCTGGGATTAAAAGTAT  250

seq1  GTGCTACCCTGCCCAGCTTCTCTCTGCTTTAGATTGGGGGTGTTTTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTACCCTGCCCAGCTTCTCTCTGCTTTAGATTGGGGGTGTTTTCTGA  300

seq1  TGGGCCAATTGATCCTGCCTTGATTTCTCCTAAGTGATGGGCTATAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCAATTGATCCTGCCTTGATTTCTCCTAAGTGATGGGCTATAGCCT  350

seq1  GCAATTGTAAGCCAGCAAAACTCTCTCTTCCCTTCAATTGCTTTTGTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTGTAAGCCAGCAAAACTCTCTCTTCCCTTCAATTGCTTTTGTTCA  400

seq1  GAATGTTTTAACAGAGCAACAGAAATAAAGCTACAACAAATGTAGGTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTTTAACAGAGCAACAGAAATAAAGCTACAACAAATGTAGGTTAA  450

seq1  CTGCATTGCACTGGTATTATAAAGGTGCACACAGTGGAGGCATAATAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTGCACTGGTATTATAAAGGTGCACACAGTGGAGGCATAATAGGA  500

seq1  CTAGATCTCCTGCAGTCTCATGCTGCTCAGGAGACAGTACTCAGCTTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATCTCCTGCAGTCTCATGCTGCTCAGGAGACAGTACTCAGCTTTGT  550

seq1  AGCTGTGGGTCTCAGGCCCTCGTTCCAGTTCTACAGAAGAATGAAGAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGGGTCTCAGGCCCTCGTTCCAGTTCTACAGAAGAATGAAGAGCC  600

seq1  CTGCGAAGCTCTGCTCCTATAGCAAATGGCTGTTGATATCATGGCTGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGAAGCTCTGCTCCTATAGCAAATGGCTGTTGATATCATGGCTGGAA  650

seq1  TTC  653
      |||
seq2  TTC  653