BAC Information

Click to search

BAC

Clone NameB6Ng01-087A22
Chromosome10 (Build37)
Map Location 70,792,120 - 70,906,505
singlet/doubletdoublet
Overlap geneZcd1, Ipmk
Upstream gene1200015N20Rik, LOC665398, Phyhipl, EG665429, Bicc1, LOC622551, C730027H18Rik, Tfam, Ube2d1, LOC665472
Downstream geneLOC100039860, LOC216081, EG216082, LOC622812, EG327767, 1700049L16Rik, LOC100040505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087A22.bB6Ng01-087A22.g
ACCDH900289DH900290
length1,1301,111
definitionDH900289|Mus musculus domesticus DNA, BAC clone: B6Ng01-087A22, 5' end.DH900290|Mus musculus domesticus DNA, BAC clone: B6Ng01-087A22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,905,361 - 70,906,505)(70,792,120 - 70,793,251)
sequence
gaattctccatcatacaaacatctttgacttcttcttatgaaaaatcttg
tttttgtagtaatttccaattggagaaatcagtaaaacatcaccctgtcc
tctcttttgtcaaggtcctgaattttaacacatttatcaaatcatttttg
ccacaaagtatccttgtattccagagacaggaacataagtatctgtaggc
ccttcacctagcctgccataggacccagaagaaacatcaatgtgttcctt
cacaaaaatacctgggaacagacaccatgactgagacaactctcataagg
acaacatttaattggggctggcttacaggttcagaggttcaatccattat
catcaaggcaggagcatggtggtgtccaggcaggcatcatgcaggcagag
ctgagaattctacatcttcatctaaaggctgctagcagaatactggcttc
ctgcagctaggaggagggtcttaaaggccacaccagagtgacacacctac
tctaacaaggccacacccattgcaacaggaccactcctactccaacaaga
ccagtcctactccaacaaggctaaatagtgccactccctggtcaagcata
tacaatccatcacagaaagttaagaataaaagtcaaatttcttccctaag
agtggataagatgatgccaggggtaacagcatttcaggatctttagtgaa
cagtgaggaccttcctgatcattctgtttccatggggaattgtttgtcac
aattgaaaaactaatttccagctggtgagatggctcaggactgctcttcc
agaggtcctgagttcaattcccagcaaccatatggtggctcacagccatc
tgtaatgagatcagatgccctcttctggtgtgtctgaagatagcttcagt
gtactcatataaataaaaataaataaatctttaaaaaagaagaagaaaaa
gaaagaaagaagaaagaaaacttatttcacaattcctttccttcagattt
ctacctctattagtagacaggctgagaatcaccataggaataaactactg
atgaaagtctatttctctttgaaatactcgtcgacccaaagaagctttgc
acaagagacgaacattcacaaaccaaaact
gaattcaagatcttgatgcagaaaaagcccaagttgccagtttccccttc
cagggcagccaccgaatttatgttggtctgaaatttggagacaaaccctg
gcagggccagttggtccaatttgttcatttaaaggctggaaaatgggctg
ggaacatggcttagtggttaaacgcctgctgtgtttgcatgaggactggg
ccctccaaacccctgtaaaagctcggtgcatctggaattacagcatctac
aatgtggccacagccaaatggatgagaccactggcacccgcgtgtgacca
cacgtcccatagaacacacaacattcacatgcttaaaagaaaaggctgag
aagccaagtggctttgcttgaggtcagtgagtgggatagagaagccagca
cactgctcgccagaggctcaggtggtcaaatgaggaagacacttggagcc
tcgggtgctcaggcagaagggcagccattgcatattagttaacacaagcc
ttcaagccttagtaagacaaagactgtacagtggaaaggacggggcccga
tttatcgtcaaagatggtgtctttgctagcttaagccatcactcagtggg
aagtaaaagctccctaggcctctgatgggaacttgtcactctcagcgagg
ctgtgggactctgacatcagtatacttgaccgcgggtgtctaagcatcat
cgacgccatcagtctgatgccctctgctcttgggctggtgctctagatca
ctgcatgtgcataatcatactcacaagctcggcgcatgtgtgtgtacaag
tggaggccccaggttgggaacagtgtcttcctgtatagctctctgctgta
tttattgaggcggggtctcctgttgaacagacttcactaattatggctgg
gtgcagtggtcagcttgctctagtgatccctaccactgcctcctgagcgc
tcggattacaggcagccgccatgcctgctgcttttatgtgggcactcaat
cagagcatcgccccacatcttctgactactacccacatcccgtgctgatt
ctgctagcggttctatagtgatcgttaccgagcaaagatgaaccagaagg
gaagtgctgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_70905361_70906505
seq2: B6Ng01-087A22.b_46_1175 (reverse)

seq1  AGTTTTGTGTTTGTG-ATGGTCGTCTCTTTGTGCAAAGC-TCTTTGGGTC  48
      ||||||| ||||||| ||| ||||||| ||||||||||| ||||||||| 
seq2  AGTTTTG-GTTTGTGAATGTTCGTCTC-TTGTGCAAAGCTTCTTTGGGT-  47

seq1  CGACGAGTATTTC-AAGAG-AATAGACTTTTCATCAAGTAGTTTTATTCC  96
      ||||||||||||| ||||| ||||||| ||||||| ||||| ||||||||
seq2  CGACGAGTATTTCAAAGAGAAATAGAC-TTTCATC-AGTAG-TTTATTCC  94

seq1  TATGGTGATTCTCAGCCTGTCTACTAATTAGAGGTAGAAATCTGGAAGGA  146
      ||||||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  TATGGTGATTCTCAGCCTGTCTACTAA-TAGAGGTAGAAATCT-GAAGGA  142

seq1  AAGGAATTGTGAAAATAAGTTTTTCTTTTCTTTTCTTTTCTTTTCTTTTT  196
      ||||||||||| ||||||| |||||||   | ||||||   |||||||||
seq2  AAGGAATTGTG-AAATAAG-TTTTCTT---TCTTCTTT--CTTTCTTTTT  185

seq1  TCTTTCTTTCTTTTTTTAAAGATTTATTTATTTTTATTTATATGAGTACA  246
         |||||   |||||||||||||||||||||||||||||||||||||||
seq2  --CTTCTT--CTTTTTTAAAGATTTATTTATTTTTATTTATATGAGTACA  231

seq1  CTGAAGCTATCTTCAGACACACCAGAAGAGGGCATCTGATCTCATTACAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCTATCTTCAGACACACCAGAAGAGGGCATCTGATCTCATTACAG  281

seq1  ATGGCTGTGAGCCACCATATGGTTGCTGGGAATTGAACTCAGGACCTCTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGTGAGCCACCATATGGTTGCTGGGAATTGAACTCAGGACCTCTG  331

seq1  GAAGAGCAGTCCTGAGCCATCTCACCAGCTGGAAATTAGTTTTTCAATTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCAGTCCTGAGCCATCTCACCAGCTGGAAATTAGTTTTTCAATTG  381

seq1  TGACAAACAATTCCCCATGGAAACAGAATGATCAGGAAGGTCCTCACTGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAACAATTCCCCATGGAAACAGAATGATCAGGAAGGTCCTCACTGT  431

seq1  TCACTAAAGATCCTGAAATGCTGTTACCCCTGGCATCATCTTATCCACTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAAAGATCCTGAAATGCTGTTACCCCTGGCATCATCTTATCCACTC  481

seq1  TTAGGGAAGAAATTTGACTTTTATTCTTAACTTTCTGTGATGGATTGTAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGAAGAAATTTGACTTTTATTCTTAACTTTCTGTGATGGATTGTAT  531

seq1  ATGCTTGACCAGGGAGTGGCACTATTTAGCCTTGTTGGAGTAGGACTGGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGACCAGGGAGTGGCACTATTTAGCCTTGTTGGAGTAGGACTGGT  581

seq1  CTTGTTGGAGTAGGAGTGGTCCTGTTGCAATGGGTGTGGCCTTGTTAGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGGAGTAGGAGTGGTCCTGTTGCAATGGGTGTGGCCTTGTTAGAG  631

seq1  TAGGTGTGTCACTCTGGTGTGGCCTTTAAGACCCTCCTCCTAGCTGCAGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTGTCACTCTGGTGTGGCCTTTAAGACCCTCCTCCTAGCTGCAGG  681

seq1  AAGCCAGTATTCTGCTAGCAGCCTTTAGATGAAGATGTAGAATTCTCAGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGTATTCTGCTAGCAGCCTTTAGATGAAGATGTAGAATTCTCAGC  731

seq1  TCTGCCTGCATGATGCCTGCCTGGACACCACCATGCTCCTGCCTTGATGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTGCATGATGCCTGCCTGGACACCACCATGCTCCTGCCTTGATGA  781

seq1  TAATGGATTGAACCTCTGAACCTGTAAGCCAGCCCCAATTAAATGTTGTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGATTGAACCTCTGAACCTGTAAGCCAGCCCCAATTAAATGTTGTC  831

seq1  CTTATGAGAGTTGTCTCAGTCATGGTGTCTGTTCCCAGGTATTTTTGTGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGAGAGTTGTCTCAGTCATGGTGTCTGTTCCCAGGTATTTTTGTGA  881

seq1  AGGAACACATTGATGTTTCTTCTGGGTCCTATGGCAGGCTAGGTGAAGGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACACATTGATGTTTCTTCTGGGTCCTATGGCAGGCTAGGTGAAGGG  931

seq1  CCTACAGATACTTATGTTCCTGTCTCTGGAATACAAGGATACTTTGTGGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGATACTTATGTTCCTGTCTCTGGAATACAAGGATACTTTGTGGC  981

seq1  AAAAATGATTTGATAAATGTGTTAAAATTCAGGACCTTGACAAAAGAGAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGATTTGATAAATGTGTTAAAATTCAGGACCTTGACAAAAGAGAG  1031

seq1  GACAGGGTGATGTTTTACTGATTTCTCCAATTGGAAATTACTACAAAAAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGTGATGTTTTACTGATTTCTCCAATTGGAAATTACTACAAAAAC  1081

seq1  AAGATTTTTCATAAGAAGAAGTCAAAGATGTTTGTATGATGGAGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTTCATAAGAAGAAGTCAAAGATGTTTGTATGATGGAGAATTC  1130

seq1: chr10_70792120_70793251
seq2: B6Ng01-087A22.g_68_1178

seq1  GAATTCAAGATCTTGATGCAGAAAAAGCCCAAGTTGCCAGTTTCCCCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGATCTTGATGCAGAAAAAGCCCAAGTTGCCAGTTTCCCCTTC  50

seq1  CAGGGCAGCCACCGAATTTATGTTGGTCTGAAATTTGGAGACAAACCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAGCCACCGAATTTATGTTGGTCTGAAATTTGGAGACAAACCCTG  100

seq1  GCAGGGCCAGTTGGTCCAATTTGTTCATTTAAAGGCTGGAAAATGGGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCCAGTTGGTCCAATTTGTTCATTTAAAGGCTGGAAAATGGGCTG  150

seq1  GGAACATGGCTTAGTGGTTAAACGCCTGCTGTGTTTGCATGAGGACTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATGGCTTAGTGGTTAAACGCCTGCTGTGTTTGCATGAGGACTGGG  200

seq1  CCCTCCAAACCCCTGTAAAAGCTCGGTGCATCTGGAATTACAGCATCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAAACCCCTGTAAAAGCTCGGTGCATCTGGAATTACAGCATCTAC  250

seq1  AATGTGGCCACAGCCAAATGGATGAGACCACTGGCACCCGCGTGTGACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGCCACAGCCAAATGGATGAGACCACTGGCACCCGCGTGTGACCA  300

seq1  CACGTCCCATAGAACACACAACATTCACATGCTTAAAAGAAAAGGCTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTCCCATAGAACACACAACATTCACATGCTTAAAAGAAAAGGCTGAG  350

seq1  AAGCCAAGTGGCTTTGCTTGAGGTCAGTGAGTGGGATAGAGAAGCCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAGTGGCTTTGCTTGAGGTCAGTGAGTGGGATAGAGAAGCCAGCA  400

seq1  CACTGCTCGCCAGAGGCTCAGGTGGTCAAATGAGGAAGACACTTGGAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTCGCCAGAGGCTCAGGTGGTCAAATGAGGAAGACACTTGGAGCC  450

seq1  TCGGGTGCTCAGGCAGAAGGGCAGCCATTGCATATTAGTTAACACAAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGTGCTCAGGCAGAAGGGCAGCCATTGCATATTAGTTAACACAAGCC  500

seq1  TTCAAGCCTTAGTAAGACAAAGACTGTACAGTGGAAAGGACGGGGCCCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCCTTAGTAAGACAAAGACTGTACAGTGGAAAGGACGGGGCCCGA  550

seq1  TTTATCGTCAAAGATGGTGTCTTTGCTAGCTTAAGCCATCACTCAGTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCGTCAAAGATGGTGTCTTTGCTAGCTTAAGCCATCACTCAGTGGG  600

seq1  AAGTAAAAGCTCCCTAGGCCTCTGATGGGAACTTGTCACTCTCAGCGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAAGCTCCCTAGGCCTCTGATGGGAACTTGTCACTCTCAGCGAGG  650

seq1  CTGTGGGACTCTGACATCAGTATACTTGACCGCGGGTGTCTAAGCATCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGACTCTGACATCAGTATACTTGACCGCGGGTGTCTAAGCATCAT  700

seq1  CGACGCCATCAGTCTGATGCCCTCTGCTCTTGGGCTGGTGCTCTAGATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACGCCATCAGTCTGATGCCCTCTGCTCTTGGGCTGGTGCTCTAGATCA  750

seq1  CTGCATGTGCATAATCATACTCACAAGCTCGGCGCATGTGTGTGTACAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGTGCATAATCATACTCACAAGCTCGGCGCATGTGTGTGTACAAG  800

seq1  TGGAGGCCCCAGGTTGGGAACAGTGTCTTCCTGTATAGCTCTCTGCTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCCCCAGGTTGGGAACAGTGTCTTCCTGTATAGCTCTCTGCTGTA  850

seq1  TTTATTGAGGCGGGGTCTCCTGTTGAACAGACTTCACTAATTATGGCT-G  899
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTATTGAGGCGGGGTCTCCTGTTGAACAGACTTCACTAATTATGGCTGG  900

seq1  GTGCAGTGGTCAGCTTGCTCTAGTGATCCCTACCACTGCCTCCTGAGCGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGTGGTCAGCTTGCTCTAGTGATCCCTACCACTGCCTCCTGAGCGC  950

seq1  TCGGATTACAGGCAAGCCGCCATGCCTGCCTGGCTTTTATGTGGGCACTC  999
      ||||||||||||| |||||||||||||||   ||||||||||||||||||
seq2  TCGGATTACAGGC-AGCCGCCATGCCTGC--TGCTTTTATGTGGGCACTC  997

seq1  AATCCAGAGCCATCGCCCCAACATTCTTCCTGACTACCTAACCCACATCC  1049
      ||| ||||| ||||||||| ||| |||| ||||||||   |||||||| |
seq2  AAT-CAGAG-CATCGCCCC-ACA-TCTT-CTGACTAC--TACCCACAT-C  1039

seq1  CCGTGGCCTGGATTTCTGCTAGCGGTGTCTATAGTGGATCCGTTACAGAG  1099
      |||||  |||   ||||||||||||| |||||||| ||| |||||| |||
seq2  CCGTG--CTG--ATTCTGCTAGCGGT-TCTATAGT-GAT-CGTTACCGAG  1082

seq1  CCACAGAGATGAACACAG-AGGGAAGTTGCTGCC  1132
         || |||||||| ||| ||||||| |||||||
seq2  ---CAAAGATGAAC-CAGAAGGGAAG-TGCTGCC  1111