BAC Information

Click to search

BAC

Clone NameB6Ng01-089J19
Chromosome7 (Build37)10 (Build37)
Map Location 20,587,147 - 20,587,90063,786,906 - 63,787,307
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneIrf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20
Downstream geneNlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980, EG381936, LOC100043559, LOC667311, LOC100043561, LOC667302, EG667292, LOC100043566, LOC100043569, EG436135
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089J19.bB6Ng01-089J19.g
ACCDH902146DH902147
length755114
definitionDH902146|Mus musculus domesticus DNA, BAC clone: B6Ng01-089J19, 5' end.DH902147|Mus musculus domesticus DNA, BAC clone: B6Ng01-089J19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(20,587,147 - 20,587,900)(63,786,906 - 63,787,307)
sequence
gaattctgaaaagattaaaggtggattgctctgtgtcctattctttgtca
ttcctgtgaccaagtgcaatatctgaacttcctctgatagacctagcggg
gaaacccccactccattcctgatttggcgtgcacccaagaatcacgaaca
gaacagaatgccttgatgtaattacatgaggtcgtttaattacggaactc
cagaccgatatgcatcccacacaggagataacggatgtcggccacaaggc
tcgaaagctagggggtttttatggggtaaggggcttaggggtgtggaatt
gagcacagcgacacactattggcttattcaaacatcagcagaaaaattac
atgtacgtgcagggtgtcagagttctgtgagttgttgactcagtttagat
agccctgttatgtcctcacattcccctttatcttatggtcaagatgttcc
caggaatgttttaactacggggcatacccaggtttgtttttctttttttc
tcagccccaggcagcctctaagctcacaaacaaccagcaatttctgagta
ctttatatgacttacagatcttgaaatttcatctttctttcacctcttgt
agttaatgactattttaattataataatggtgttgagtataagtatggcc
atggagaagaagatgctgaagatgacagggatgtaaaggatgatagtgtt
tataataatgaaggaaagttagtatgtgttttgctcttctaaataaaaat
aatta
tgagttcgaggcccgcctggtctacaaagtgagttccaggacagcctagg
atatacagagaaaccctgtcttgaaaaacaaaacaaaacaaaacaggtgt
gtgtatgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_20587147_20587900
seq2: B6Ng01-089J19.b_44_798 (reverse)

seq1  TAAATATTTATATTTAGAAGAGCAAAACACATACTAAC-TTCCTTCATTA  49
      ||| ||||| |||||||||||||||||||||||||||| |||||||||||
seq2  TAATTATTTTTATTTAGAAGAGCAAAACACATACTAACTTTCCTTCATTA  50

seq1  TTATAAACACTATCATCCTTTACATCCCTGTCATCTTCAGCATCTTCTTC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAACACTATCATCCTTTACATCCCTGTCATCTTCAGCATCTTCTTC  100

seq1  TCCATGGCCATACTTATACTCAACACCATTATTATAATTAAAATAGTCAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGCCATACTTATACTCAACACCATTATTATAATTAAAATAGTCAT  150

seq1  TAACTACAAGAGGTGAAAGAAAGATGAAATTTCAAGATCTGTAAGTCATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTACAAGAGGTGAAAGAAAGATGAAATTTCAAGATCTGTAAGTCATA  200

seq1  TAAAGTACTCAGAAATTGCTGGTTGTTTGTGAGCTTAGAGGCTGCCTGGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTACTCAGAAATTGCTGGTTGTTTGTGAGCTTAGAGGCTGCCTGGG  250

seq1  GCTGAGAAAAAAAGAAAAACAAACCTGGGTATGCCCCGTAGTTAAAACAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAAAAAAAGAAAAACAAACCTGGGTATGCCCCGTAGTTAAAACAT  300

seq1  TCCTGGGAACATCTTGACCATAAGATAAAGGGGAATGTGAGGACATAACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGAACATCTTGACCATAAGATAAAGGGGAATGTGAGGACATAACA  350

seq1  GGGCTATCTAAACTGAGTCAACAACTCACAGAACTCTGACACCCTGCACG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTATCTAAACTGAGTCAACAACTCACAGAACTCTGACACCCTGCACG  400

seq1  TACATGTAATTTTTCTGCTGATGTTTGAATAAGCCAATAGTGTGTCGCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTAATTTTTCTGCTGATGTTTGAATAAGCCAATAGTGTGTCGCTG  450

seq1  TGCTCAATTCCACACCCCTAAGCCCCTTACCCCATAAAAACCCCCTAGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAATTCCACACCCCTAAGCCCCTTACCCCATAAAAACCCCCTAGCT  500

seq1  TTCGAGCCTTGTGGCCGACATCCGTTATCTCCTGTGTGGGATGCATATCG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGCCTTGTGGCCGACATCCGTTATCTCCTGTGTGGGATGCATATCG  550

seq1  GTCTGGAGTTCCGTAATTAAACGACCTCATGTAATTACATCAAGGCATTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAGTTCCGTAATTAAACGACCTCATGTAATTACATCAAGGCATTC  600

seq1  TGTTCTGTTCGTGATTCTTGGGTGCACGCCAAATCAGGAATGGAGTGGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGTTCGTGATTCTTGGGTGCACGCCAAATCAGGAATGGAGTGGGG  650

seq1  GTTTCCCCGCTAGGTCTATCAGAGGAAGTTCAGATATTGCACTTGGTCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCCGCTAGGTCTATCAGAGGAAGTTCAGATATTGCACTTGGTCAC  700

seq1  AGGAATGACAAAGAATAGGACACAGAGCAATCCACCTTTAATCTTTTCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGACAAAGAATAGGACACAGAGCAATCCACCTTTAATCTTTTCAG  750

seq1  AATTC  754
      |||||
seq2  AATTC  755

seq1: chr10_63786906_63787307
seq2: B6Ng01-089J19.g_74_187 (reverse)

seq1  ACACACACATACACACACTACACAAATCTTAAAAAGTAAGCATACCAGAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATGTAGTGTGACAATTCTTGTCTAAATGTTAATTCTGTAAAATGACCTCC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TAAACATGATAGGTAGAGTAGATATGAATAAATCTAAGAAGGCAGCCTGT  150
                                                        
seq2  --------------------------------------------------  0

seq1  GTTGACACTGGTTACTCTAACTGTACCTTACTTTAATGCTTTAATGATAT  200
                                                        
seq2  --------------------------------------------------  0

seq1  GAAAAACTTCATAATGTTGTCTTGCAACTTTAAAACAAAGATTTTTTTTT  250
                                                        
seq2  --------------------------------------------------  0

seq1  TAAAAAACTGCTCATTCCTTTTTAAGTTTCTTTCTTTCTTTCCTTTTTTT  300
          | ||  | ||| |                    |   ||       
seq2  ----ACAC-ACACATAC-------------------ACACACC-------  19

seq1  TTTTTGTTTTTGTTTGTTTGTTTGTTTTTCGAGACAGGGTTTCTCTTTAT  350
          ||||||  |||||   |||||||||| ||||||||||||||| |||
seq2  ----TGTTTTGTTTTGT---TTTGTTTTTCAAGACAGGGTTTCTCTGTAT  62

seq1  AGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACT  400
      | ||  |||||||||||||||||||||||||||||||| |||||||||||
seq2  ATCCTAGGCTGTCCTGGAACTCACTTTGTAGACCAGGCGGGCCTCGAACT  112

seq1  CA  402
      ||
seq2  CA  114