BAC Information

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BAC

Clone NameB6Ng01-088B09
Chromosome10 (Build37)
Map Location 49,938,151 - 49,938,809
singlet/doubletsinglet
Overlap genenone
Upstream geneGrik2
Downstream geneLOC629652, Ascc3, Sim1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088B09.bB6Ng01-088B09.g
ACCDH901038DH901039
length1,0351,222
definitionDH901038|Mus musculus domesticus DNA, BAC clone: B6Ng01-088B09, 5' end.DH901039|Mus musculus domesticus DNA, BAC clone: B6Ng01-088B09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctaaatctaaatctaaacaaaaaattctcaataaaggaaactc
aaatgcagggaaaacacttaacagaatgtaacatcctcagtcatcaggaa
aatgcaaatcaaaacaactttgagattccatgttacacttgtcagaatgg
ctaagatcaatagttcaataacttaagtgacagcacaggctggctacgtg
gaataagggggacactcttccattactgatggggagtgtgaatctaaatg
gctacgaaatcactgtggcagcacttcagaaaagtgggctccatttatag
taagatccagatataccatcttgtacatatgcacaaaggatgcttcatcc
taccacaagaacactcatccgtgttcattgttgctcgattcaataatacc
cagaagttgaaaagaacctagatgtccctcaacagtagaatgatggataa
agaacgtgtatgtttttacaatggagtattactcagttgtttaaaaaaaa
tgacattatgacatttgtagtcaaatatatgaaactatatgctatagatt
ccagtttagtacttttatcagggcttctgaacgtgtggaaaaagtggtcc
ctgatttttgtgccttctaatttttctttttctattgacttgttttatct
aacttttatgtgatagtttttgtttgatctgattctattatattttgttg
gcttattgttatttcctagaagcctcttcttttctaacgagagacataaa
tggagtagatacagatagaagaagagatggagaaatactgggaagagtag
aggaaggggagatttaatatatattgtatgatgaaaaaatctatttctaa
taaaagatagaagagaaatattctgaaaagatacatttatgagaaatgta
ttttttataagtgaagaatggtatataaatttaacacatttagagttggt
ttggttttgaaatgaatatcttcttaaatcagcagttcttaacctatggg
tcaacaagctttgtgtgtggtgtcggggggggggg
gaattctcggtcctttctccatcaccatgtattcctgtgagtcaccatgc
ttcccaccatgatgataatgaactaaatctctgaaactataagcaagccc
catttaaatactttatttttcataagagctactgtaggcatggtgtcttt
tcatagcaatagaacactgactaattcagaatttagtaccaagaactggg
gtattgctcaaacatatcaaactgtgttgcttgttggtagaatgtggact
ttgggattaggaaagtagtggaacacatcatgctggacgtaatgggccat
actagtaggagcatggaaaacagtgctgggggtgatttaaactgcgtggg
tatggcttatgatggttcagaggaggagaatattagtaatggtcttagtg
gcctaagagtattcttgtggtgttttgttaaagaatatgggtgctttctg
aacctgttaaaaaatatctacctaaagctaaattgaataatttggaccaa
tggatttaggagaagagatataaaacaatagactagtgttgattctgttg
tatagttattttttctttttctttttttattttacactgttcagacacac
cagaagagggcatcatatcccattacatatggttgtgagccaccatgtag
ttgctgagatttgaactcaggacctctggaagagcagccagtgctcttaa
catctgagccatctctctagccctattgtgtagttattaatggtccctct
tatgcaaggagcaaactgagcaaggaaaaacataaaatgtacaggtagaa
gtgaaaaggagcatcagcaagtgtaatggagattaaattcagttctcaag
gagataaaacgtttgaagaaaagcgtgatgcttaagagaacaaagagagt
gggaatctcagacagatgccacccagctaagttaagcagtgaaggaagcc
atcactggatttcccatcactagggaactctgggttcccaagccagataa
ggatggtagagtatttccattcctcaagagctctttagagagcaaagaag
gattggggcttgcctccctatatgggtttagctacttcactctacggagt
tcggaagccattttattatctgacttcctcactctcatgggtgatctctg
tactgaactgttttccaagacctccagctgaatcgttttgttttttagta
ttaacttttttccatatttata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_49938151_49938809
seq2: B6Ng01-088B09.b_425_1082

seq1  TTGTTGCTCGATTCAATAATACCCAGAAGTTGAAAAGAACCTAGATGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCTCGATTCAATAATACCCAGAAGTTGAAAAGAACCTAGATGTCC  50

seq1  CTCAACAGTAGAATGATGGATAAAGAACGTGTATGTTTTTACAATGGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACAGTAGAATGATGGATAAAGAACGTGTATGTTTTTACAATGGAGT  100

seq1  ATTACTCAGTTGTTTAAAAAAAATGACATTATGACATTTGTAGTCAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCAGTTGTTTAAAAAAAATGACATTATGACATTTGTAGTCAAATA  150

seq1  TATGAAACTATATGCTATAGATTCCAGTTTAGTACTTTTATCAGGGCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAACTATATGCTATAGATTCCAGTTTAGTACTTTTATCAGGGCTTC  200

seq1  TGAACGTGTGGAAAAAGTGGTCCCTGATTTTTGTGCCTTCTAATTTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACGTGTGGAAAAAGTGGTCCCTGATTTTTGTGCCTTCTAATTTTTCT  250

seq1  TTTTCTATTGACTTGTTTTATCTAACTTTTATGTGATAGTTTTTGTTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATTGACTTGTTTTATCTAACTTTTATGTGATAGTTTTTGTTTGA  300

seq1  TCTGATTCTATTATATTTTGTTGGCTTATTGTTATTTCCTAGAAGCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTCTATTATATTTTGTTGGCTTATTGTTATTTCCTAGAAGCCTCT  350

seq1  TCTTTTCTAACGAGAGACATAAATGGAGTAGATACAGATAGAAGAAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTAACGAGAGACATAAATGGAGTAGATACAGATAGAAGAAGAGA  400

seq1  TGGAGAAATACTGGGAAGAGTAGAGGAAGGGGAGATTTAATATATATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAATACTGGGAAGAGTAGAGGAAGGGGAGATTTAATATATATTGT  450

seq1  ATGATGAAAAAATCTATTTCTAATAAAAGATAGAAGAGAAATATTCTGAA  500
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATGATGAAAAAATCTATTTCTAATAAAAGATAGAAGAGAAATATTCTG-A  499

seq1  AAAGATACATTTATGAGAAATGTA-TTTTTATAAGTGAAGAAATGGTATA  549
      |||||||||||||||||||||||| ||||||||||||||| |||||||||
seq2  AAAGATACATTTATGAGAAATGTATTTTTTATAAGTGAAG-AATGGTATA  548

seq1  TAAATTTAACACATTTAGAGTTGGTTTGGTTTTGAAATGAAATATCTTCT  599
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAAATTTAACACATTTAGAGTTGGTTTGGTTTTGAAATG-AATATCTTCT  597

seq1  TAAACCAGCAGTTCTTAACCTATGGGTC-ACAAGCCTTTGTGTGT-GTGT  647
      |||| ||||||||||||||||||||||| ||||| |||||||||| ||||
seq2  TAAATCAGCAGTTCTTAACCTATGGGTCAACAAG-CTTTGTGTGTGGTGT  646

seq1  CGGGGGGGGGGG  659
      ||||||||||||
seq2  CGGGGGGGGGGG  658