BAC Information

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BAC

Clone NameB6Ng01-088E07
Chromosome10 (Build37)
Map Location 53,114,765 - 53,238,269
singlet/doubletdoublet
Overlap geneEG432460
Upstream geneNepn, D10Ertd438e, EG629689, Zfa, Slc35f1, Pln
Downstream geneMcm9, Asf1a, LOC100042554, 4930589M24Rik, Man1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088E07.bB6Ng01-088E07.g
ACCDH901172DH901173
length1,0401,040
definitionDH901172|Mus musculus domesticus DNA, BAC clone: B6Ng01-088E07, 5' end.DH901173|Mus musculus domesticus DNA, BAC clone: B6Ng01-088E07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,114,765 - 53,115,822)(53,237,215 - 53,238,269)
sequence
gaattcattaaaccttcactctggggagtatccattttctagacactgat
aaagcaacttgctcagaactgcatggttaatggggaaggtcaggatgaga
gaccaagtagggcagtctccctggttctcatcaggggtggtcctctgcca
gcctacagccatagctccctcactcctctctgggcaagaagtgaggatga
ctgcttggcgacagcacagcccacacccagaaaaaaacaattccagtgcg
cttgggaaactcctgtcttctgaaagccctcagaaagctggcttcgttct
gttgacaaactaaattataaacaccgtaatggctgctttcaaaacccatt
gtggaattcaatctttccttgtttactgagctggcagaaaatcactccgg
tcatttgttctgtctgtcactcatctgcatgtcttctgtacgtcacttct
gtatgtcgggtactgttaggcacagagcaaagatgagtcagggtgactgt
gaacagctctgaagcttgtgggggggggggctgggcagcctagagcatgt
gcagtcagactcagcagatagctattcatgaggtaatatttgaaaaaatt
gagtcacgttttacatcactgcacggggaaaaggcattgagttactcatt
tgagaaaacagttatatctccaacactagcaaaattatgctacaaggatc
aggtaagctaaacctgggtgaatggctgcctggctacggttctgaaagac
cacttgagcatctgctgactgaaaacaggcccacctgagagtccctgact
cttctcttactcatcagaggtgggtggaactctctacgaagacataacag
acatcagtgaagattacgtggactgcttctttcactctagtctgagattc
taaattacttatccagcattgtttgttgtggcagggtctaacactgcacc
agaggccgatgggggacttatgaactgtgctgtctggtgtgagaattcga
cttggctgccagtactggcaaacattgagatgtaaacttc
tcttttctcatccttataaggaagttcgtggtttatctgtgtgttcagtg
cctgtgtgtgtatgtgtgtgcacgcatgcgtgcatgtgcatgtgcgtgtg
tgtgtgtgtatgtgcgccatttcaaatttttgcaaaggttttgcaatact
gagagatgcataactcgttgcaggcctctctctgttccaccgagataacc
atgtactaggctaattattcaaaatcctcttttcctcctttcagatgtac
ctttcgtctttattgaacagactcatttactgtgtttaaatattttactc
aaggttcttcacgcatggcttcacaccagattaactgaataattgggttt
ctggccttttagcctctggaattctgctaataaatacaattacagaaacc
ctacctaataagtacttcttaattctctattagcaaagcaggcctcttac
attgcatgcacttctttcacacacagtctagcaggatcttatttgtcagc
agacatgacctgtctgcctattgcctcaaggtcccgacttagacaaatgt
ctctgccttacattcaaaacagcttgcttccttaccagctgtgaagagcg
accatttcttaaataactgaagcaaatatatgtctgccaaattacaagaa
caaagatatttttgtaactctgtagttttgtttataatcaactcaatgtc
ctaaacattcaaaactcactgaactggctgtagatttccggatcatttaa
ataaatgactaatgctcaataaagctgagacatagccctcagctatgtct
acagcctgagcatcaagagactggggcctaactaagtgggttagcttgcc
agtcatctgaagatgcactcagaaagtccaggctaatcacaagcaccaca
gcttatatgtggcaaatctgttgttagctcttcatttgatgagtggtaag
agtctctttttatgttctcctaagaagaaagtaaaattaaaaaaaaagaa
tttattacatatcactcatagtggtaatagtgggatagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_53114765_53115822
seq2: B6Ng01-088E07.b_47_1086

seq1  GAATTCATTAAACCTTCACTCTGGGGAGTATCCATTTTCTAGACACTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAACCTTCACTCTGGGGAGTATCCATTTTCTAGACACTGAT  50

seq1  AAAGCAACTTGCTCAGAACTGCATGGTTAATGGGGAAGGTCAGGATGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAACTTGCTCAGAACTGCATGGTTAATGGGGAAGGTCAGGATGAGA  100

seq1  GACCAAGTAGGGCAGTCTCCCTGGTTCTCATCAGGGGTGGTCCTCTGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGTAGGGCAGTCTCCCTGGTTCTCATCAGGGGTGGTCCTCTGCCA  150

seq1  GCCTACAGCCATAGCTCCCTCACTCCTCTCTGGGCAAGAAGTGAGGATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACAGCCATAGCTCCCTCACTCCTCTCTGGGCAAGAAGTGAGGATGA  200

seq1  CTGCTTGGCGACAGCACAGCCCACACCCAGAAAAAAACAATTCCAGTGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGGCGACAGCACAGCCCACACCCAGAAAAAAACAATTCCAGTGCG  250

seq1  CTTGGGAAACTCCTGTCTTCTGAAAGCCCTCAGAAAGCTGGCTTCGTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAAACTCCTGTCTTCTGAAAGCCCTCAGAAAGCTGGCTTCGTTCT  300

seq1  GTTGACAAACTAAATTATAAACACCGTAATGGCTGCTTTCAAAACCCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACAAACTAAATTATAAACACCGTAATGGCTGCTTTCAAAACCCATT  350

seq1  GTGGAATTCAATCTTTCCTTGTTTACTGAGCTGGCAGAAAATCACTCCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATTCAATCTTTCCTTGTTTACTGAGCTGGCAGAAAATCACTCCGG  400

seq1  TCATTTGTTCTGTCTGTCACTCATCTGCATGTCTTCTGTACGTCACTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGTTCTGTCTGTCACTCATCTGCATGTCTTCTGTACGTCACTTCT  450

seq1  GTATGTCGGGTACTGTTAGGCACAGAGCAAAGATGAGTCAGGGTGACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTCGGGTACTGTTAGGCACAGAGCAAAGATGAGTCAGGGTGACTGT  500

seq1  GAACAGCTCTGAAGCTTGTGGGGGGGGGGGCTGGGCAGCCTAGAGCATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCTCTGAAGCTTGTGGGGGGGGGGGCTGGGCAGCCTAGAGCATGT  550

seq1  GCAGTCAGACTCAGCAGATAGCTATTCATGAGGTAATATTTGAAAAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAGACTCAGCAGATAGCTATTCATGAGGTAATATTTGAAAAAATT  600

seq1  GAGTCACGTTTTACATCACTGCACGGGGAAAAGGCATTGAGTTACTCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACGTTTTACATCACTGCACGGGGAAAAGGCATTGAGTTACTCATT  650

seq1  TGAGAAAACAGTTATATCTCCAACACTAGCAAAATTATGCTACAAGGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAACAGTTATATCTCCAACACTAGCAAAATTATGCTACAAGGATC  700

seq1  AGGTAAGCTAAACCTGGGTGAATGGCTGCCTGGCTACGGTTCTGAAAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGCTAAACCTGGGTGAATGGCTGCCTGGCTACGGTTCTGAAAGAC  750

seq1  CACTTGAGCATCTGCTGACTGAAAACAGGCCCACCTGAGAGTCCCTGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGAGCATCTGCTGACTGAAAACAGGCCCACCTGAGAGTCCCTGACT  800

seq1  CTCCTCTTACTCATCAGAGGTGGGTGGAACTCTCTACGAAGACATAACAG  850
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTACTCATCAGAGGTGGGTGGAACTCTCTACGAAGACATAACAG  850

seq1  ACATCAAGTGAAGATTACGTGGACTGCTTCTTTCAACTCTAGTCTGAGAT  900
      ||||| |||||||||||||||||||||||||||| |||||||||||||||
seq2  ACATC-AGTGAAGATTACGTGGACTGCTTCTTTC-ACTCTAGTCTGAGAT  898

seq1  TCTAAATTACTTAGTCCAGCATTGTTTGTTTGTGGCAGGGTCTAACACTG  950
      ||||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  TCTAAATTACTTA-TCCAGCATTGTTTG-TTGTGGCAGGGTCTAACACTG  946

seq1  CACCAGAGGCCGATGGGGGAACTTATGAAACATGTGCTGTTCTGGTTGTT  1000
      ||||||||||||||||||| |||||||||   ||||||| ||||| ||| 
seq2  CACCAGAGGCCGATGGGGG-ACTTATGAA--CTGTGCTG-TCTGG-TGT-  990

seq1  GTAGAATTCTGACTTGGCCTGCCAAGTACTGGCAAAACCATTGAGGATGT  1050
        ||||||| ||||||| ||||| ||||||||||||  |||||| |||||
seq2  -GAGAATTC-GACTTGG-CTGCC-AGTACTGGCAAA--CATTGA-GATGT  1033

seq1  AATACTTC  1058
      || |||||
seq2  AA-ACTTC  1040

seq1: chr10_53237215_53238269
seq2: B6Ng01-088E07.g_80_1119 (reverse)

seq1  GGCTATCCCACTATTACCACTATGAGTGATTATGTAATAAATTTCTTTTT  50
      ||||||||||||||||||||||||||||| ||||||||||||   | |||
seq2  GGCTATCCCACTATTACCACTATGAGTGA-TATGTAATAAAT---TCTTT  46

seq1  TTTTTTAATTTTTACCTTTCTTCTTTAGAAGAAAACAAAAAAAAAAAGAG  100
      ||||||||||||   |||||||| |||| ||      || | ||||||||
seq2  TTTTTTAATTTT--ACTTTCTTC-TTAGGAG------AACATAAAAAGAG  87

seq1  ACTCTTACCAACTCATCAAATGAAGAGCTAACAACAGAATTTGCCACATA  150
      ||||||||| ||||||||||||||||||||||||||| ||||||||||||
seq2  ACTCTTACC-ACTCATCAAATGAAGAGCTAACAACAG-ATTTGCCACATA  135

seq1  TAAGCTGTGGTGCTTGTGATTAGCCTGGACTTTCTGAGTGCATCTTCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGTGGTGCTTGTGATTAGCCTGGACTTTCTGAGTGCATCTTCAGA  185

seq1  TGACTGGCAAGCTAACCCACTTAGTTAGGCCCCAGTCTCTTGATGCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGCAAGCTAACCCACTTAGTTAGGCCCCAGTCTCTTGATGCTCAG  235

seq1  GCTGTAGACATAGCTGAGGGCTATGTCTCAGCTTTATTGAGCATTAGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGACATAGCTGAGGGCTATGTCTCAGCTTTATTGAGCATTAGTCA  285

seq1  TTTATTTAAATGATCCGGAAATCTACAGCCAGTTCAGTGAGTTTTGAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTAAATGATCCGGAAATCTACAGCCAGTTCAGTGAGTTTTGAATG  335

seq1  TTTAGGACATTGAGTTGATTATAAACAAAACTACAGAGTTACAAAAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGACATTGAGTTGATTATAAACAAAACTACAGAGTTACAAAAATAT  385

seq1  CTTTGTTCTTGTAATTTGGCAGACATATATTTGCTTCAGTTATTTAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCTTGTAATTTGGCAGACATATATTTGCTTCAGTTATTTAAGAA  435

seq1  ATGGTCGCTCTTCACAGCTGGTAAGGAAGCAAGCTGTTTTGAATGTAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCGCTCTTCACAGCTGGTAAGGAAGCAAGCTGTTTTGAATGTAAGG  485

seq1  CAGAGACATTTGTCTAAGTCGGGACCTTGAGGCAATAGGCAGACAGGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACATTTGTCTAAGTCGGGACCTTGAGGCAATAGGCAGACAGGTCA  535

seq1  TGTCTGCTGACAAATAAGATCCTGCTAGACTGTGTGTGAAAGAAGTGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTGACAAATAAGATCCTGCTAGACTGTGTGTGAAAGAAGTGCAT  585

seq1  GCAATGTAAGAGGCCTGCTTTGCTAATAGAGAATTAAGAAGTACTTATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTAAGAGGCCTGCTTTGCTAATAGAGAATTAAGAAGTACTTATTA  635

seq1  GGTAGGGTTTCTGTAATTGTATTTATTAGCAGAATTCCAGAGGCTAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGTTTCTGTAATTGTATTTATTAGCAGAATTCCAGAGGCTAAAAG  685

seq1  GCCAGAAACCCAATTATTCAGTTAATCTGGTGTGAAGCCATGCGTGAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAACCCAATTATTCAGTTAATCTGGTGTGAAGCCATGCGTGAAGA  735

seq1  ACCTTGAGTAAAATATTTAAACACAGTAAATGAGTCTGTTCAATAAAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGAGTAAAATATTTAAACACAGTAAATGAGTCTGTTCAATAAAGAC  785

seq1  GAAAGGTACATCTGAAAGGAGGAAAAGAGGATTTTGAATAATTAGCCTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTACATCTGAAAGGAGGAAAAGAGGATTTTGAATAATTAGCCTAG  835

seq1  TACATGGTTATCTCGGTGGAACAGAGAGAGGCCTGCAACGAGTTATGCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGTTATCTCGGTGGAACAGAGAGAGGCCTGCAACGAGTTATGCAT  885

seq1  CTCTCAGTATTGCAAAACCTTTGCAAAAATTTGAAATGGCGCACATACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGTATTGCAAAACCTTTGCAAAAATTTGAAATGGCGCACATACAC  935

seq1  ACACACACACGCACATGCACATGCACGCATGCGTGCACACACATACACAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACGCACATGCACATGCACGCATGCGTGCACACACATACACAC  985

seq1  ACAGGCACTGAACACACAGATAAACCACGAACTTCCTTATAAGGATGAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCACTGAACACACAGATAAACCACGAACTTCCTTATAAGGATGAGA  1035

seq1  AAAGA  1055
      |||||
seq2  AAAGA  1040