BAC Information

Click to search

BAC

Clone NameB6Ng01-086N19
Chromosome10 (Build37)
Map Location 71,662,284 - 71,802,099
singlet/doubletdoublet
Overlap geneLOC100040505
Upstream geneTfam, Ube2d1, LOC665472, Zcd1, Ipmk, LOC100039860, LOC216081, EG216082, LOC622812, EG327767, 1700049L16Rik
Downstream geneZwint, LOC432471, LOC544705
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086N19.bB6Ng01-086N19.g
ACCDH900148DH900149
length1,1421,175
definitionDH900148|Mus musculus domesticus DNA, BAC clone: B6Ng01-086N19, 5' end.DH900149|Mus musculus domesticus DNA, BAC clone: B6Ng01-086N19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,662,284 - 71,663,427)(71,800,926 - 71,802,099)
sequence
gaattcatagatgtttaatttgaagtagctagaaacatgaaattaacagg
ttattctagaagtttctgttataattttttgttaaacaaaatgaagaaaa
aatgttgcaagtgtcagagagaaaacagacagagatagagatggagggag
gaaagcaagatgagaaaggaagagggggaagaactttctagtgcatttct
cagtgctccataaattactcatgaaggaaataccttgttgttttctgcat
tgctacttattctgttagcttagctatatcctatattatattgataacta
ttgttgaagaaatatataacctgaatataaataagaagtaaagagcatgc
tctggttattttttgtgatattggaatttaattacaatgaagcaaatata
tttaaaccaaatttgaaatctacataaaatttagtgttgggttttcttca
ccatatgcaaacaagtaaaacaaatattctgaaatcaatatttaaagaca
acccccaaccactagaaacattgaaaactttacatttggaattctgggaa
acattcctaaatgaaatatattctacagagctagataatagaaaaaaaaa
cactccatgattctccagaacaaatgcatctatctgtctatccatctatc
tatctatctatcatctatctatctatctatctatctatctatctatctac
ctacctacctatttacctacctataatcccatatgtaattaaaaagcacc
ttttcccaggtttttagtctcttacacataccatttcaaaaatggagagc
cacatatataagtagacgttgaagtcagttgttactcatggtctttgttg
tgaataatgacctgtatatgtatttttccatcttccatgcagtgagagtt
tatacatctacacaatacagattttctcagcatctcatttacattgaata
gtttgagaaccacacagctgtctgcttcatcctgaagcaagtaaacagat
tttctaatggaaagccagtattaaattttttatttcttctccacagttcc
aaggacccagaatgtcaccaatgatcaattagacattaagaacctgctta
ttagaatattcaacatttacatgttttttcgtgaatttagca
gaattcccttctttggaattccattctctgggctcccaagagagcattct
gtgagaccagttgcctcacattcctgagactgtgcctttttgccacgata
gactataagtcccaacaaaaataatgacctaaaataatctcaacctttct
gaggttgcttctagtcagctactcaatcccattagcagtagagataatca
atacaacagttattctgtgaaattttcctttgttaaacttgatatgccct
acatataaagaccttgtggcacatgtatagaaatagaactgctcaattaa
aaataataggacccgatgaagatcacagcaaacatttaaaatgttaaata
aagctgatgcagtctttacttttttttagtgtgcctctcttttttattga
aaattaacccaacaaacaaagaggtagaagatggatgtcactagaattat
ggtcttttttgagaacttccatcctggaatgtcatagaggatggctggcc
agaggcttgagcggaaagactggataggatgtactgacaatgcagaggca
ggcagctaaatcaaagcccacaggaaagaggcgcccaccccaagcagaaa
atttactgtgagaatttgtcaatggatgaagctagcctagctggctggct
gagaaatgatagttcgtgtgcttactgttacatttaattggagggttttt
atgcttcctatcactgaaggacaggttcaattgatttttttcattgattt
gaatagctgtacacaatttccttaaattgaatggtaattcaacctgtgcc
cacatcacagtaaaataacagatcagtccagagcaatccagagacgagcg
atcaagcatactgagctcacataaactcactaagctaatttttctccttc
taacctgtccttcctatgtcagacacagtttgtgcttagcaatagttctg
ccaaattcccaagattatacgcagaatcagaacacgtgactgggccatgg
gtttgagcctctactcttgcctctgggagaagctgacgtttttcatttct
ttccttctatgacaagcaggaagttgacatataaacaagagaaagtgcac
ttctggagccatgctcaaagcttaggtaagctttccacttttcctaacat
ctaatatttcgttcatattatatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_71662284_71663427
seq2: B6Ng01-086N19.b_49_1190

seq1  GAATTCATAGATGTTTAATTTGAAGTAGCTAGAAACATGAAATTAACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGATGTTTAATTTGAAGTAGCTAGAAACATGAAATTAACAGG  50

seq1  TTATTCTAGAAGTTTCTGTTATAATTTTTTGTTAAACAAAATGAAGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTAGAAGTTTCTGTTATAATTTTTTGTTAAACAAAATGAAGAAAA  100

seq1  AATGTTGCAAGTGTCAGAGAGAAAACAGACAGAGATAGAGATGGAGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGCAAGTGTCAGAGAGAAAACAGACAGAGATAGAGATGGAGGGAG  150

seq1  GAAAGCAAGATGAGAAAGGAAGAGGGGGAAGAACTTTCTAGTGCATTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAAGATGAGAAAGGAAGAGGGGGAAGAACTTTCTAGTGCATTTCT  200

seq1  CAGTGCTCCATAAATTACTCATGAAGGAAATACCTTGTTGTTTTCTGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTCCATAAATTACTCATGAAGGAAATACCTTGTTGTTTTCTGCAT  250

seq1  TGCTACTTATTCTGTTAGCTTAGCTATATCCTATATTATATTGATAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTTATTCTGTTAGCTTAGCTATATCCTATATTATATTGATAACTA  300

seq1  TTGTTGAAGAAATATATAACCTGAATATAAATAAGAAGTAAAGAGCATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAAGAAATATATAACCTGAATATAAATAAGAAGTAAAGAGCATGC  350

seq1  TCTGGTTATTTTTTGTGATATTGGAATTTAATTACAATGAAGCAAATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTATTTTTTGTGATATTGGAATTTAATTACAATGAAGCAAATATA  400

seq1  TTTAAACCAAATTTGAAATCTACATAAAATTTAGTGTTGGGTTTTCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACCAAATTTGAAATCTACATAAAATTTAGTGTTGGGTTTTCTTCA  450

seq1  CCATATGCAAACAAGTAAAACAAATATTCTGAAATCAATATTTAAAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGCAAACAAGTAAAACAAATATTCTGAAATCAATATTTAAAGACA  500

seq1  ACCCCCAACCACTAGAAACATTGAAAACTTTACATTTGGAATTCTGGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCAACCACTAGAAACATTGAAAACTTTACATTTGGAATTCTGGGAA  550

seq1  ACATTCCTAAATGAAATATATTCTACAGAGCTAGATAATAGAAAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCTAAATGAAATATATTCTACAGAGCTAGATAATAGAAAAAAAAA  600

seq1  CACTCCATGATTCTCCAGAACAAATGCATCTATCTGTCTATCCATCTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCATGATTCTCCAGAACAAATGCATCTATCTGTCTATCCATCTATC  650

seq1  TATCTATCTATCATCTATCTATCTATCTATCTATCTATCTATCTATCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTATCATCTATCTATCTATCTATCTATCTATCTATCTATCTAC  700

seq1  CTACCTACCTATTTACCTACCTATAATCCCATATGTAATTAAAAAGCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTACCTATTTACCTACCTATAATCCCATATGTAATTAAAAAGCACC  750

seq1  TTTTCCCAGGTTTTTAGTCTCTTACACATACCATTTCAAAAATGGAGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCAGGTTTTTAGTCTCTTACACATACCATTTCAAAAATGGAGAGC  800

seq1  CACATATATAAGTAGACGTTGAAGTCAGTTGTTACTCATGGTCTTTGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATATAAGTAGACGTTGAAGTCAGTTGTTACTCATGGTCTTTGTTG  850

seq1  TGAATAATGACCTGTATATGTATTTTTCCATCTTCCATGCAGTGAGAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAATGACCTGTATATGTATTTTTCCATCTTCCATGCAGTGAGAGTT  900

seq1  TATACATCTACACAATACAGATTTTCTCAGCATCTCATTTACATTGAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATCTACACAATACAGATTTTCTCAGCATCTCATTTACATTGAATA  950

seq1  GTTTGAGAACCACACAGCTGTCTGCTTCATCCTGAAGCAAGTAAACAGA-  999
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTTTGAGAACCACACAGCTGTCTGCTTCATCCTGAAGCAAGTAAACAGAT  1000

seq1  TTTCTAATGGAAAGCCAGTATTAAA-TTTCTATT--CTCTCCAACAGTTC  1046
      ||||||||||||||||||||||||| ||| ||||   ||||| |||||||
seq2  TTTCTAATGGAAAGCCAGTATTAAATTTTTTATTTCTTCTCC-ACAGTTC  1049

seq1  CAAGGACACAGAATGTCACCAAATGATCAAAATTAGACAATAAAGAAACC  1096
      ||||||| |||||||||||| |||||||  ||||||||| |||   ||||
seq2  CAAGGACCCAGAATGTCACC-AATGATC--AATTAGACATTAA--GAACC  1094

seq1  TGCTAATTAGAATATTCAAACATTAACATGTTTTTCTGTG-ATTTAGCA  1144
      |||| |||||||||||| |||||| ||||||||||  ||| ||||||||
seq2  TGCTTATTAGAATATTC-AACATTTACATGTTTTTTCGTGAATTTAGCA  1142

seq1: chr10_71800926_71802099
seq2: B6Ng01-086N19.g_68_1242 (reverse)

seq1  CTATATAATATTGAAACGAGATATTAGAAATGTTATGAAAAAGTGGAAAG  50
      |||||||||||   ||||| |||||||  |||||| | ||||||||||||
seq2  CTATATAATAT--GAACGAAATATTAG--ATGTTA-GGAAAAGTGGAAAG  45

seq1  CCTTTACTTAAGGCTTTTGAGCAT-GCT-CAG-AGTGCAC--TCTCTT-T  94
      |  |||| ||||   ||||||||| ||| ||| |||||||  |||||| |
seq2  C--TTACCTAAG--CTTTGAGCATGGCTCCAGAAGTGCACTTTCTCTTGT  91

seq1  GTCTATGTCAAACTCCCTGCTTGTCATAG-AGGGAAGAAATG-AAAACGT  142
       | |||||| |||| |||||||||||||| ||| |||||||| |||||||
seq2  TTATATGTC-AACTTCCTGCTTGTCATAGAAGGAAAGAAATGAAAAACGT  140

seq1  CAGC-TCT-CCAGAGGCAAGAGTAGAGGCTCAAACCCATGG-CCAGTCAC  189
      |||| ||| |||||||||||||||||||||||||||||||| ||||||||
seq2  CAGCTTCTCCCAGAGGCAAGAGTAGAGGCTCAAACCCATGGCCCAGTCAC  190

seq1  GTGTTCTGATTCTGCGTATAATCTTGGGAATTTGGCAGAACTATTGCTAA  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTGATTCTGCGTATAATCTTGGGAATTTGGCAGAACTATTGCTAA  240

seq1  GCACAAACTGTGTCTGACATAGGAAGGACAGGTTAGAAGGAGAAAAATTA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAACTGTGTCTGACATAGGAAGGACAGGTTAGAAGGAGAAAAATTA  290

seq1  GCTTAGTGAGTTTATGTGAGCTCAGTATGCTTGATCGCTCGTCTCTGGAT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTGAGTTTATGTGAGCTCAGTATGCTTGATCGCTCGTCTCTGGAT  340

seq1  TGCTCTGGACTGATCTGTTATTTTACTGTGATGTGGGCACAGGTTGAATT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGGACTGATCTGTTATTTTACTGTGATGTGGGCACAGGTTGAATT  390

seq1  ACCATTCAATTTAAGGAAATTGTGTACAGCTATTCAAATCAATGAAAAAA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCAATTTAAGGAAATTGTGTACAGCTATTCAAATCAATGAAAAAA  440

seq1  ATCAATTGAACCTGTCCTTCAGTGATAGGAAGCATAAAAACCCTCCAATT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTGAACCTGTCCTTCAGTGATAGGAAGCATAAAAACCCTCCAATT  490

seq1  AAATGTAACAGTAAGCACACGAACTATCATTTCTCAGCCAGCCAGCTAGG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAACAGTAAGCACACGAACTATCATTTCTCAGCCAGCCAGCTAGG  540

seq1  CTAGCTTCATCCATTGACAAATTCTCACAGTAAATTTTCTGCTTGGGGTG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTCATCCATTGACAAATTCTCACAGTAAATTTTCTGCTTGGGGTG  590

seq1  GGCGCCTCTTTCCTGTGGGCTTTGATTTAGCTGCCTGCCTCTGCATTGTC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCCTCTTTCCTGTGGGCTTTGATTTAGCTGCCTGCCTCTGCATTGTC  640

seq1  AGTACATCCTATCCAGTCTTTCCGCTCAAGCCTCTGGCCAGCCATCCTCT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATCCTATCCAGTCTTTCCGCTCAAGCCTCTGGCCAGCCATCCTCT  690

seq1  ATGACATTCCAGGATGGAAGTTCTCAAAAAAGACCATAATTCTAGTGACA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATTCCAGGATGGAAGTTCTCAAAAAAGACCATAATTCTAGTGACA  740

seq1  TCCATCTTCTACCTCTTTGTTTGTTGGGTTAATTTTCAATAAAAAAGAGA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTCTACCTCTTTGTTTGTTGGGTTAATTTTCAATAAAAAAGAGA  790

seq1  GGCACACTAAAAAAAAGTAAAGACTGCATCAGCTTTATTTAACATTTTAA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACTAAAAAAAAGTAAAGACTGCATCAGCTTTATTTAACATTTTAA  840

seq1  ATGTTTGCTGTGATCTTCATCGGGTCCTATTATTTTTAATTGAGCAGTTC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGCTGTGATCTTCATCGGGTCCTATTATTTTTAATTGAGCAGTTC  890

seq1  TATTTCTATACATGTGCCACAAGGTCTTTATATGTAGGGCATATCAAGTT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTATACATGTGCCACAAGGTCTTTATATGTAGGGCATATCAAGTT  940

seq1  TAACAAAGGAAAATTTCACAGAATAACTGTTGTATTGATTATCTCTACTG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAGGAAAATTTCACAGAATAACTGTTGTATTGATTATCTCTACTG  990

seq1  CTAATGGGATTGAGTAGCTGACTAGAAGCAACCTCAGAAAGGTTGAGATT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGGGATTGAGTAGCTGACTAGAAGCAACCTCAGAAAGGTTGAGATT  1040

seq1  ATTTTAGGTCATTATTTTTGTTGGGACTTATAGTCTATCGTGGCAAAAAG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGGTCATTATTTTTGTTGGGACTTATAGTCTATCGTGGCAAAAAG  1090

seq1  GCACAGTCTCAGGAATGTGAGGCAACTGGTCTCACAGAATGCTCTCTTGG  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTCTCAGGAATGTGAGGCAACTGGTCTCACAGAATGCTCTCTTGG  1140

seq1  GAGCCCAGAGAATGGAATTCCAAAGAAGGGAATTC  1174
      |||||||||||||||||||||||||||||||||||
seq2  GAGCCCAGAGAATGGAATTCCAAAGAAGGGAATTC  1175