BAC Information

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BAC

Clone NameB6Ng01-089I16
Chromosome10 (Build37)
Map Location 111,600,304 - 111,668,159
singlet/doubletdoublet
Overlap geneCaps2
Upstream geneOsbpl8, Bbs10, Nap1l1, EG382421, Phlda1, Krr1, Glipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3
Downstream geneKcnc2, LOC100042639, 4921506J03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089I16.bB6Ng01-089I16.g
ACCDH902094DH902095
length1,1031,095
definitionDH902094|Mus musculus domesticus DNA, BAC clone: B6Ng01-089I16, 5' end.DH902095|Mus musculus domesticus DNA, BAC clone: B6Ng01-089I16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,667,047 - 111,668,159)(111,600,304 - 111,601,410)
sequence
gaattcttgcttgaaacaacaaccaaagctcttggttgcaggctgcttgc
tctggtgtggttgccttcagcatatcttcagacacagtgatttctaacag
ctttgctattcctgtatctttcttctgatccggtgattcgagaactacag
gaaaaggcaagatgcatcattgcaggtcctataaaatcatcttgatgcat
ggtgctttgaggtggagcctcctggagtcagagttcttgctgaggccaaa
accaggtaaccaacatgaagcagcctggctgctgggctgcgctttccaca
gcaggcctgcagaagctgagaacctttcctgtagaactggatgctgcaga
ctaaggaaaggaggagaaggggaaagagttatgatcagcacctgtcatct
tgggttcagtggctgaatttagcctgaatctggtctttggaatctgtgga
tgtgtaccaatgcctgacctgcccctgttccatcttttatgggtcttgtt
tattgttcatacatatgttcacacacccttcaggaagacgaaagctccaa
gcagcttatgtctgttcacagaatggtgatgagtgtgcgcccatgtggtg
ggtgttgagctgtaatcaaacaatataaaatgccagttttagaaaaaata
agtttaagacattaatttgcaacgttctgaatgtacttgataatatattt
taattttgaaagattctgaagttgctcttccacaaaaaaaaatctatgtg
aagtactacatgttaatcacctagatgtaaccattcctcaagatccatct
gtacatgtctatgtgcaagtttcctaacattatgttcacatagacattgt
taatattttggttaatctttaattatatggtgattgtcagtgattccgta
ttgcctggtggaagtgtgcactccacacgaatgaatctttaacattgcaa
agctaattaattctttagaatttgtaaagttataattcatcagaagaatt
taaaccaaaattgtctgataatctgcgagtttaaattctgactccaccca
cataaatttcaatgccctgggaacctattttttctttatcaaagaacaaa
ttg
gaattccactaaatgaatgatccactgtgatccttgccgggttttgctgg
tctcctggtgcaggagaagcctgctgtgcatgagtcccctactgtagtcc
aggccagggtttatcacacctcagatttgagctcttggtctgggaggcta
cactttaaaaaaaaaaaaaagaaagaaagaaagaaaagaaagaaagcctt
tggactccaggtgggtttgtctgctagtgtaggggtgtttgtccagactg
tagaggcagccagaggagtggaaggattagagtacagattcgggcccaga
ggtggagtcaaagtcccttttattactggggaagttggagagggccagga
ggcctagggaaccaactccagttgcctagcaaccagagactctggtctag
actgttgtgttttctgggacctgctcctgagtttgccaagggtaagcttt
cagaaggaagttcttggtggaaggaatcaccatggtttatacagcttcca
gtccttctattttcgatttggggtgtaaggagctaacactattaggtcaa
gtcagcttgccttgctccctagtgtggccctgagtcctggaaaaaggagc
tagtagattcctttgggagcactccaggtactgtaaagtaagctttaaat
tgaattaggaacgactttgtgttcagtttcagaccttgggtggattgtca
ccacggactcaaggtggactcagtccctgtccctcacgaatttaagtact
gaactgtattattaatcgcttccttgtttatgaactggatcagatgtctt
tcctttcatgtgtgttctgactttgcatgaacaaattcaaagctcgggat
acacttaccaggagtgaatagctggagttggagtggtccctgttagagac
aaggagggaatgaagccttcgtgactcagtggttaaaggcacaaagacat
taatcaacaatagtaacttacctctagcaacagctcttgctgatcaacac
aatttggtgaaaattattctgtgctgataaagtacgcttcccccccccac
caagcacacgagatggtggagatctaataaatactaagctaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_111667047_111668159
seq2: B6Ng01-089I16.b_44_1146 (reverse)

seq1  CAATTTG-TCTTTGATAAAGAAAAATTAGGTTCCCAGGGCATTGTGAAAT  49
      ||||||| ||||||||||||||||| ||||||||||||||||  ||||||
seq2  CAATTTGTTCTTTGATAAAGAAAAAATAGGTTCCCAGGGCAT--TGAAAT  48

seq1  TATTGTGGGTTGGGGTCAGAAATTTAAACTCGCAGATATTCAGAACAATT  99
      |  |||||| ||| ||||| |||||||||||||||||  |||| ||||||
seq2  TTATGTGGG-TGGAGTCAG-AATTTAAACTCGCAGATTATCAG-ACAATT  95

seq1  CTGGTTTAAATTCTTCTGATGAATTTATAACTTTACAATTTCTAAAGATT  149
       |||||||||||||||||||||| |||||||||||||| ||||||||| |
seq2  TTGGTTTAAATTCTTCTGATGAA-TTATAACTTTACAAATTCTAAAGAAT  144

seq1  TAATTAGCTTTGCAATGTTAAAGATTCAATTCTGTGTGGAGTGCACACTT  199
      ||||||||||||||||||||||||||| |||| |||||||||||||||||
seq2  TAATTAGCTTTGCAATGTTAAAGATTC-ATTC-GTGTGGAGTGCACACTT  192

seq1  TCAACAGGCAATACGAAATCACTGACAATCAACAATATAATTAAAGATTA  249
       || ||||||||||| |||||||||||||| || ||||||||||||||||
seq2  CCACCAGGCAATACGGAATCACTGACAATC-ACCATATAATTAAAGATTA  241

seq1  AACAAAATATTAAACAAATGTACTATGTGAAACATAATGTTAGGAAACTT  299
      | |||||||||||   ||||| ||||||| ||||||||||||||||||||
seq2  ACCAAAATATTAA--CAATGT-CTATGTG-AACATAATGTTAGGAAACTT  287

seq1  GCACATAGACATGTACAGATGGATCTTGAGGAATGGTTACATCTAGGTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATAGACATGTACAGATGGATCTTGAGGAATGGTTACATCTAGGTGA  337

seq1  TTAACATGTAGTACTTCACATAGATTTTTTTTTGTGGAAGAGCAACTTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATGTAGTACTTCACATAGATTTTTTTTTGTGGAAGAGCAACTTCA  387

seq1  GAATCTTTCAAAATTAAAATATATTATCAAGTACATTCAGAACGTTGCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTTCAAAATTAAAATATATTATCAAGTACATTCAGAACGTTGCAA  437

seq1  ATTAATGTCTTAAACTTATTTTTTCT-AAACTGGCATTTTATATTGTTTG  498
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATTAATGTCTTAAACTTATTTTTTCTAAAACTGGCATTTTATATTGTTTG  487

seq1  ATTACAGCTCAACACCCACCACATGGGCGCACACTCATCACCATTCTGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGCTCAACACCCACCACATGGGCGCACACTCATCACCATTCTGTG  537

seq1  AACAGACATAAGCTGCTTGGAGCTTTCGTCTTCCTGAAGGGTGTGTGAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACATAAGCTGCTTGGAGCTTTCGTCTTCCTGAAGGGTGTGTGAAC  587

seq1  ATATGTATGAACAATAAACAAGACCCATAAAAGATGGAACAGGGGCAGGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATGAACAATAAACAAGACCCATAAAAGATGGAACAGGGGCAGGT  637

seq1  CAGGCATTGGTACACATCCACAGATTCCAAAGACCAGATTCAGGCTAAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATTGGTACACATCCACAGATTCCAAAGACCAGATTCAGGCTAAAT  687

seq1  TCAGCCACTGAACCCAAGATGACAGGTGCTGATCATAACTCTTTCCCCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCACTGAACCCAAGATGACAGGTGCTGATCATAACTCTTTCCCCTT  737

seq1  CTCCTCCTTTCCTTAGTCTGCAGCATCCAGTTCTACAGGAAAGGTTCTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCTTTCCTTAGTCTGCAGCATCCAGTTCTACAGGAAAGGTTCTCA  787

seq1  GCTTCTGCAGGCCTGCTGTGGAAAGCGCAGCCCAGCAGCCAGGCTGCTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGCAGGCCTGCTGTGGAAAGCGCAGCCCAGCAGCCAGGCTGCTTC  837

seq1  ATGTTGGTTACCTGGTTTTGGCCTCAGCAAGAACTCTGACTCCAGGAGGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGTTACCTGGTTTTGGCCTCAGCAAGAACTCTGACTCCAGGAGGC  887

seq1  TCCACCTCAAAGCACCATGCATCAAGATGATTTTATAGGACCTGCAATGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCAAAGCACCATGCATCAAGATGATTTTATAGGACCTGCAATGA  937

seq1  TGCATCTTGCCTTTTCCTGTAGTTCTCGAATCACCGGATCAGAAGAAAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTTGCCTTTTCCTGTAGTTCTCGAATCACCGGATCAGAAGAAAGA  987

seq1  TACAGGAATAGCAAAGCTGTTAGAAATCACTGTGTCTGAAGATATGCTGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAATAGCAAAGCTGTTAGAAATCACTGTGTCTGAAGATATGCTGA  1037

seq1  AGGCAACCACACCAGAGCAAGCAGCCTGCAACC-ACAGCTTTGGTTGTTG  1097
      ||||||||||||||||||||||||||||||||| | ||||||||||||||
seq2  AGGCAACCACACCAGAGCAAGCAGCCTGCAACCAAGAGCTTTGGTTGTTG  1087

seq1  TTTCAAGCAAGAATTC  1113
      ||||||||||||||||
seq2  TTTCAAGCAAGAATTC  1103

seq1: chr10_111600304_111601410
seq2: B6Ng01-089I16.g_69_1163

seq1  GAATTCCACTAAATGAATGATCCACTGTGATCCTTGCCGGGTTTTGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTAAATGAATGATCCACTGTGATCCTTGCCGGGTTTTGCTGG  50

seq1  TCTCCTGGTGCAGGAGAAGCCTGCTGTGCATGAGTCCCCTACTGTAGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGGTGCAGGAGAAGCCTGCTGTGCATGAGTCCCCTACTGTAGTCC  100

seq1  AGGCCAGGGTTTATCACACCTCAGATTTGAGCTCTTGGTCTGGGAGGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGGGTTTATCACACCTCAGATTTGAGCTCTTGGTCTGGGAGGCTA  150

seq1  CACTTTAAAAAAAAAAAAAAGAAAGAAAGAAAGAAAAGAAAGAAAGCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTAAAAAAAAAAAAAAGAAAGAAAGAAAGAAAAGAAAGAAAGCCTT  200

seq1  TGGACTCCAGGTGGGTTTGTCTGCTAGTGTAGGGGTGTTTGTCCAGACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCCAGGTGGGTTTGTCTGCTAGTGTAGGGGTGTTTGTCCAGACTG  250

seq1  TAGAGGCAGCCAGAGGAGTGGAAGGATTAGAGTACAGATTCGGGCCCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGCAGCCAGAGGAGTGGAAGGATTAGAGTACAGATTCGGGCCCAGA  300

seq1  GGTGGAGTCAAAGTCCCTTTTATTACTGGGGAAGTTGGAGAGGGCCAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGTCAAAGTCCCTTTTATTACTGGGGAAGTTGGAGAGGGCCAGGA  350

seq1  GGCCTAGGGAACCAACTCCAGTTGCCTAGCAACCAGAGACTCTGGTCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAGGGAACCAACTCCAGTTGCCTAGCAACCAGAGACTCTGGTCTAG  400

seq1  ACTGTTGTGTTTTCTGGGACCTGCTCCTGAGTTTGCCAAGGGTAAGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGTGTTTTCTGGGACCTGCTCCTGAGTTTGCCAAGGGTAAGCTTT  450

seq1  CAGAAGGAAGTTCTTGGTGGAAGGAATCACCATGGTTTATACAGCTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGAAGTTCTTGGTGGAAGGAATCACCATGGTTTATACAGCTTCCA  500

seq1  GTCCTTCTATTTTCGATTTGGGGTGTAAGGAGCTAACACTATTAGGTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCTATTTTCGATTTGGGGTGTAAGGAGCTAACACTATTAGGTCAA  550

seq1  GTCAGCTTGCCTTGCTCCCTAGTGTGGCCCTGAGTCCTGGAAAAAGGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTTGCCTTGCTCCCTAGTGTGGCCCTGAGTCCTGGAAAAAGGAGC  600

seq1  TAGTAGATTCCTTTGGGAGCACTCCAGGTACTGTAAAGTAAGCTTTAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGATTCCTTTGGGAGCACTCCAGGTACTGTAAAGTAAGCTTTAAAT  650

seq1  TGAATTAGGAACGACTTTGTGTTCAGTTTCAGACCTTGGGTGGATTGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTAGGAACGACTTTGTGTTCAGTTTCAGACCTTGGGTGGATTGTCA  700

seq1  CCACGGACTCAAGGTGGACTCAGTCCCTGTCCCTCACGAATTTAAGTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGACTCAAGGTGGACTCAGTCCCTGTCCCTCACGAATTTAAGTACT  750

seq1  GAACTGTATTTATTAATCGCTTCCTTGTTTATGAACTGGATCAGATGTCT  800
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTA-TTATTAATCGCTTCCTTGTTTATGAACTGGATCAGATGTCT  799

seq1  TTCCTTTCATGTGTGTTCTGACTTTGCATGAACAAATTCAAAGCTCGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCATGTGTGTTCTGACTTTGCATGAACAAATTCAAAGCTCGGGA  849

seq1  TACACTTACCAGGAGTGAATAGCTGGAGTTGGAAGTGGTCCCTGTTAAGA  900
      |||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  TACACTTACCAGGAGTGAATAGCTGGAGTTGG-AGTGGTCCCTGTT-AGA  897

seq1  GACAAGGAGGGAATGAAGCCTTCGTGACTCAGTGGTTAAAGGCACCAAAG  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GACAAGGAGGGAATGAAGCCTTCGTGACTCAGTGGTTAAAGGCA-CAAAG  946

seq1  ACATTAATCAACAATAGTAAC-TACCTCCTAGCAACAGCTCTTGCTGATC  999
      ||||||||||||||||||||| ||||| ||||||||||||||||||||||
seq2  ACATTAATCAACAATAGTAACTTACCT-CTAGCAACAGCTCTTGCTGATC  995

seq1  AACACAATTTGGTGAAAATTATTCTGGTGCTGATTAAAGTAACCGCCTTC  1049
      ||||||||||||||||||||||||| ||||||| |||||||  || ||||
seq2  AACACAATTTGGTGAAAATTATTCT-GTGCTGA-TAAAGTA--CG-CTTC  1040

seq1  CCCCCCCCAACAAAGCACACGAAAATGTTGAGATACTAAATAAATACTAA  1099
      |||||||| || |||||||||| |  || ||||| || ||||||||||||
seq2  CCCCCCCC-ACCAAGCACACGAGATGGTGGAGAT-CT-AATAAATACTAA  1087

seq1  GCTAAATA  1107
      ||||||||
seq2  GCTAAATA  1095