BAC Information

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BAC

Clone NameB6Ng01-087N19
Chromosome10 (Build37)X (Build37)
Map Location 104,053,903 - 104,054,36361,965,006 - 61,966,236
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087N19.bB6Ng01-087N19.g
ACCDH900870DH900871
length9751,218
definitionDH900870|Mus musculus domesticus DNA, BAC clone: B6Ng01-087N19, 5' end.DH900871|Mus musculus domesticus DNA, BAC clone: B6Ng01-087N19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,903 - 104,054,363)(61,965,006 - 61,966,236)
sequence
gaattctcacctgaggtataccgaatggctgagaagcacctgaaaaaaaa
tgttcagcatccttaattctcagggaaatgtaaatcaaaacaaccctgaa
attgtacctcacaccagtcagaatggctaagataaaaaattcagttgaca
gcagatgctggcaagaatgtggagaagaggaacactcctgcattgttgga
gggattgcaagcttgtaaaaccactctgggaatcattctggcagttaatc
agaaaattggacatagtactacaggaggatcctgcaatacctctcctggg
catatatacagaagatgttccaactggtaagtaggatacatgctccacta
tgttcacagcagccttatttataatagccagaagctggaaagaacccaga
ttcacctcaagagaggaatggatacagaaaatgtggtacatttacacaat
ggagtactactcagctattaaaaacaatgaatttatgaaattcctaggca
aatgatggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
agaactcacataatatgtactcactgataagtggatattagctcagaaac
ttagaatacccaagatataatatacaatttgtgcaacacatgaaactcta
gaagaatgaagagcaaactgtggacactttgccttttcttagaactggga
ataaaacacccatggaaggagttacagagacaaagtttggagctgagacg
aaagggtggaccatctagagactgccatatctggggatccatcccataat
tagcccccaaatcctgacaccattgcacacactaggaagattttgctgaa
agtaccctgatatagctcttttttgtgagactatgccagggcctagcaaa
cacagaagtgaatgctcacagtcagctatttgatggatcacagggccccc
aatggaggagctagaagaaagtacc
gaattcaaattaatattgtaatctgtcttctttagagaattgtaaaaata
actaactcaagttagcattaagaagaaaagaataaaaattataacagttt
gaagaaatatatataataagaaaaagaagtgaacacaatgtgtatagtaa
gaagctccattcttaatacttttaaacactagttttcagcatagatacaa
aagcgtatctctgttttctcatgtttctgcaattaaaatatataaagaat
tgtacatagattttgttatcaaatgcagatatttagcaagggtttctgat
atgtgcttttctcagtgtttacccattctacaagtggctgacagctaaac
accaggaatatattcattcttgcgattattagttcaatccaagggaccaa
taaattcaacatttcattaattctacttctttatacatagaccgcagctt
tggggctataactagacaacggcaaacagactatcactggtctgtagtat
ccccaacattatttttgctttttactttgaaacagtgtctcatattaatt
ttctcaggctccacttgaactcactttacctccaactgtctttgaacttt
aattcttttgccgcagtttactatgtagctatgattacattacatgcctg
tgccatctgacagtcttcatgttttattagcatgtagagtgagagttaaa
tttgtcctgtaatacccatttgatcagggcactaatcttatttataaaac
atcaatatcatgagttaaatactttataaggcttgattagctagtaaata
tcacattcagaagaaagtttcaatatacaaatttgggaaaaacaaagcca
ggctagagaactgagttctatatatttgcttttaacacattttaatactg
gttttcaacccattttgttacaatggaatttggatggattttttgagaat
ttcattcatacattttggtcatattatgttctttccccagctactcccag
tacctcctccaatttcttttttctttttctactcgtgatttagtgggaag
actggtgaaatctcatctggttactcttccattctgaactaaacattata
tcactgtgcatgatagtcaccaaccttcttgagagtaatgcattattttt
aatagaaattacctttaattcgacatggtgtacatgcaacagaatgaatc
tctatatctgtaagtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053903_104054363
seq2: B6Ng01-087N19.b_49_520 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          ||||||||||||||||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || |||||||| |||||| | ||||||||||||||||||| |||||||||
seq2  TCCATTCCTCTCTTGAGGTGAATCTGGGTTCTTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      ||||||||||||||| |||| |||||||||||||| |||| |||||| ||
seq2  ATAAATAAGGCTGCTGTGAACATAGTGGAGCATGTATCCTACTTACCAGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      |||  ||||||||| |||||||||||| ||||||||||| ||||||||| 
seq2  TGGAACATCTTCTGTATATATGCCCAGGAGAGGTATTGCAGGATCCTCCT  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      ||||||||||||||||||||||||  ||| ||||||  |||| |||||||
seq2  GTAGTACTATGTCCAATTTTCTGATTAACTGCCAGAATGATTCCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      |||| ||||||| ||||||||| ||||||||| ||||||||||||| |||
seq2  GGTTTTACAAGCTTGCAATCCCTCCAACAATGCAGGAGTGTTCCTC-TTC  299

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||| || ||||||||||||||||| |||||||||| ||||||||||
seq2  TCCACATTCTTGCCAGCATCTGCTGTCAACTGAATTTTTTATCTTAGCCA  349

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      ||||||||||||||||||  ||| |||||||||||||||||| |||||||
seq2  TTCTGACTGGTGTGAGGTACAATTTCAGGGTTGTTTTGATTTACATTTCC  399

seq1  CTGATGATTAAGGATGTTGAACA--TTTTTTCAGGTGCTTCTCTGCCATT  438
      ||||  |||||||||| ||||||  |||||||||||||||||| ||||||
seq2  CTGAGAATTAAGGATGCTGAACATTTTTTTTCAGGTGCTTCTCAGCCATT  449

seq1  CGGTATTCCTCAGGTGAGAATTC  461
      |||||| ||||||||||||||||
seq2  CGGTATACCTCAGGTGAGAATTC  472

seq1: chrX_61965006_61966236
seq2: B6Ng01-087N19.g_67_1284 (reverse)

seq1  CTCACTTACAGATTATTAGA-ATTCATCTTGTTTGCTAGTACAACCATGT  49
      |||||||||||||   |||| ||||||  || ||||  |||| |||||||
seq2  CTCACTTACAGAT--ATAGAGATTCATTCTG-TTGCATGTAC-ACCATGT  46

seq1  CTGAAATTAAAAGTATATTCTTATTTAAAATAATTACAATTTACTCTCAA  99
      |   ||||||| ||| |||  |||| ||||||| | ||  ||||||||||
seq2  C--GAATTAAAGGTA-ATTTCTATTAAAAATAA-TGCA--TTACTCTCAA  90

seq1  GAA-GTTGGTGACTATCCATGGCACAGTGATATAATGTATTTAGTTCAGA  148
      ||| |||||||||||| ||| ||||||||||||||||  |||||||||||
seq2  GAAGGTTGGTGACTAT-CAT-GCACAGTGATATAATG--TTTAGTTCAGA  136

seq1  ATGG-AGAGTAACCAGAATGAAGATTTCA-CAGTC-TCTCACTAAATCAC  195
      |||| ||||||||||| ||| |||||||| ||||| || |||||||||||
seq2  ATGGAAGAGTAACCAG-ATG-AGATTTCACCAGTCTTCCCACTAAATCAC  184

seq1  GAAGTAAGGAAAAAG-AAAAAGAAATTGGA-GAGGTACTGGGAGTAGCTG  243
      | ||||  ||||||| |||||||||||||| |||||||||||||||||||
seq2  G-AGTA--GAAAAAGAAAAAAGAAATTGGAGGAGGTACTGGGAGTAGCTG  231

seq1  GGGAAAGAACATAATATGACCAAAATGTATTGAATGAAATTCTCAAAAAA  293
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGGAAAGAACATAATATGACCAAAATGTA-TGAATGAAATTCTCAAAAAA  280

seq1  TCCATCCAAATTCCATTGTAACAAAATGGGTTGAAAACCAGTATTAAAAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCAAATTCCATTGTAACAAAATGGGTTGAAAACCAGTATTAAAAT  330

seq1  GTGTTAAAAGCAAATATATAGAACTCAGTTCTCTAGCCTGGCTTTGTTTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAAAAGCAAATATATAGAACTCAGTTCTCTAGCCTGGCTTTGTTTT  380

seq1  TCCCAAATTTGTATATTGAAACTTTCTTCTGAATGTGATATTTACTAGCT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAATTTGTATATTGAAACTTTCTTCTGAATGTGATATTTACTAGCT  430

seq1  AATCAAGCCTTATAAAGTATTTAACTCATGATATTGATGTTTTATAAATA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGCCTTATAAAGTATTTAACTCATGATATTGATGTTTTATAAATA  480

seq1  AGATTAGTGCCCTGATCAAATGGGTATTACAGGACAAATTTAACTCTCAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGTGCCCTGATCAAATGGGTATTACAGGACAAATTTAACTCTCAC  530

seq1  TCTACATGCTAATAAAACATGAAGACTGTCAGATGGCACAGGCATGTAAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATGCTAATAAAACATGAAGACTGTCAGATGGCACAGGCATGTAAT  580

seq1  GTAATCATAGCTACATAGTAAACTGCGGCAAAAGAATTAAAGTTCAAAGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCATAGCTACATAGTAAACTGCGGCAAAAGAATTAAAGTTCAAAGA  630

seq1  CAGTTGGAGGTAAAGTGAGTTCAAGTGGAGCCTGAGAAAATTAATATGAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGAGGTAAAGTGAGTTCAAGTGGAGCCTGAGAAAATTAATATGAG  680

seq1  ACACTGTTTCAAAGTAAAAAGCAAAAATAATGTTGGGGATACTACAGACC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTTTCAAAGTAAAAAGCAAAAATAATGTTGGGGATACTACAGACC  730

seq1  AGTGATAGTCTGTTTGCCGTTGTCTAGTTATAGCCCCAAAGCTGCGGTCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATAGTCTGTTTGCCGTTGTCTAGTTATAGCCCCAAAGCTGCGGTCT  780

seq1  ATGTATAAAGAAGTAGAATTAATGAAATGTTGAATTTATTGGTCCCTTGG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAAAGAAGTAGAATTAATGAAATGTTGAATTTATTGGTCCCTTGG  830

seq1  ATTGAACTAATAATCGCAAGAATGAATATATTCCTGGTGTTTAGCTGTCA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACTAATAATCGCAAGAATGAATATATTCCTGGTGTTTAGCTGTCA  880

seq1  GCCACTTGTAGAATGGGTAAACACTGAGAAAAGCACATATCAGAAACCCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTGTAGAATGGGTAAACACTGAGAAAAGCACATATCAGAAACCCT  930

seq1  TGCTAAATATCTGCATTTGATAACAAAATCTATGTACAATTCTTTATATA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAATATCTGCATTTGATAACAAAATCTATGTACAATTCTTTATATA  980

seq1  TTTTAATTGCAGAAACATGAGAAAACAGAGATACGCTTTTGTATCTATGC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTGCAGAAACATGAGAAAACAGAGATACGCTTTTGTATCTATGC  1030

seq1  TGAAAACTAGTGTTTAAAAGTATTAAGAATGGAGCTTCTTACTATACACA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACTAGTGTTTAAAAGTATTAAGAATGGAGCTTCTTACTATACACA  1080

seq1  TTGTGTTCACTTCTTTTTCTTATTATATATATTTCTTCAAACTGTTATAA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTCACTTCTTTTTCTTATTATATATATTTCTTCAAACTGTTATAA  1130

seq1  TTTTTATTCTTTTCTTCTTAATGCTAACTTGAGTTAGTTATTTTTACAAT  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTCTTTTCTTCTTAATGCTAACTTGAGTTAGTTATTTTTACAAT  1180

seq1  TCTCTAAAGAAGACAGATTACAATATTAATTTGAATTC  1231
      ||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAAGAAGACAGATTACAATATTAATTTGAATTC  1218