BAC Information

Click to search

BAC

Clone NameB6Ng01-086P02
Chromosome10 (Build37)7 (Build37)
Map Location 104,053,903 - 104,054,363109,924,267 - 109,925,433
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086P02.bB6Ng01-086P02.g
ACCDH900206DH900207
length8841,164
definitionDH900206|Mus musculus domesticus DNA, BAC clone: B6Ng01-086P02, 5' end.DH900207|Mus musculus domesticus DNA, BAC clone: B6Ng01-086P02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,903 - 104,054,363)(109,924,267 - 109,925,433)
sequence
gaattcttacctgaggaataccgaatggcagataagcacctgaaaaaatg
ttcaacatccttaatcatcagacaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaatatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaagaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtaataccaagggatcccacaatacctctcctgggc
atatatccagaagatgccccaaccggtaagaaggacacatgcttcactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcaactattaaaaagaaggaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaactcaatcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccacaaac
ttagaatacccaagatataagatacaatttgctaaaagcatgaaactgaa
gaagaacgaagaccagagtgtggatactttgccacttcctggaattggga
acaaaacacccatggaaggagttacagagacaatgtttggagctgtgatg
aaaggatggaccatttagagactgccatatccggggatccatcccataat
cagcttccaaacgctgacaccattgcacacactagcaagattttgctgaa
aggacccagatatagctctctcttgtgagactat
gaattcccaaaacctccctgaggctaacaaaatctttttattcttatgag
aaacagcagaggtaaagtctattgcttccttgaatgtagcagctgtactt
acaagtacccagatgttcttttgtggctttctctcagagcaggctgagga
gctgaggtcttctgcacagggatacagaacatttatggggagagctatcc
taggctttctgaaacctcttcatcagaaaaccccaggtggagatgatgtg
gaccacagaggatgaggctcccatgggctcattctactttatggtttcct
tcccctcagcctcatcgttagctccttcagtttccatgaagaaacggtct
tacttgcagtggcagagaaccctcctataaaagcacatttgtaaaagtcc
cctccgcatctatgttggaatgcaatgctgagtgtcttgatcttgtgtag
atcccatgcaaggaaacatagagactttgagtccattgccctatgtgacc
tttaaaaagatgtttctgttattattgctctatagacagccaaatagtct
ttattaatttttttcaaaaagcattttaaggatttaacatattccagagt
tttgcattatattgatacagaaaacagaatataggcttttttttcatcaa
gaactagatgtacaaatcagtgctttatcacaaattctttgttttcattg
attatctctaattaagactgtctggaacaagatgagtcttcaatatatgt
actcagtgcataatgataaaattagtatagttagcattttcatgtcctat
atatatttttaattttcatattaagctggaataattgtatgattatgtga
cagaactttaggttcagtgtatgactgcattgtgtgatcatcaaatcatg
ggacaattttctatgagtacattttagacatacattgctaggtcttgcat
ttgacaaagagatctcaaagcttccttagagaactaggaaaggtgctcat
ttcatcacatttctcatctattctttagtgattctactatttacatctat
tcactatgtataggttaatggtattaatttcattttaaagtactatggta
atttattccaattactgaacattttagggtctttatttattatggagaca
ttaatagttttata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053903_104054363
seq2: B6Ng01-086P02.b_47_517 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          |||||||||||| |||||||||||||||||||
seq2  TTTAATAGTTGAGTAGTACTCCATTGTGTAGATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| |||||| ||||||||||||||||||||||
seq2  ATAAATAAGGCTGCTATGAACATAGTGAAGCATGTGTCCTTCTTACCGGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      ||||||||||||||||||||||||||| ||||||||||  ||||||   |
seq2  TGGGGCATCTTCTGGATATATGCCCAGGAGAGGTATTGTGGGATCCCTTG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      ||| |||||||||||||||||||| |||||||||||| ||||||||||||
seq2  GTATTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      |||||||||||| |||||||||||||||||||||||||||||| ||||||
seq2  GGTTGTACAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCTTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATATTAGCCA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      |||||||||||||||| |||||||||||||||||||||||||||||||  
seq2  TTCTGACTGGTGTGAGATGGAATCTCAGGGTTGTTTTGATTTGCATTTGT  400

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTATCTGCCATTCG  450

seq1  GTATTCCTCAGGTGAGAATTC  461
      ||||||||||||| |||||||
seq2  GTATTCCTCAGGTAAGAATTC  471

seq1: chr7_109924267_109925433
seq2: B6Ng01-086P02.g_66_1229 (reverse)

seq1  TATATAACTATTAATGTCT-CATA--TAATAAAGACCCTAAAATATGTTT  47
      |||| |||||||||||||| ||||   |||||||||||||||||    ||
seq2  TATAAAACTATTAATGTCTCCATAATAAATAAAGACCCTAAAAT---GTT  47

seq1  CAGTAATT-GTATAATTTA-CATAGTACCTTTAAAATGAAAATTAATACC  95
      |||||||| | |||| ||| ||||||| |||||||||| |||||||||||
seq2  CAGTAATTGGAATAAATTACCATAGTA-CTTTAAAATG-AAATTAATACC  95

seq1  AATTAACTATACATAGTTGAATAAGATGT-AATAGTAGAATCACTAAAGA  144
      | | | |||||||||| ||||| |||||| ||||||||||||||||||||
seq2  ATTAACCTATACATAG-TGAAT-AGATGTAAATAGTAGAATCACTAAAGA  143

seq1  ATAGATGAGAAAATGTGATTGAAATGAGCA-CTTTCCTAGTTCTCTAAGG  193
      ||||||||| |||||||| ||||||||||| |||||||||||||||||||
seq2  ATAGATGAG-AAATGTGA-TGAAATGAGCACCTTTCCTAGTTCTCTAAGG  191

seq1  AAGCTTTGAGATCTCTTTGTCAAATGCAAGACCTAGCAATGTATTGTCTA  243
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAGCTTTGAGATCTCTTTGTCAAATGCAAGACCTAGCAATGTA-TGTCTA  240

seq1  AAATGTACTCATAGAAAATTGTCCCCTGATTTGATGATCACACAATGCAG  293
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAATGTACTCATAGAAAATTGTCCCATGATTTGATGATCACACAATGCAG  290

seq1  TCATACACTGAACCTAAAGTTCTGTCACATAATCATACAATTATTCCAGC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACACTGAACCTAAAGTTCTGTCACATAATCATACAATTATTCCAGC  340

seq1  TTAATATGAAAATTAAAAATATATATAGGACATGAAAATGCTAACTATAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATGAAAATTAAAAATATATATAGGACATGAAAATGCTAACTATAC  390

seq1  TAATTTTATCATTATGCACTGAGTACATATATTGAAGACTCATCTTGTTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTATCATTATGCACTGAGTACATATATTGAAGACTCATCTTGTTC  440

seq1  CAGACAGTCTTAATTAGAGATAATCAATGAAAACAAAGAATTTGTGATAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGTCTTAATTAGAGATAATCAATGAAAACAAAGAATTTGTGATAA  490

seq1  AGCACTGATTTGTACATCTAGTTCTTGATGAAAAAAAAGCCTATATTCTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGATTTGTACATCTAGTTCTTGATGAAAAAAAAGCCTATATTCTG  540

seq1  TTTTCTGTATCAATATAATGCAAAACTCTGGAATATGTTAAATCCTTAAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTATCAATATAATGCAAAACTCTGGAATATGTTAAATCCTTAAA  590

seq1  ATGCTTTTTGAAAAAAATTAATAAAGACTATTTGGCTGTCTATAGAGCAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTTTGAAAAAAATTAATAAAGACTATTTGGCTGTCTATAGAGCAA  640

seq1  TAATAACAGAAACATCTTTTTAAAGGTCACATAGGGCAATGGACTCAAAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACAGAAACATCTTTTTAAAGGTCACATAGGGCAATGGACTCAAAG  690

seq1  TCTCTATGTTTCCTTGCATGGGATCTACACAAGATCAAGACACTCAGCAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATGTTTCCTTGCATGGGATCTACACAAGATCAAGACACTCAGCAT  740

seq1  TGCATTCCAACATAGATGCGGAGGGGACTTTTACAAATGTGCTTTTATAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCCAACATAGATGCGGAGGGGACTTTTACAAATGTGCTTTTATAG  790

seq1  GAGGGTTCTCTGACACTGCAAGTAAGACCGTTTCTTCATGGAAACTGAAG  843
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTCTCTGCCACTGCAAGTAAGACCGTTTCTTCATGGAAACTGAAG  840

seq1  GAGCTAACGATGAGGCTGAGGGGAAGGAAACCATAAAGTAGAATGAGCCC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAACGATGAGGCTGAGGGGAAGGAAACCATAAAGTAGAATGAGCCC  890

seq1  ATGGGAGCCTCATCCTCTGTGGTCCACATCATCTCCACCTGGGGTTTTCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGCCTCATCCTCTGTGGTCCACATCATCTCCACCTGGGGTTTTCT  940

seq1  GATGAAGAGGTTTCAGAAAGCCTAGGATAGCTCTCCCCATAAATGTTCTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGAGGTTTCAGAAAGCCTAGGATAGCTCTCCCCATAAATGTTCTG  990

seq1  TATCCCTGTGCAGAAGACCTCAGCTCCTCAGCCTGCTCTGAGAGAAAGCC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTGTGCAGAAGACCTCAGCTCCTCAGCCTGCTCTGAGAGAAAGCC  1040

seq1  ACAAAAGAACATCTGGGTACTTGTAAGTACAGCTGCTACATTCAAGGAAG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGAACATCTGGGTACTTGTAAGTACAGCTGCTACATTCAAGGAAG  1090

seq1  CAATAGACTTTACCTCTGCTGTTTCTCATAAGAATAAAAAGATTTTGTTA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGACTTTACCTCTGCTGTTTCTCATAAGAATAAAAAGATTTTGTTA  1140

seq1  GCCTCATGGAGGTTTTCTGAATTC  1167
      |||||| |||||||||  ||||||
seq2  GCCTCAGGGAGGTTTTGGGAATTC  1164