BAC Information

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BAC

Clone NameB6Ng01-087M01
Chromosome10 (Build37)
Map Location 87,870,202 - 88,039,897
singlet/doubletdoublet
Overlap geneGnptab, Sycp3, Chpt1, 8030451F13Rik
Upstream geneAscl1, Pah, LOC100041517, ENSMUSG00000058934, Igf1, Tyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik
Downstream geneLOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8, Tmem16d, Gas2l3, Nr1h4, EG627532, Slc17a8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087M01.bB6Ng01-087M01.g
ACCDH900790DH900791
length5231,119
definitionDH900790|Mus musculus domesticus DNA, BAC clone: B6Ng01-087M01, 5' end.DH900791|Mus musculus domesticus DNA, BAC clone: B6Ng01-087M01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,039,369 - 88,039,897)(87,870,202 - 87,871,346)
sequence
caaagggaaatgagtttaagaggtgcattgtctcgtgtccactcctggtg
cgcctggactcactgagggcttccacatgtgtgccagtgaacaagcaaaa
aaccaacacaataaaatataaatgcccagtccagcattttccaaccctct
ccgatcactaaagtcttccactgagcaagaccaagttttatacccaggtg
aatctgctcccgagttttgaagtaacaaacaccagggtgtctctatgact
atgttgtaatattttgtttaaagaaatggtaagatttatccttggttgaa
agtaatgtagagccactaaaatagtatttgtggtaaatatttaagtagat
cacacaaaatcctaccttctcagtaatttttaaactgcttgtagtaaaca
ttgtgggtacgtggatcttccgtatactgtgtatgaggtcaactaaggtc
ctctgaggccctattttgaaaagtgacaatgtatattatttattcaaacc
ctatcctgcatgctttggggagg
gaattctcttccaagagaacggtgctgaagagggcgtggctggaggaggg
aggtgtggttaaagaagtattgacagcagtatgagcagcatcttgcgagt
tcctagccatactcagtgagagtgagcacccaggatgtcctgagaacaac
ctctagccctaacgctaaccctgattgtgaagcctcggctgctggggtca
cactcgactacggcacacatgtgtcttcattttcctgacaaagcatcggg
acccattacctctctggtctccatttctagtcaggtttacccgattgctt
ggtcttccctagtttcttggataagcgacataggcgtgtgtctcagggca
catgaaaatacctttttcctggtatgtttcttcctccagcttccacactg
gctcattcccaggttttacactgtgttctacaatgccgtggtctcagctc
tgtgctgaagttgcctagatctcgtgcatactgagaaaacactctaccag
tgggctccattcctatcccggactatttcccagtaaagcaatctctaata
tctctatctaaaaatagtccttacgtagactttctatattttccctgtga
cgttttacctctcagacttcatatctgtttagtttttactcagctagact
ataaatgcctcatctcttctggagggtagggtgagagcagggcctcagca
taacccaggctgacccgagatcatcttttcttgggcctcttgagagtttt
gtaattataggtaggtgctgccaagctctcgctcacatctttcaagcaaa
aggtggttgtcggttgtcacttggacaattctcccatgaagtaattaatc
catgatggaagtatttatatatatatacatattgcccaatcctgtgtccg
ggctgcagaagggcaaatggagcgtggatttcctccttgctatgaccaga
tatctgacaagagagacttgaagaagacagtttattctggctggtgattc
atagtggggaaggtggtagctcaagctttgcagccagcagttgtagatat
gagccaaggcggaatcaggctccagctagttcccttgcccccgttgttat
ataattttaaatttaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_88039369_88039897
seq2: B6Ng01-087M01.b_43_571 (reverse)

seq1  CCTCCCCAAAGCATGCAGGCTAGGGTTTGAATAAATAATATACATTGTCA  50
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCTCCCCAAAGCATGCAGGATAGGGTTTGAATAAATAATATACATTGTCA  50

seq1  CTTTTCAAAATAGGGCCTCAGAGGACCTTAGTTGACCTCATACACAGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAAAATAGGGCCTCAGAGGACCTTAGTTGACCTCATACACAGTAT  100

seq1  ACGGAAGATCCACGTACCCACAATGTTTACTACAAGCAGTTTAAAAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAAGATCCACGTACCCACAATGTTTACTACAAGCAGTTTAAAAATTA  150

seq1  CTGAGAAGGTAGGATTTTGTGTGATCTACTTAAATATTTACCACAAATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGGTAGGATTTTGTGTGATCTACTTAAATATTTACCACAAATAC  200

seq1  TATTTTAGTGGCTCTACATTACTTTCAACCAAGGATAAATCTTACCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGTGGCTCTACATTACTTTCAACCAAGGATAAATCTTACCATTT  250

seq1  CTTTAAACAAAATATTACAACATAGTCATAGAGACACCCTGGTGTTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAACAAAATATTACAACATAGTCATAGAGACACCCTGGTGTTTGTT  300

seq1  ACTTCAAAACTCGGGAGCAGATTCACCTGGGTATAAAACTTGGTCTTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAAACTCGGGAGCAGATTCACCTGGGTATAAAACTTGGTCTTGCT  350

seq1  CAGTGGAAGACTTTAGTGATCGGAGAGGGTTGGAAAATGCTGGACTGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAAGACTTTAGTGATCGGAGAGGGTTGGAAAATGCTGGACTGGGC  400

seq1  ATTTATATTTTATTGTGTTGGTTTTTTGCTTGTTCACTGGCACACATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATTTTATTGTGTTGGTTTTTTGCTTGTTCACTGGCACACATGTG  450

seq1  GAAGCCCTCAGTGAGTCCAGGCGCACCAGGAGTGGACACGAGACAATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCTCAGTGAGTCCAGGCGCACCAGGAGTGGACACGAGACAATGCA  500

seq1  CCTCTTAAACTCATTTCCCTTTGGAATTC  529
      |||||||||||||||||||||||||||||
seq2  CCTCTTAAACTCATTTCCCTTTGGAATTC  529

seq1: chr10_87870202_87871346
seq2: B6Ng01-087M01.g_69_1187

seq1  GAATTCTCTTCCAAGAGAACGGTGCTGAAGAGGGCGTGGCTGGAGGAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCCAAGAGAACGGTGCTGAAGAGGGCGTGGCTGGAGGAGGG  50

seq1  AGGTGTGGTTAAAGAAGTATTGACAGCAGTATGAGCAGCATCTTGCGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGGTTAAAGAAGTATTGACAGCAGTATGAGCAGCATCTTGCGAGT  100

seq1  TCCTAGCCATACTCAGTGAGAGTGAGCACCCAGGATGTCCTGAGAACAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCCATACTCAGTGAGAGTGAGCACCCAGGATGTCCTGAGAACAAC  150

seq1  CTCTAGCCCTAACGCTAACCCTGATTGTGAAGCCTCGGCTGCTGGGGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCCCTAACGCTAACCCTGATTGTGAAGCCTCGGCTGCTGGGGTCA  200

seq1  CACTCGACTACGGCACACATGTGTCTTCATTTTCCTGACAAAGCATCGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGACTACGGCACACATGTGTCTTCATTTTCCTGACAAAGCATCGGG  250

seq1  ACCCATTACCTCTCTGGTCTCCATTTCTAGTCAGGTTTACCCGATTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTACCTCTCTGGTCTCCATTTCTAGTCAGGTTTACCCGATTGCTT  300

seq1  GGTCTTCCCTAGTTTCTTGGATAAGCGACATAGGCGTGTGTCTCAGGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCCCTAGTTTCTTGGATAAGCGACATAGGCGTGTGTCTCAGGGCA  350

seq1  CATGAAAATACCTTTTTCCTGGTATGTTTCTTCCTCCAGCTTCCACACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAATACCTTTTTCCTGGTATGTTTCTTCCTCCAGCTTCCACACTG  400

seq1  GCTCATTCCCAGGTTTTACACTGTGTTCTACAATGCCGTGGTCTCAGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTCCCAGGTTTTACACTGTGTTCTACAATGCCGTGGTCTCAGCTC  450

seq1  TGTGCTGAAGTTGCCTAGATCTCGTGCATACTGAGAAAACACTCTACCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGAAGTTGCCTAGATCTCGTGCATACTGAGAAAACACTCTACCAG  500

seq1  TGGGCTCCATTCCTATCCCGGACTATTTCCCAGTAAAGCAATCTCTAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCCATTCCTATCCCGGACTATTTCCCAGTAAAGCAATCTCTAATA  550

seq1  TCTCTATCTAAAAATAGTCCTTACGTAGACTTTCTATATTTTCCCTGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATCTAAAAATAGTCCTTACGTAGACTTTCTATATTTTCCCTGTGA  600

seq1  CGTTTTACCTCTCAGACTTCATATCTGTTTAGTTTTTACTCAGCTAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTACCTCTCAGACTTCATATCTGTTTAGTTTTTACTCAGCTAGACT  650

seq1  ATAAATGCCTCATCTCTTCTGGAGGGTAGGGTGAGAGCAGGGCCTCAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGCCTCATCTCTTCTGGAGGGTAGGGTGAGAGCAGGGCCTCAGCA  700

seq1  TAACCCAGGCTGACCCGAGATCATCTTTTCTTGGGCCTCTTGAGAGTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCAGGCTGACCCGAGATCATCTTTTCTTGGGCCTCTTGAGAGTTTT  750

seq1  GTAATTATAGGTAGGTGCTGCCAAGCTCTCGCTCACATCTTTCAAGCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTATAGGTAGGTGCTGCCAAGCTCTCGCTCACATCTTTCAAGCAAA  800

seq1  AGGTGGTTGTCGGTTGTCACTTGGACAATTCTCCCATGAAGTAATTAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTTGTCGGTTGTCACTTGGACAATTCTCCCATGAAGTAATTAATC  850

seq1  CATGATGGAAGTATTTATATATATATACATATTGCCCAATCCTGTGTCCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGGAAGTATTTATATATATATACATATTGCCCAATCCTGTGTCCG  900

seq1  GGCTGCAAGAAAGGGCAAATGGAGCGTGGATTTCCTCCTTGCTATGACCA  950
      |||||||   ||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCA--GAAGGGCAAATGGAGCGTGGATTTCCTCCTTGCTATGACCA  948

seq1  GATATCTGACAAAGAGAGACTTGAAGGAAGGACAGGTTTATTCTGGCTGG  1000
      |||||||||| |||||||||||||||  | |||| |||||||||||||||
seq2  GATATCTGAC-AAGAGAGACTTGAAG--AAGACA-GTTTATTCTGGCTGG  994

seq1  TGATTCATAGTGGGGAAGGCGTGGTAGCTCAAAGCTTTGCAGGCAGGGCA  1050
      ||||||||||||||||||  |||||||||| ||||||||||| ||  |||
seq2  TGATTCATAGTGGGGAAG--GTGGTAGCTC-AAGCTTTGCAGCCA--GCA  1039

seq1  GGTTGGTAGATATGGAAGCCAAGGCGGGAAATCCAGTGCT-CAGCTAGTT  1099
      |  | |||||||||  |||||||||||  ||| ||| ||| |||||||||
seq2  G--TTGTAGATATG--AGCCAAGGCGG--AAT-CAG-GCTCCAGCTAGTT  1081

seq1  TTCCCCCTTTGCCCCCCCTTTTTGTTATTTATTATTTT---TTTAATAT  1145
           || ||||||||     ||||||  ||| |||||   ||||||||
seq2  -----CCCTTGCCCCC----GTTGTTA--TATAATTTTAAATTTAATAT  1119