BAC Information

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BAC

Clone NameB6Ng01-087M14
Chromosome10 (Build37)9 (Build37)
Map Location 104,053,473 - 104,054,2655,336,648 - 5,337,863
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087M14.bB6Ng01-087M14.g
ACCDH900814DH900815
length6171,166
definitionDH900814|Mus musculus domesticus DNA, BAC clone: B6Ng01-087M14, 5' end.DH900815|Mus musculus domesticus DNA, BAC clone: B6Ng01-087M14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,473 - 104,054,265)(5,336,648 - 5,337,863)
sequence
gaattccatctcacaccagtcagaatggctaagatcaaaaattcaggtga
cagcagatgctggtgaggacgtggagaaagagggacactcctccactgtt
ggtgggattgcaagcttgtacaaccactctggaaatcaatctggtggttt
ctcagaaaattggacatggtactaccagaggatcccgcaatacctcccct
gggcatatatccagaagatattccaactagtaagaaagaaacatgctcca
ctatattcatagcagccttatttataatagccataagctggaaagagccc
agatgcccctcaacagaggaatggatacaaaaaatgtggtacatttacac
aatggagtactactcagctattaaaaagaatgaacttatgaaattcctag
gcaaatggttggacctggagggcattatcctgagtgaggtaacccaatca
caaaagaactcacacaatatgtactcactgataagtggatattagcccag
aaacttagaatacccaggatataagttaccatttgcaaaacacatgaaac
tcaagaagaacgaagaccaaagtgtggacacttttttttttttttttttt
ttttttttttttttttt
gaattcaagaccagcctaagcaacacagtgggattctgttccatagacaa
gcaaacaagcaaaaataaaacaaaaaaaaaatttaccaaaagagaaattt
gttttatttatttgtgtacataaataaaaagaaagcaaataattgtttta
agttgggttctttaatggagaatgttatttaaattaaagtggtagtaaat
tgaagtgatatggagtatcaagctgtagttttaaactttagggctcatat
gatatccacattactagaaagaaaaaaaaaagaaacagcaacaacaggga
atttagctctgaatttagcagtgagatgaaacaaaactgtaattgtaatg
gtcagcttttaatacccaactttacagaatctaaagtatcttagtgagaa
gcctctgaccaagccagtgaagcattatgttgattaggtcacatgataca
ggaaggcctagcctaatagtgggaaggatcatatccaaaatctaaggcct
ggataaaaagttgtacatcagaacccatcactctcttcttttaggttatg
agcacaaagccataagttcctggaaacttaatgtccatcatgatggattg
tagcaacaaaactctgaaacacagcaaacccattctttctacagttgcat
ttgttgtatcattttcaaaacaagggtggaagtacataagatagtatata
aatgatgacattatatgccttgcacacattaagagatttaaaatttatca
gaaaggatgttgatatgactcaatgagtcaatacacttgctgaaaggctg
aagacatcagtctgatccttgggttccatgataaaagaagaaaagtgaca
cattcaaaaattgtcttttggctctatataggattggcatatggacacac
acacatgcacaaataaatgtataaaaatttaataacatgtattagcatga
agagttgtatcagaatctactgcactattgctgtgtgaatgctatatagg
agcatgacatacaaatagtatttatccattcagggacatctggtgtattt
aaccaaatataaaaccaccatcaaacgagtatgaacagtggaataacgat
tctatagactttactgaacaaaagaaatagcttctccacctagtacctcc
aaattgactaattgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053473_104054265
seq2: B6Ng01-087M14.b_50_631 (reverse)

seq1  AAAGTGTCCACACTTTGGTCTTCGTTC-TCTTGAGTTTAATGTGTTTAGC  49
      ||||||||||||||||||||||||||| |||||||||| |||||||| ||
seq2  AAAGTGTCCACACTTTGGTCTTCGTTCTTCTTGAGTTTCATGTGTTTTGC  50

seq1  AAATTGTATCTTATATCTTGGGTATCCTAAGTTTCTGGGCTAATATCCAC  99
      |||| ||| |||||||| ||||||| ||||||||||||||||||||||||
seq2  AAATGGTAACTTATATCCTGGGTATTCTAAGTTTCTGGGCTAATATCCAC  100

seq1  TTATCAGTGAGTACATATTGCGCGAGTTCCTTTGTGATTGGGTTACCGCA  149
      |||||||||||||||||||| | |||||| ||||||||||||||||| ||
seq2  TTATCAGTGAGTACATATTGTGTGAGTTCTTTTGTGATTGGGTTACCTCA  150

seq1  CTCAGGATGATACTCTCCAGGTCCATCCATTTGCCTAGGAATTTCATAAA  199
      |||||||| || | ||||||||||| ||||||||||||||||||||||| 
seq2  CTCAGGATAATGCCCTCCAGGTCCAACCATTTGCCTAGGAATTTCATAAG  200

seq1  TTCATTCTTTTTAATAGCTCCATTTACATTTAATTTAATTAATGTAATTA  249
      ||||||||||||||||||                                
seq2  TTCATTCTTTTTAATAGC--------------------------------  218

seq1  CAATTAATTAATTTATTAATTAAATAATTTAATAATTTAATTGATAAATT  299
                                                        
seq2  --------------------------------------------------  218

seq1  AATTTAATTAATTAATTTAATTAATTAAATTAAATAATAATTTAATAATA  349
                                                        
seq2  --------------------------------------------------  218

seq1  AATTAAATATTTTAAAATTAATAATAATTTTATAAGTAAATAATTTAATT  399
                                      | ||||            
seq2  --------------------------------TGAGTA------------  224

seq1  AATGTAATTTAATTAATGTAATTACATTACATTTAATAGCTCCATTGTGT  449
                       |||                   |||||||||||
seq2  -----------------GTA-------------------CTCCATTGTGT  238

seq1  AAATGTACCACATTTTCTGTATCTATTCCTCTGTTGAGGGGCATCTGGGT  499
      |||||||||||||||| |||||| ||||||||||||||||||||||||| 
seq2  AAATGTACCACATTTTTTGTATCCATTCCTCTGTTGAGGGGCATCTGGGC  288

seq1  TCTTTCCAGCTCCTGGCTATTATAAATAAGGCTGCTATGAATATAGTGGA  549
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCAGCTTATGGCTATTATAAATAAGGCTGCTATGAATATAGTGGA  338

seq1  GCATGTGTCCTTCTTACCGGTTGGGGCATCTTCTGGATATATGCCCAGAA  599
      |||||| || |||||||  |||||   |||||||||||||||||||||  
seq2  GCATGTTTCTTTCTTACTAGTTGGAATATCTTCTGGATATATGCCCAGGG  388

seq1  GAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTTCTGACGAAC  649
      |||||||||| |||||||| |||||||| ||||||||||||||||  |||
seq2  GAGGTATTGCGGGATCCTCTGGTAGTACCATGTCCAATTTTCTGAGAAAC  438

seq1  CGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCAACA  699
      | |||||  |||||||||||||||||||||||| ||||||||||||||||
seq2  CACCAGATTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAACA  488

seq1  ATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCAC  749
       ||||||||||| ||||||||||||| ||||| |||||||||||||||||
seq2  GTGGAGGAGTGTCCCTCTTTCTCCACGTCCTCACCAGCATCTGCTGTCAC  538

seq1  CTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAAT  793
      ||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGATGGAAT  582

seq1: chr9_5336648_5337863
seq2: B6Ng01-087M14.g_71_1236

seq1  GAATTCAAGACCAGCCTAAGCAACACAGTGGGATTCTGTTCCATAGACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACCAGCCTAAGCAACACAGTGGGATTCTGTTCCATAGACAA  50

seq1  GCAAACAAGCAAAAATAAAACAAAAAAAAAATTTACCAAAAGAGAAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAAGCAAAAATAAAACAAAAAAAAAATTTACCAAAAGAGAAATTT  100

seq1  GTTTTATTTATTTGTGTACATAAATAAAAAGAAAGCAAATAATTGTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTTATTTGTGTACATAAATAAAAAGAAAGCAAATAATTGTTTTA  150

seq1  AGTTGGGTTCTTTAATGGAGAATGTTATTTAAATTAAAGTGGTAGTAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGTTCTTTAATGGAGAATGTTATTTAAATTAAAGTGGTAGTAAAT  200

seq1  TGAAGTGATATGGAGTATCAAGCTGTAGTTTTAAACTTTAGGGCTCATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGATATGGAGTATCAAGCTGTAGTTTTAAACTTTAGGGCTCATAT  250

seq1  GATATCCACATTACTAGAAAGAAAAAAAAAAGAAACAGCAACAACAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCCACATTACTAGAAAGAAAAAAAAAAGAAACAGCAACAACAGGGA  300

seq1  ATTTAGCTCTGAATTTAGCAGTGAGATGAAACAAAACTGTAATTGTAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCTCTGAATTTAGCAGTGAGATGAAACAAAACTGTAATTGTAATG  350

seq1  GTCAGCTTTTAATACCCAACTTTACAGAATCTAAAGTATCTTAGTGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTTTTAATACCCAACTTTACAGAATCTAAAGTATCTTAGTGAGAA  400

seq1  GCCTCTGACCAAGCCAGTGAAGCATTATGTTGATTAGGTCACATGATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGACCAAGCCAGTGAAGCATTATGTTGATTAGGTCACATGATACA  450

seq1  GGAAGGCCTAGCCTAATAGTGGGAAGGATCATATCCAAAATCTAAGGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCCTAGCCTAATAGTGGGAAGGATCATATCCAAAATCTAAGGCCT  500

seq1  GGATAAAAAGTTGTACATCAGAACCCATCACTCTCTTCTTTTAGGTTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAAAAGTTGTACATCAGAACCCATCACTCTCTTCTTTTAGGTTATG  550

seq1  AGCACAAAGCCATAAGTTCCTGGAAACTTAATGTCCATCATGATGGATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAAAGCCATAAGTTCCTGGAAACTTAATGTCCATCATGATGGATTG  600

seq1  TAGCAACAAAACTCTGAAACACAGCAAACCCATTCTTTCTACAGTTGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAACAAAACTCTGAAACACAGCAAACCCATTCTTTCTACAGTTGCAT  650

seq1  TTGTTGTATCATTTTCAAAACAAGGGTGGAAGTACATAAGATAGTATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTATCATTTTCAAAACAAGGGTGGAAGTACATAAGATAGTATATA  700

seq1  AATGATGACATTATATGCCTTGCACACATTAAGAGATTTAAAATTTATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGACATTATATGCCTTGCACACATTAAGAGATTTAAAATTTATCA  750

seq1  GAAAGGATGTTGATATGACTCAATGAGTCAATACACTTGCTGACAAGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAAAGGATGTTGATATGACTCAATGAGTCAATACACTTGCTGA-AAGGCT  799

seq1  GAAGACATCAGTCTGATCCTTGGGTTCCATGATAAAAGAAGAAAAGTGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACATCAGTCTGATCCTTGGGTTCCATGATAAAAGAAGAAAAGTGAC  849

seq1  ACATTCCACAAATTGTCTTTTGGCTCTATATAGGATTGGCATATGGACAC  900
      ||||| || |||||||||||||||||||||||||||||||||||||||||
seq2  ACATT-CAAAAATTGTCTTTTGGCTCTATATAGGATTGGCATATGGACAC  898

seq1  ACACACATGCACAAATAAATGTTATAAAAATTTTAATAACATGTATTAGC  950
      ||||||||||||||||||||| |||||||| |||||||||||||||||||
seq2  ACACACATGCACAAATAAATG-TATAAAAA-TTTAATAACATGTATTAGC  946

seq1  AAGGAAGAGTTGTAATCAGAATCCTACTGCACTATTGGCTGTGGTGAATT  1000
       | |||||||||| |||||||| ||||||||||||| ||||| ||||| |
seq2  -ATGAAGAGTTGT-ATCAGAAT-CTACTGCACTATT-GCTGT-GTGAA-T  990

seq1  GCTATATAGGAAGCATGACATACAATATAGTATTTATCCATTTCAGGGAC  1050
      |||||||||| |||||||||||||| |||||||||||||| |||||||||
seq2  GCTATATAGG-AGCATGACATACAA-ATAGTATTTATCCA-TTCAGGGAC  1037

seq1  CAATCT-GTGTATTTAAACAAAATAATTAAAAACAACACATCAAACAGAA  1099
        |||| |||||||||| ||    |||  ||||| || |||||||| || 
seq2  --ATCTGGTGTATTTAACCA----AATATAAAACCAC-CATCAAAC-GA-  1078

seq1  GTTATGAAACAAGTGGATTTAACAGATATCTATAGAACATTTTATCTTAA  1149
        ||||||   ||||||  |||| ||| |||||||   | |||| ||   
seq2  -GTATGAA--CAGTGGA-ATAAC-GAT-TCTATAG---ACTTTA-CT--G  1116

seq1  AACAAAAGAATATACCTTCTTCTCAACACCTCATGGTACCTTCTCCAAAA  1199
      |||||||||| ||| |||||        || | | ||||||    | |||
seq2  AACAAAAGAA-ATAGCTTCT--------CCACCTAGTACCT----CCAAA  1153

seq1  TTGAACATATAATTGTA  1216
      ||||     ||||||||
seq2  TTGA----CTAATTGTA  1166