BAC Information

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BAC

Clone NameB6Ng01-087C02
Chromosome10 (Build37)
Map Location 14,108,286 - 14,237,189
singlet/doubletdoublet
Overlap geneGpr126
Upstream geneLOC100039475, Fuca2, Pex3, Deadc1, Aig1, EG666859, Hivep2
Downstream geneLOC100039571, LOC100039409, Vta1, D230044M03Rik, EG666904, Nmbr, LOC666917, LOC637043
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087C02.bB6Ng01-087C02.g
ACCDH900343DH900344
length1,0921,154
definitionDH900343|Mus musculus domesticus DNA, BAC clone: B6Ng01-087C02, 5' end.DH900344|Mus musculus domesticus DNA, BAC clone: B6Ng01-087C02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,108,286 - 14,109,382)(14,236,015 - 14,237,189)
sequence
gaattctgtaaggtgaagcatggctttatgtaagtacatggcttttcttt
gccgtttctcagtacgccactcttgtagaacctgcatgtgctagagagcc
tacaagtacctacaccccttctttggagaatttttatgtaggttccatta
tataggcatgatgaattaactaggcattgacccctgaattaatctccagc
ccctttcccttctcagaaattgagggtatggacagagccgaagatgccaa
acctctgatgccatggttgggtcatctggcaaccaaccattctatggcct
gaagctacctagaggcattgagcctccagtcagctcattaccataggaga
agagactccaatccccactgcagagatcccagagtctttgaagctcttgt
gccaggaaatgaagactaatgccaaatgttataacaaaaggtgctcccag
actactgttatccaggacagtgtgcaatgattttataattagtttagaaa
tgattaccaggaactagaagcaaagactaaacacacacacacacacacac
acacaaacacacaaacacacacacaagcatagtgctaatttgttcatcta
tttttcccaaaaaagtctcatatagagctagaatagaacaatcaaagcca
aaggtactttggtggcaaggacatgtaattccagctacttgggagactga
agaaatgggactgcaattctgaggacagcctggcctatatggtggatttg
aaaccattctgaataacttaagagaaccttatttctaaatcaatactaaa
tggagatcatttaattggaggtggtagtgagtgcttacctagcctctacc
aagcccctggtctcaatttccaacatcatcaaaaacattttaaatttatt
atatattttattatttaaaacaaaatttaaatttaaatatgtctttggat
tatattcttcccctcgcccaagtttttccatatcatccccctctatccac
ccaactttcaattctttctcaactaaaatacaataaacatcccccacagc
aaacaaataaacagcaccaaaaaaaaaaagaaagaaaagaaa
gaattctgttactcaatccagtgagaacacaaatttttaaacatttaagg
ggaattgcattaagttttctgtaactgtgtcttccacaaccttgcttggt
agcacatgcaatcttatttatatttttctcccttgtttctctggaggatt
aaatatccatgaacagaaaagttcattatttctgtataaagtaagtttta
aaaactagttacttactcctcgctgtcccttctgtttcttcctttgactt
ttgtttatttgtttgtttggtttttttttgtttgtttgttttgttttgtt
ttttgagacagggtttctctgtagccctggctgtcctggaactcactttg
taaatcaggctgacctcaaactcagaaatccacctgcctctgcctcccaa
gtgctgggattaaaggcgtgcgccaccatgcccagcttttcctttgactt
ttaagggagtagttgagtttaaacacctcattgtaataatcactaattta
aactaattaataagcaatggcaaaataactataattgtagggtataaaca
cacaggttagtaatagataaatattaggtgtgccttgttaaatttcttca
aaggaaaaagttgaattttaaggctgaatcaaacgctatccatgtgtttt
gcagtgtgccgaagtagtttttatttcaccaactgctcagcagattatta
tgaacactctcacaccacaaaaaggggggagttaatttattctttttctt
tttttctaataaatgaggagagattgactttaggaacagttgattgacag
ccatgtagagtaaaaccagaatgcagttcttctgtcctccggtacactct
cctcatgcgtccattctctttagacacaaattcccaaagaacctgacact
atcaaggcaggctgaccataccacccagtctcacacgattagtcttgact
tcacgtggctgaccagatgagagtgtgatttttaaacttcactttgacag
cgattgttcccacagatttcttccatcatactccactcacgagtattgcc
aaggaatgtttctgtagcatgttcccttcccccactttgagtggtgtgtt
gtgacaggtggaatggaatatatcatttaccactgacatctccccagcta
tata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_14108286_14109382
seq2: B6Ng01-087C02.b_46_1137

seq1  GAATTCTGTAAGGTGAAGCATGGCTTTATGTAAGTACATGGCTTTTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAAGGTGAAGCATGGCTTTATGTAAGTACATGGCTTTTCTTT  50

seq1  GCCGTTTCTCAGTACGCCACTCTTGTAGAACCTGCATGTGCTAGAGAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTTTCTCAGTACGCCACTCTTGTAGAACCTGCATGTGCTAGAGAGCC  100

seq1  TACAAGTACCTACACCCCTTCTTTGGAGAATTTTTATGTAGGTTCCATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTACCTACACCCCTTCTTTGGAGAATTTTTATGTAGGTTCCATTA  150

seq1  TATAGGCATGATGAATTAACTAGGCATTGACCCCTGAATTAATCTCCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGCATGATGAATTAACTAGGCATTGACCCCTGAATTAATCTCCAGC  200

seq1  CCCTTTCCCTTCTCAGAAATTGAGGGTATGGACAGAGCCGAAGATGCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCCCTTCTCAGAAATTGAGGGTATGGACAGAGCCGAAGATGCCAA  250

seq1  ACCTCTGATGCCATGGTTGGGTCATCTGGCAACCAACCATTCTATGGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGATGCCATGGTTGGGTCATCTGGCAACCAACCATTCTATGGCCT  300

seq1  GAAGCTACCTAGAGGCATTGAGCCTCCAGTCAGCTCATTACCATAGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTACCTAGAGGCATTGAGCCTCCAGTCAGCTCATTACCATAGGAGA  350

seq1  AGAGACTCCAATCCCCACTGCAGAGATCCCAGAGTCTTTGAAGCTCTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTCCAATCCCCACTGCAGAGATCCCAGAGTCTTTGAAGCTCTTGT  400

seq1  GCCAGGAAATGAAGACTAATGCCAAATGTTATAACAAAAGGTGCTCCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAAATGAAGACTAATGCCAAATGTTATAACAAAAGGTGCTCCCAG  450

seq1  ACTACTGTTATCCAGGACAGTGTGCAATGATTTTATAATTAGTTTAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGTTATCCAGGACAGTGTGCAATGATTTTATAATTAGTTTAGAAA  500

seq1  TGATTACCAGGAACTAGAAGCAAAGACTAAACACACACACACACACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACCAGGAACTAGAAGCAAAGACTAAACACACACACACACACACAC  550

seq1  ACACAAACACACAAACACACACACAAGCATAGTGCTAATTTGTTCATCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAACACACAAACACACACACAAGCATAGTGCTAATTTGTTCATCTA  600

seq1  TTTTTCCCAAAAAAGTCTCATATAGAGCTAGAATAGAACAATCAAAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCAAAAAAGTCTCATATAGAGCTAGAATAGAACAATCAAAGCCA  650

seq1  AAGGTACTTTGGTGGCAAGGACATGTAATTCCAGCTACTTGGGAGACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTACTTTGGTGGCAAGGACATGTAATTCCAGCTACTTGGGAGACTGA  700

seq1  AGAAATGGGACTGCAATTCTGAGGACAGCCTGGCCTATATGGTGGATTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGGGACTGCAATTCTGAGGACAGCCTGGCCTATATGGTGGATTTG  750

seq1  AAACCATTCTGAATAACTTAAGAGAACCTTATTTCTAAATCAATACTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATTCTGAATAACTTAAGAGAACCTTATTTCTAAATCAATACTAAA  800

seq1  TGGAGATCATTTAATTGGAGGTGGTAGTGAGTGCTTACCTAGCCTCTACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATCATTTAATTGGAGGTGGTAGTGAGTGCTTACCTAGCCTCTACC  850

seq1  AAGCCCCTGGTCTCAATTTCCAACATCATCAAAAACATTTTAAATTTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCTGGTCTCAATTTCCAACATCATCAAAAACATTTTAAATTTATT  900

seq1  ATATATTTTATTATTTAAAACAAAATTTAAATTTAAATATGTCTTTGGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTTATTATTTAAAACAAAATTTAAATTTAAATATGTCTTTGGAT  950

seq1  TATATTCTTCCCCTCGCCCAAGTTTTTCCATATCATCCCCCTCTATCCAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCTTCCCCTCGCCCAAGTTTTTCCATATCATCCCCCTCTATCCAC  1000

seq1  CCAACTTTCAATTCTTTCTCAACTAAAATACAATAAACAATCCCCCAACC  1050
      |||||||||||||||||||||||||||||||||||||| ||||||||   
seq2  CCAACTTTCAATTCTTTCTCAACTAAAATACAATAAAC-ATCCCCCA---  1046

seq1  AAGCAAACAAAATAAAACAGCACCAAAAAAAAAAA-AAAGAAAAGAAA  1097
       ||||||||||   ||||||||||||||||||||| ||||||||||||
seq2  CAGCAAACAAA--TAAACAGCACCAAAAAAAAAAAGAAAGAAAAGAAA  1092

seq1: chr10_14236015_14237189
seq2: B6Ng01-087C02.g_69_1222 (reverse)

seq1  TATATTAGCTGGGGAGATGGCTCAGTGGGTAAATGAATATTTTCATGTCC  50
      |||| ||||||||||||||  ||||| |||||||| |||| |||   |||
seq2  TATA-TAGCTGGGGAGATG--TCAGT-GGTAAATG-ATATATTCCATTCC  45

seq1  CACCCTGCTCCACATACACACCAACTCAAAGTGGGGGAAGGGAACCAATG  100
         ||||   |||| ||||||| ||||||||||||||||||||||  |||
seq2  --ACCTG--TCACA-ACACACC-ACTCAAAGTGGGGGAAGGGAAC--ATG  87

seq1  CTACAGAACATTTCCTTGGCAATACTCGTGAGTGGAGTATGATGGAAGAA  150
      ||||||||   |||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAAACATTCCTTGGCAATACTCGTGAGTGGAGTATGATGGAAGAA  137

seq1  ATTCTGTTGGGAACAATCGCTTGGTCAAAGTGAAGTTTAAAAATCACACT  200
      | |||| ||||||||||||||  |||||||||||||||||||||||||||
seq2  A-TCTG-TGGGAACAATCGCT--GTCAAAGTGAAGTTTAAAAATCACACT  183

seq1  CTTCATCTTGGTCAGCCACGTGAAGTCAAGACTAATCGTGTGAGACTGGG  250
      | ||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  C-TCATC-TGGTCAGCCACGTGAAGTCAAGACTAATCGTGTGAGACTGGG  231

seq1  TGGTATGGTTCAGCCTTGCCTTGATAGTGTCAGGTTCTTTGGGAATTTGT  300
      |||||||| |||||| ||||||||||||||||||||||||||||||||||
seq2  TGGTATGG-TCAGCC-TGCCTTGATAGTGTCAGGTTCTTTGGGAATTTGT  279

seq1  GTCTAAAGAGAATGGACGCATGAGGAGAGTGTACCGGAGGACAGAAGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAAGAGAATGGACGCATGAGGAGAGTGTACCGGAGGACAGAAGAAC  329

seq1  TGCATTCTGGTTTTACTCTACATGGCTGTCAATCAACTGTTCCTAAAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCTGGTTTTACTCTACATGGCTGTCAATCAACTGTTCCTAAAGTC  379

seq1  AATCTCTCCTCATTTATTAGAAAAAAAGAAAAAGAATAAATTAACTCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTCCTCATTTATTAGAAAAAAAGAAAAAGAATAAATTAACTCCCC  429

seq1  CCTTTTTGTGGTGTGAGAGTGTTCATAATAATCTGCTGAGCAGTTGGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTGTGGTGTGAGAGTGTTCATAATAATCTGCTGAGCAGTTGGTGA  479

seq1  AATAAAAACTACTTCGGCACACTGCAAAACACATGGATAGCGTTTGATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAACTACTTCGGCACACTGCAAAACACATGGATAGCGTTTGATTC  529

seq1  AGCCTTAAAATTCAACTTTTTCCTTTGAAGAAATTTAACAAGGCACACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTAAAATTCAACTTTTTCCTTTGAAGAAATTTAACAAGGCACACCT  579

seq1  AATATTTATCTATTACTAACCTGTGTGTTTATACCCTACAATTATAGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTATCTATTACTAACCTGTGTGTTTATACCCTACAATTATAGTTA  629

seq1  TTTTGCCATTGCTTATTAATTAGTTTAAATTAGTGATTATTACAATGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCATTGCTTATTAATTAGTTTAAATTAGTGATTATTACAATGAGG  679

seq1  TGTTTAAACTCAACTACTCCCTTAAAAGTCAAAGGAAAAGCTGGGCATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAACTCAACTACTCCCTTAAAAGTCAAAGGAAAAGCTGGGCATGG  729

seq1  TGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTT  779

seq1  CTGAGTTTGAGGTCAGCCTGATTTACAAAGTGAGTTCCAGGACAGCCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTTGAGGTCAGCCTGATTTACAAAGTGAGTTCCAGGACAGCCAGG  829

seq1  GCTACAGAGAAACCCTGTCTCAAAAAACAAAACAAAACAAACAAACAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGAGAAACCCTGTCTCAAAAAACAAAACAAAACAAACAAACAAAA  879

seq1  AAAAACCAAACAAACAAATAAACAAAAGTCAAAGGAAGAAACAGAAGGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCAAACAAACAAATAAACAAAAGTCAAAGGAAGAAACAGAAGGGA  929

seq1  CAGCGAGGAGTAAGTAACTAGTTTTTAAAACTTACTTTATACAGAAATAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGAGGAGTAAGTAACTAGTTTTTAAAACTTACTTTATACAGAAATAA  979

seq1  TGAACTTTTCTGTTCATGGATATTTAATCCTCCAGAGAAACAAGGGAGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTTCTGTTCATGGATATTTAATCCTCCAGAGAAACAAGGGAGAA  1029

seq1  AAATATAAATAAGATTGCATGTGCTACCAAGCAAGGTTGTGGAAGACACA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAATAAGATTGCATGTGCTACCAAGCAAGGTTGTGGAAGACACA  1079

seq1  GTTACAGAAAACTTAATGCAATTCCCCTTAAATGTTTAAAAATTTGTGTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGAAAACTTAATGCAATTCCCCTTAAATGTTTAAAAATTTGTGTT  1129

seq1  CTCACTGGATTGAGTAACAGAATTC  1175
      |||||||||||||||||||||||||
seq2  CTCACTGGATTGAGTAACAGAATTC  1154