BAC Information

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BAC

Clone NameB6Ng01-088D22
Chromosome10 (Build37)
Map Location 82,511,027 - 82,627,274
singlet/doubletdoublet
Overlap geneChst11
Upstream geneBC062115, 4933439G19Rik, BC024063, AU041133, LOC100042712, B230315N10Rik, LOC100042718, EG237412, LOC666611, Gm1553, LOC544716, 1190007I07Rik, Tdg, Glt8d2, Hcfc2, Nfyb, 1700028I16Rik, Txnrd1, Eid3, EG216185
Downstream geneSlc41a2, D10Wsu102e, LOC666748, Aldh1l2, A230046K03Rik, Appl2, 1500009L16Rik, LOC100041225, C230099D08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088D22.bB6Ng01-088D22.g
ACCDH901154DH901155
length1,167589
definitionDH901154|Mus musculus domesticus DNA, BAC clone: B6Ng01-088D22, 5' end.DH901155|Mus musculus domesticus DNA, BAC clone: B6Ng01-088D22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,511,027 - 82,512,210)(82,626,686 - 82,627,274)
sequence
gaattcaactcatacacgtatgtatccatgggcatatgtaagaggccata
gctttggattccatgttaataacaagcaggcgcattctggagtcaagcac
acagagggattgtgaaggacagtgctttttattatattacattagttttc
ctttatgacatttggtaggtcaaccccatggcagcaggtcagctgagtta
tggaggaaatgaacctgaaaagtggaagagaggctgtaacgcgataaagc
ttatcaattcaatttatttctcctatgctaaatgcagtcagcaaggccgg
atatctcgatgcctggcagagatgcgcgggaggagataggtctcaatggc
aaagcttccgaaaggctcagtgggtaaaggcacttgctgccgagcctggt
gatctgagctcagtttacaggactcacatggtggaagacacgcacacaca
cacgcgcacacacacgcgcgcacacacacgtgtgcacacacgcgcacaca
cacgtgcacacacacatgcacacacgtgcacacacgtgcacacacgcgcg
cgcacacacactagcgcacccacacacacaagtgcacacacacacacacg
tgcacacacacacacacacgtgcacacacacacacacgtacacacacaca
tacacacacacacgcgcgcatacacgcgcacacacacatgcacacacaga
cacgtgcacacacacacgtgcacacacacatgcacacacacgcgcacaca
cgcgtgcacacacacatacacacacacacacaatgggtagatgttaagca
ataaaaaaaggtttagtgttgatgcttgggagcccgaaaatcttctcaca
ctttgggagaaggtttagtataagtttagtgtttgcgttcataaacccag
caagccagcttcttcagcccagtgttcactctggaaagacttccgaccca
ttcattgtgtggctcaagggaccagtcagagcagcctcacagctgtagat
gctgtagatcccttccctgctgagagcacccacgtcacgtcacgactcct
tcagttcacccacagcgctgtgatgtggctctcatcttcagaatctgaca
gcctgcactcggcctgttcctcacatctcctcatcctcgacctgctctct
ctgcaagtgcagaaccg
gaattcaatgactccaaaccactctgagcttccattaacagaaagcagac
ggcccaagctggctctcccgggttagcatggtgtacccctctcttgtgcc
agagaagggcagaggggtgtctgtcagcagacagctggcttgccagcttc
agggaaaaaaagattcaggctataatgcataggatgcttacaatctggtt
ctttcttaacatcatgaggcacgtgggacataaacagggaggagtgtgtg
cccctacacaccctcagaggccaaatcttcccacgtgctaaggaagagag
gcctgcagccaaagggccctggtgacgcaggaccgacaccttccatttcc
ctcctatctctggcgacaaatgcctggagtcaaaccaacctgcatttcag
gcctttccaggctggggttctgggaccccaagagggtaactttgtctgag
gacagagactgttttgaattatgaattaataccatgtggactttctggaa
aaagaccaggagaaacgggtcatgggctttatctgaagagggttatgact
caagcctccagaagagaggggggagaggagaggggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_82511027_82512210
seq2: B6Ng01-088D22.b_42_1208

seq1  GAATTCAACTCATACACGTATGTATCCATGGGCATATGTAAGAGGCCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCATACACGTATGTATCCATGGGCATATGTAAGAGGCCATA  50

seq1  GCTTTGGATTCCATGTTAATAACAAGCAGGCGCATTCTGGAGTCAAGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGATTCCATGTTAATAACAAGCAGGCGCATTCTGGAGTCAAGCAC  100

seq1  ACAGAGGGATTGTGAAGGACAGTGCTTTTTATTATATTACATTAGTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGGATTGTGAAGGACAGTGCTTTTTATTATATTACATTAGTTTTC  150

seq1  CTTTATGACATTTGGTAGGTCAACCCCATGGCAGCAGGTCAGCTGAGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGACATTTGGTAGGTCAACCCCATGGCAGCAGGTCAGCTGAGTTA  200

seq1  TGGAGGAAATGAACCTGAAAAGTGGAAGAGAGGCTGTAACGCGATAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAAATGAACCTGAAAAGTGGAAGAGAGGCTGTAACGCGATAAAGC  250

seq1  TTATCAATTCAATTTATTTCTCCTATGCTAAATGCAGTCAGCAAGGCCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAATTCAATTTATTTCTCCTATGCTAAATGCAGTCAGCAAGGCCGG  300

seq1  ATATCTCGATGCCTGGCAGAGATGCGCGGGAGGAGATAGGTCTCAATGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCGATGCCTGGCAGAGATGCGCGGGAGGAGATAGGTCTCAATGGC  350

seq1  AAAGCTTCCGAAAGGCTCAGTGGGTAAAGGCACTTGCTGCCGAGCCTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTCCGAAAGGCTCAGTGGGTAAAGGCACTTGCTGCCGAGCCTGGT  400

seq1  GATCTGAGCTCAGTTTACAGGACTCACATGGTGGAAGACACGCACACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGAGCTCAGTTTACAGGACTCACATGGTGGAAGACACGCACACACA  450

seq1  CACGCGCACACACACGCGCGCACACACACGTGTGCACACACGCGCACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCGCACACACACGCGCGCACACACACGTGTGCACACACGCGCACACA  500

seq1  CACGTGCACACACACATGCACACACGTGCACACACGTGCACACACGCGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGCACACACACATGCACACACGTGCACACACGTGCACACACGCGCG  550

seq1  CGCACACACACTAGCGCACCCACACACACAAGTGCACACACACACACACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACACACACTAGCGCACCCACACACACAAGTGCACACACACACACACG  600

seq1  TGCACACACACACACACACGTGCACACACACACACACGTACACACACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACACACACACACACGTGCACACACACACACACGTACACACACACA  650

seq1  TACACACACACACGCGCGCATACACGCGCACACACACATGCACACACAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACACACGCGCGCATACACGCGCACACACACATGCACACACAGA  700

seq1  CACGTGCACACACACACGTGCACACACACATGCACACACACGCGCACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGCACACACACACGTGCACACACACATGCACACACACGCGCACACA  750

seq1  CGCGTGCACACACACATACACACACACACACAATGGGTAGATGTTAAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTGCACACACACATACACACACACACACAATGGGTAGATGTTAAGCA  800

seq1  ATAAAAAAAGGTTTAGTGTTGATGCTTGGGAGCCCGAAAATCTTCTCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAAGGTTTAGTGTTGATGCTTGGGAGCCCGAAAATCTTCTCACA  850

seq1  CTTTGGGAGAAGGTTTAGTATAAGTTTAGTGTTTGCGTTCATAAACCCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGAGAAGGTTTAGTATAAGTTTAGTGTTTGCGTTCATAAACCCAG  900

seq1  CAAGCCAGCTTC-TCAGCCCAGTGTTCACTCTGGAAAGACTTCCGACCCA  949
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAGCTTCTTCAGCCCAGTGTTCACTCTGGAAAGACTTCCGACCCA  950

seq1  TTCATTGTGTGGCTCAAGGGACCAGTCAGAGCAGCCTCACAGCTGTAAGA  999
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTCATTGTGTGGCTCAAGGGACCAGTCAGAGCAGCCTCACAGCTGT-AGA  999

seq1  TGCTGTAAGAATCCCTCCCCTGCTGGAGAGCACCCACGTCACGTCACGAC  1049
      |||||||   |||||| ||||||| |||||||||||||||||||||||||
seq2  TGCTGTA--GATCCCTTCCCTGCT-GAGAGCACCCACGTCACGTCACGAC  1046

seq1  TCCTCCAGTTCACCCACAGCCGCCTGTGGATGTGGCTCTCATTCTTCAGA  1099
      |||| |||||||||||||||   |||| ||||||||||||| ||||||||
seq2  TCCTTCAGTTCACCCACAGC--GCTGT-GATGTGGCTCTCA-TCTTCAGA  1092

seq1  TCGTGACAGGGCTGCACTCGGCGCTGTTCCTCACATCTTCTCACTCCTCG  1149
         ||||| | ||||||||||| ||||||||||||||| |||| ||||||
seq2  ATCTGACA-GCCTGCACTCGGC-CTGTTCCTCACATCTCCTCA-TCCTCG  1139

seq1  GCCTTGCTTCCCTCCTCTGCAAAGTGCAGAGACCG  1184
       || ||||   || |||||| ||||||||| ||||
seq2  ACC-TGCT---CT-CTCTGC-AAGTGCAGA-ACCG  1167

seq1: chr10_82626686_82627274
seq2: B6Ng01-088D22.g_68_656 (reverse)

seq1  CCCTCCCCTCTCCTCTCCCCCCTCTCTTCTGGAGGCTTGAGTCATAACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCTCTCCTCTCCCCCCTCTCTTCTGGAGGCTTGAGTCATAACCC  50

seq1  TCTTCAGATAAAGCCCATGACCCGTTTCTCCTGGTCTTTTTCCAGAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGATAAAGCCCATGACCCGTTTCTCCTGGTCTTTTTCCAGAAAGT  100

seq1  CCACATGGTATTAATTCATAATTCAAAACAGTCTCTGTCCTCAGACAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGGTATTAATTCATAATTCAAAACAGTCTCTGTCCTCAGACAAAG  150

seq1  TTACCCTCTTGGGGTCCCAGAACCCCAGCCTGGAAAGGCCTGAAATGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTCTTGGGGTCCCAGAACCCCAGCCTGGAAAGGCCTGAAATGCAG  200

seq1  GTTGGTTTGACTCCAGGCATTTGTCGCCAGAGATAGGAGGGAAATGGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTTGACTCCAGGCATTTGTCGCCAGAGATAGGAGGGAAATGGAAG  250

seq1  GTGTCGGTCCTGCGTCACCAGGGCCCTTTGGCTGCAGGCCTCTCTTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCGGTCCTGCGTCACCAGGGCCCTTTGGCTGCAGGCCTCTCTTCCTT  300

seq1  AGCACGTGGGAAGATTTGGCCTCTGAGGGTGTGTAGGGGCACACACTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGTGGGAAGATTTGGCCTCTGAGGGTGTGTAGGGGCACACACTCCT  350

seq1  CCCTGTTTATGTCCCACGTGCCTCATGATGTTAAGAAAGAACCAGATTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTTATGTCCCACGTGCCTCATGATGTTAAGAAAGAACCAGATTGT  400

seq1  AAGCATCCTATGCATTATAGCCTGAATCTTTTTTTCCCTGAAGCTGGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCCTATGCATTATAGCCTGAATCTTTTTTTCCCTGAAGCTGGCAA  450

seq1  GCCAGCTGTCTGCTGACAGACACCCCTCTGCCCTTCTCTGGCACAAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTGTCTGCTGACAGACACCCCTCTGCCCTTCTCTGGCACAAGAGA  500

seq1  GGGGTACACCATGCTAACCCGGGAGAGCCAGCTTGGGCCGTCTGCTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTACACCATGCTAACCCGGGAGAGCCAGCTTGGGCCGTCTGCTTTCT  550

seq1  GTTAATGGAAGCTCAGAGTGGTTTGGAGTCATTGAATTC  589
      |||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGGAAGCTCAGAGTGGTTTGGAGTCATTGAATTC  589