BAC Information

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BAC

Clone NameB6Ng01-088D11
Chromosome10 (Build37)18 (Build37)
Map Location 104,053,526 - 104,054,36337,259,911 - 37,260,737
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088D11.bB6Ng01-088D11.g
ACCDH901134DH901135
length9961,077
definitionDH901134|Mus musculus domesticus DNA, BAC clone: B6Ng01-088D11, 5' end.DH901135|Mus musculus domesticus DNA, BAC clone: B6Ng01-088D11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,526 - 104,054,363)(37,259,911 - 37,260,737)
sequence
gaattctcacctgaggaatacagaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacttcactccaatcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctgatggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagctgtcccaaccgataagaaggacacaagctccactat
gttcatagcagccttgtttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
tagtactaatcagctatttaaaaaatgaatttatgaaattcctaggcaaa
tggatggacccggagggcatcatcctgagtgaggtaacccaatcacaaag
gaactcgcacaatatgtactcactgataagtggatattagcccagaaact
taggatacccaagatataagatacaatttgctaaacacatgaaattcaag
aagaacgaagaccaaagtgtggacactttgccccttcttagaattgggaa
caaaacacccatggaaggagttacagagacaaaatttggagctgtgacga
aaggatggaccatctagtgattgacatatgcagggatctatcccataatg
tatatacacatacagacatgcagatgaatagctcaaaataacattaattt
ctaaccatgcacctgggatttagcagtgctaaaggttgagatcagctctg
aaagtgcaggttattgtgctaaatgggtaacagttcattttcactatttt
aatatttttgtttgtatgaatgtttgacacatgtatgtctgtgtac
gaattcagtttgcaagtgttttattgagaatatttgcatctatgttcata
gggatattggtttactattttgtttttgttgttggttttttgtatcatag
tggtattataaaaagaagtagaaaatgttccttcagtttttattttcaga
ataatttgaagagtattggcattaattcttctttgaaagtcatgtaggat
tctgccctgaatctatctggccctagacttttttgttcgtttctgagact
ttaattactccttctatttcactagggattccatatctgtttaaatttat
ttgatcttgatttaactttggtaagtcatagatgtcaaaaactccatcca
tttcttctagatgatatggttacatttttatgttgtattctgtattcatt
tatgtgacatttccaactttgaagtatacattttaaaaatttgtcatttt
gcttttctaaatttttccagtgtcttttgcaatgctccctttcatctcta
attaatttgaatttttttctctccctttttaaagttaatttggctgagga
cttgtcattctccttgatttttttcaaagaatcaatctttgctttatttt
ttaatattggttttgttttatttcattgatttaaatcccaagtttgattc
tttcttgccatttactcttttggggtcttatttcttcttattattctaca
gctttcaggtgtgtcattaagtttctaattacaaaatttctctagttatt
ttaaaaagtattttatttgttatttttaaattactgccattcccccaccc
cctgcttctagtccccctggcagtctgtatgtagaagaatgaaaatagat
ccatagttatcactttgcacaaagctcaattccaagtggaaaaacctctc
tagtgttttgtggatacttagtgctagaaacttgcctcttagaccactgc
actgacattgtctcccatgggtttgggtaagttatgttttcatttaattc
aattctgaaagatttaaattttctttctgacttttatgagttgtaaactt
cagtgttgttgatatccaacaacaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053526_104054363
seq2: B6Ng01-088D11.b_48_672 (reverse)

seq1  TGTATCTTATATCTTGGGTATCCTAAGTTTCTGGGCTAATATCCACTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTTATATCTTGGGTATCCTAAGTTTCTGGGCTAATATCCACTTAT  50

seq1  CAGTGAGTACATATTGCGCGAGTTCCTTTGTGATTGGGTTACCGCACTCA  100
      |||||||||||||||| |||||||||||||||||||||||||| ||||||
seq2  CAGTGAGTACATATTGTGCGAGTTCCTTTGTGATTGGGTTACCTCACTCA  100

seq1  GGATGATACTCTCCAGGTCCATCCATTTGCCTAGGAATTTCATAAATTCA  150
      ||||||| | |||| |||||||||||||||||||||||||||||||||||
seq2  GGATGATGCCCTCCGGGTCCATCCATTTGCCTAGGAATTTCATAAATTCA  150

seq1  TTCTTTTTAATAGCTCCATTTACATTTAATTTAATTAATGTAATTACAAT  200
      || |||| ||||||                                    
seq2  TT-TTTTAAATAGC------------------------------------  163

seq1  TAATTAATTTATTAATTAAATAATTTAATAATTTAATTGATAAATTAATT  250
                                                        
seq2  --------------------------------------------------  163

seq1  TAATTAATTAATTTAATTAATTAAATTAAATAATAATTTAATAATAAATT  300
                                                        
seq2  --------------------------------------------------  163

seq1  AAATATTTTAAAATTAATAATAATTTTATAAGTAAATAATTTAATTAATG  350
                               | || ||||                
seq2  -------------------------TGATTAGTA----------------  172

seq1  TAATTTAATTAATGTAATTACATTACATTTAATAGCTCCATTGTGTAAAT  400
                                         || ||||||||||||
seq2  -----------------------------------CTACATTGTGTAAAT  187

seq1  GTACCACATTTTCTGTATCTATTCCTCTGTTGAGGGGCATCTGGGTTCTT  450
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTT  237

seq1  TCCAGCTCCTGGCTATTATAAATAAGGCTGCTATGAATATAGTGGAGCAT  500
      ||||||| |||||||||||||| |||||||||||||| |||||||||| |
seq2  TCCAGCTTCTGGCTATTATAAACAAGGCTGCTATGAACATAGTGGAGCTT  287

seq1  GTGTCCTTCTTACCGGTTGGGGCATCTTCTGGATATATGCCCAGAAGAGG  550
      |||||||||||| |||||||| || ||||||||||||||||||| |||||
seq2  GTGTCCTTCTTATCGGTTGGGACAGCTTCTGGATATATGCCCAGGAGAGG  337

seq1  TATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTTCTGACGAACCGCC  600
      ||||||||||||||||||||||||||||||||||||||||| |||||  |
seq2  TATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTTCTGAGGAACCATC  387

seq1  AGACGGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCAACAATGG  650
      |||| |||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAACAATGG  437

seq1  AGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGA  700
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGTTCCCCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGA  487

seq1  ATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTG  750
      ||||||||||||||||||||||| ||| |||| |||||||||||||||||
seq2  ATTTTTGATCTTAGCCATTCTGATTGGAGTGAAGTGGAATCTCAGGGTTG  537

seq1  TTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGG  587

seq1  TGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTC  838
      |||||||| ||||||| |||||||||||||||||||||
seq2  TGCTTCTCAGCCATTCTGTATTCCTCAGGTGAGAATTC  625

seq1: chr18_37259911_37260737
seq2: B6Ng01-088D11.g_327_1145

seq1  TCCTTCTATTTCACTAGGGATTCCATATCTGTTTAAATTTATTTGATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTATTTCACTAGGGATTCCATATCTGTTTAAATTTATTTGATCTT  50

seq1  GATTTAACTTTGGTAAGTCATAGATGTCAAAAACTCCATCCATTTCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAACTTTGGTAAGTCATAGATGTCAAAAACTCCATCCATTTCTTCT  100

seq1  AGATGATATGGTTACATTTTTATGTTGTATTCTGTATTCATTTATGTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATATGGTTACATTTTTATGTTGTATTCTGTATTCATTTATGTGAC  150

seq1  ATTTCCAACTTTGAAGTATACATTTTAAAAATTTGTCATTTTGCTTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAACTTTGAAGTATACATTTTAAAAATTTGTCATTTTGCTTTTCT  200

seq1  AAATTTTTCCAGTGTCTTTTGCAATGCTCCCTTTCATCTCTAATTAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTCCAGTGTCTTTTGCAATGCTCCCTTTCATCTCTAATTAATTT  250

seq1  GAATTTTTTTCTCTCCCTTTTTAAAGTTAATTTGGCTGAGGACTTGTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTTTCTCTCCCTTTTTAAAGTTAATTTGGCTGAGGACTTGTCAT  300

seq1  TCTCCTTGATTTTTTTCAAAGAATCAATCTTTGCTTTATTTTTTAATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTGATTTTTTTCAAAGAATCAATCTTTGCTTTATTTTTTAATATT  350

seq1  GGTTTTGTTTTATTTCATTGATTTAAATCCCAAGTTTGATTCTTTCTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGTTTTATTTCATTGATTTAAATCCCAAGTTTGATTCTTTCTTGC  400

seq1  CATTTACTCTTTTGGGGTCTTATTTCTTCTTATTATTCTACAGCTTTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACTCTTTTGGGGTCTTATTTCTTCTTATTATTCTACAGCTTTCAG  450

seq1  GTGTGTCATTAAGTTTCTAATTACAAAATTTCTCTAGTTATTTTAAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCATTAAGTTTCTAATTACAAAATTTCTCTAGTTATTTTAAAAAG  500

seq1  TATTTTATTTGTTATTTTTAAATTACTGCCATTCCCCCACCCCCTGCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTTGTTATTTTTAAATTACTGCCATTCCCCCACCCCCTGCTTC  550

seq1  TAGTCCCCCTGGCAGTCTGTATGTAGAAGAATGAAAATAGATCCATAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCCCCTGGCAGTCTGTATGTAGAAGAATGAAAATAGATCCATAGTT  600

seq1  ATCACTTTGCACAAAGCTCAATTCCAAGTGGAAAAAACCTCTCTAGTGTT  650
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATCACTTTGCACAAAGCTCAATTCCAAGTGG-AAAAACCTCTCTAGTGTT  649

seq1  TTGTGGATACTTAGTGCTAGAAACTTGCCTCTTAGAACCACTGCACTGAC  700
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTGTGGATACTTAGTGCTAGAAACTTGCCTCTTAG-ACCACTGCACTGAC  698

seq1  ATTGTCTCCCATGGGTTTGGGTAAGTTATGTTTTCATTTTAATTCAATTC  750
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATTGTCTCCCATGGGTTTGGGTAAGTTATGTTTTCA-TTTAATTCAATTC  747

seq1  TGAAAAGATTTTAAATTTTCTTCTTGACTTCTATGAGTTTGTAAACTTTC  800
      || ||||| |||||||||||||  |||||| |||||| |||||||| |||
seq2  TG-AAAGA-TTTAAATTTTCTTTCTGACTTTTATGAG-TTGTAAAC-TTC  793

seq1  AGTTGTTGTTGATATCCAACAACAATC  827
      || ||||||||||||||||||||||||
seq2  AG-TGTTGTTGATATCCAACAACAATC  819