BAC Information

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BAC

Clone NameB6Ng01-089K21
Chromosome10 (Build37)
Map Location 84,598,489 - 84,629,562
singlet/doubletdoublet
Overlap geneCry1
Upstream geneLOC432482, Nuak1, Ckap4, Tcp11l2, Polr3b, Rfx4, EG625690, Ric8b, Fhl4, AI597468, Mterfd3
Downstream geneEG666974, Btbd11, EG626858, LOC626878, LOC669723, LOC626940, Pwp1, Prdm4, Ascl4, D10Wsu52e, Bpil2, Fbxo7, Syn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089K21.bB6Ng01-089K21.g
ACCDH902196DH902197
length1,0761,106
definitionDH902196|Mus musculus domesticus DNA, BAC clone: B6Ng01-089K21, 5' end.DH902197|Mus musculus domesticus DNA, BAC clone: B6Ng01-089K21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,628,482 - 84,629,562)(84,598,489 - 84,599,614)
sequence
gaattccatacaaagtataacattggatatagtaaatatttctttcattt
gttttgtacctgtttctcagtattttcatacattttatgaccgtcatggt
tctgaatattgtttctctattttgaagaatgaacctaagtttgggtttgt
ctgattttttttttttcatgattagactagagtcctaggatttggaaaaa
atgtccctattaaaatggtcctcttgggactggagagatggctcagtggt
caagagcacctggagctcttgcagagaacccgggttcagttcccagtgct
ccatgggagctcacgctatctgtcactccagttccaggagacccagtgcc
cttttttgatcccctgaaaatcaggcatgcacatagtatacacacacaca
catgcagacacaccctcacacatacaagagaaaactactaccacagtggt
ctcctgtcacctcccctcagagtgtgtgacactgacgtgacttagtgtgg
tttgctttctctgatcggggtttactgtagcgcaccactgttgcccgtgt
cagtttgatgttttgctcttcccactcaagggtaaactttatatcctcca
aggtggggagggggtcggcagctttttacactgacttactctgtgacttc
atatttgtcatatttccatttgaattgggaataaagcttttggaagctct
gactagagaaggaaagtctattattagcttccttactctgatgagccttg
ggcttttgttttctgtcttccttaacctggattaagctcaagttttccag
ggctttgtagaaatcttcaggctaatgctgactctagcacccctgctttt
agagcagcctagggaattattttaagaaatgttcagttctgttgttgtga
acttggttagctatttttgttagagtatcttaattccattgtactgtcac
agttagtaaaagcatcatttggcatgaagtttagacattttgaagtgtta
aacttgagggatgtgccatttagtttagaaagtatgatgcttagatagtc
atgtttttcataacatttctctgcat
gaattccattcttcaggtactcagaatttaaaaattgtctatcttggctc
acaaataacagcctccatccctgggaagggatattcctatactataatta
agaagcaagccaggtggtagtggtgcacacctttgatcctggtactcagc
caggtctacagagcaggttccaggacagccagggttacacagagaaaccc
tgtctcagaaaaaccaacaaaacaaaatagaacaaaaagaaaaacaaaca
aaaaagaaaaaaattctatcaaactttcaaagaagacctaataccaatac
tcttcaaactatttcacaaaatagaaacataagaagcactacccaattca
ttctatgaagccacagttatgctgcatagtccctcttgtagatggaatag
tttctgtctaatcaggaacttgtcacaatttcctttcatagaggacttca
taagaaattttctatttctatcatgtctaatgttctaaacagatttttaa
aactggttttaaaaaacctttatataataatttaagatttaaaaaataat
aatgcagtatttcacttagtaaatgttcaacatttctttgcttacaagta
ttggatttccttaaaaataaataaaacgctcatgtccataaaaaagaatg
aaagaagcactcctactgacactttaattcataggcctttgtttttgttt
ttgttatgttgatactgtcatttgcagattggccgttttctaattgtgct
gagaacatgggtgataaaggctcaccatatttaggaagagttgccatgca
tgacactgtctacgcccttcttcatgaagccttgataatgttttgtaatg
tcactgacgtgtatatcctgagacagacacatgacaagttcatgccctat
gcctcatattacaataaaaggtcagcaacgcatctccttctgagatcggc
ttgtcatgtagttcagctgtttgacctgaagctcgagtgcacagtcatca
gtcctgctgacactgctgcactacacgcccgtgatgctaactccctgctg
tctccagctgctgactcttacgatccaatttatgaagacacagatctcac
ctcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_84628482_84629562
seq2: B6Ng01-089K21.b_44_1119 (reverse)

seq1  ATGCAGAG-AATGTTATTGAAAAACATGACTATACTAAGCATCATACTTT  49
      |||||||| ||||||| |||||||||||||||| ||||||||||||||||
seq2  ATGCAGAGAAATGTTA-TGAAAAACATGACTAT-CTAAGCATCATACTTT  48

seq1  CTAAACTAATGTGCACATCCCTCAAGTTTTACCACTTCAAAATGTCTTAA  99
      |||||||||   |||||||||||||| |||| |||||||||||||| |||
seq2  CTAAACTAAATGGCACATCCCTCAAG-TTTAACACTTCAAAATGTC-TAA  96

seq1  ACTTCAATGCCAAATGATGCCTTTTACTAACTTGTTGACAGTACAATGG-  148
      ||||| ||||||||||||| ||||||||||||   |||||||||||||| 
seq2  ACTTC-ATGCCAAATGATG-CTTTTACTAACT--GTGACAGTACAATGGA  142

seq1  ATTAAGATACTCTAACAAAAATAGCTAA-CAAGTTCACAAACAACAGAAC  197
      |||||||||||||||||||||||||||| ||||||||| |||||||||||
seq2  ATTAAGATACTCTAACAAAAATAGCTAACCAAGTTCAC-AACAACAGAAC  191

seq1  TGAACATTTCTTAAAATAATTCCCTAGGCTGCTCTAAAAGCA-GGGTGCT  246
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGAACATTTCTTAAAATAATTCCCTAGGCTGCTCTAAAAGCAGGGGTGCT  241

seq1  AGAGTCAGCATTAGCCTGAAGATTTCTACAAAGCCCTGGAAAACTTGAGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAGCATTAGCCTGAAGATTTCTACAAAGCCCTGGAAAACTTGAGC  291

seq1  TTAATCCAGGTTAAGGAAGACAGAAAACAAAAGCCCAAGGCTCATCAGAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCAGGTTAAGGAAGACAGAAAACAAAAGCCCAAGGCTCATCAGAG  341

seq1  TAAGGAAGCTAATAATAGACTTTCCTTCTCTAGTCAGAGCTTCCAAAAGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAGCTAATAATAGACTTTCCTTCTCTAGTCAGAGCTTCCAAAAGC  391

seq1  TTTATTCCCAATTCAAATGGAAATATGACAAATATGAAGTCACAGAGTAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCCCAATTCAAATGGAAATATGACAAATATGAAGTCACAGAGTAA  441

seq1  GTCAGTGTAAAAAGCTGCCGACCCCCTCCCCACCTTGGAGGATATAAAGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGTAAAAAGCTGCCGACCCCCTCCCCACCTTGGAGGATATAAAGT  491

seq1  TTACCCTTGAGTGGGAAGAGCAAAACATCAAACTGACACGGGCAACAGTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTTGAGTGGGAAGAGCAAAACATCAAACTGACACGGGCAACAGTG  541

seq1  GTGCGCTACAGTAAACCCCGATCAGAGAAAGCAAACCACACTAAGTCACG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGCTACAGTAAACCCCGATCAGAGAAAGCAAACCACACTAAGTCACG  591

seq1  TCAGTGTCACACACTCTGAGGGGAGGTGACAGGAGACCACTGTGGTAGTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCACACACTCTGAGGGGAGGTGACAGGAGACCACTGTGGTAGTA  641

seq1  GTTTTCTCTTGTATGTGTGAGGGTGTGTCTGCATGTGTGTGTGTGTATAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTCTTGTATGTGTGAGGGTGTGTCTGCATGTGTGTGTGTGTATAC  691

seq1  TATGTGCATGCCTGATTTTCAGGGGATCAAAAAAGGGCACTGGGTCTCCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCATGCCTGATTTTCAGGGGATCAAAAAAGGGCACTGGGTCTCCT  741

seq1  GGAACTGGAGTGACAGATAGCGTGAGCTCCCATGGAGCACTGGGAACTGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGGAGTGACAGATAGCGTGAGCTCCCATGGAGCACTGGGAACTGA  791

seq1  ACCCGGGTTCTCTGCAAGAGCTCCAGGTGCTCTTGACCACTGAGCCATCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGGGTTCTCTGCAAGAGCTCCAGGTGCTCTTGACCACTGAGCCATCT  841

seq1  CTCCAGTCCCAAGAGGACCATTTTAATAGGGACATTTTTTCCAAATCCTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTCCCAAGAGGACCATTTTAATAGGGACATTTTTTCCAAATCCTA  891

seq1  GGACTCTAGTCTAATCATGAAAAAAAAAAAATCAGACAAACCCAAACTTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTAGTCTAATCATGAAAAAAAAAAAATCAGACAAACCCAAACTTA  941

seq1  GGTTCATTCTTCAAAATAGAGAAACAATATTCAGAACCATGACGGTCATA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATTCTTCAAAATAGAGAAACAATATTCAGAACCATGACGGTCATA  991

seq1  AAATGTATGAAAATACTGAGAAACAGGTACAAAACAAATGAAAGAAATAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATGAAAATACTGAGAAACAGGTACAAAACAAATGAAAGAAATAT  1041

seq1  TTACTATATCCAATGTTATACTTTGTATGGAATTC  1081
      |||||||||||||||||||||||||||||||||||
seq2  TTACTATATCCAATGTTATACTTTGTATGGAATTC  1076

seq1: chr10_84598489_84599614
seq2: B6Ng01-089K21.g_68_1173

seq1  GAATTCCATTCTTCAGGTACTCAGAATTTAAAAATTGTCTATCTTGGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCTTCAGGTACTCAGAATTTAAAAATTGTCTATCTTGGCTC  50

seq1  ACAAATAACAGCCTCCATCCCTGGGAAGGGATATTCCTATACTATAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAACAGCCTCCATCCCTGGGAAGGGATATTCCTATACTATAATTA  100

seq1  AGAAGCAAGCCAGGTGGTAGTGGTGCACACCTTTGATCCTGGTACTCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAAGCCAGGTGGTAGTGGTGCACACCTTTGATCCTGGTACTCAGC  150

seq1  CAGGTCTACAGAGCAGGTTCCAGGACAGCCAGGGTTACACAGAGAAACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTACAGAGCAGGTTCCAGGACAGCCAGGGTTACACAGAGAAACCC  200

seq1  TGTCTCAGAAAAACCAACAAAACAAAATAGAACAAAAAGAAAAACAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAGAAAAACCAACAAAACAAAATAGAACAAAAAGAAAAACAAACA  250

seq1  AAAAAGAAAAAAATTCTATCAAACTTTCAAAGAAGACCTAATACCAATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAAAAATTCTATCAAACTTTCAAAGAAGACCTAATACCAATAC  300

seq1  TCTTCAAACTATTTCACAAAATAGAAACATAAGAAGCACTACCCAATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAACTATTTCACAAAATAGAAACATAAGAAGCACTACCCAATTCA  350

seq1  TTCTATGAAGCCACAGTTATGCTGCATAGTCCCTCTTGTAGATGGAATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGAAGCCACAGTTATGCTGCATAGTCCCTCTTGTAGATGGAATAG  400

seq1  TTTCTGTCTAATCAGGAACTTGTCACAATTTCCTTTCATAGAGGACTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCTAATCAGGAACTTGTCACAATTTCCTTTCATAGAGGACTTCA  450

seq1  TAAGAAATTTTCTATTTCTATCATGTCTAATGTTCTAAACAGATTTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAATTTTCTATTTCTATCATGTCTAATGTTCTAAACAGATTTTTAA  500

seq1  AACTGGTTTTAAAAAACCTTTATATAATAATTTAAGATTTAAAAAATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTTTTAAAAAACCTTTATATAATAATTTAAGATTTAAAAAATAAT  550

seq1  AATGCAGTATTTCACTTAGTAAATGTTCAACATTTCTTTGCTTACAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGTATTTCACTTAGTAAATGTTCAACATTTCTTTGCTTACAAGTA  600

seq1  TTGGATTTCCTTAAAAATAAATAAAACGCTCATGTCCATAAAAAAGAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTTCCTTAAAAATAAATAAAACGCTCATGTCCATAAAAAAGAATG  650

seq1  AAAGAAGCACTCCTACTGACACTTTAATTCATAGGCCTTTGTTTTTGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGCACTCCTACTGACACTTTAATTCATAGGCCTTTGTTTTTGTTT  700

seq1  TTGTTATGTTGATACTGTCATTTGCAGATTGGCCGTTTTCTAATTGTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATGTTGATACTGTCATTTGCAGATTGGCCGTTTTCTAATTGTGCT  750

seq1  GAGAACATGGGTGAT-AAGGCTCACCATATTTAGGAAGAGTTGCCATGCA  799
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAGAACATGGGTGATAAAGGCTCACCATATTTAGGAAGAGTTGCCATGCA  800

seq1  TGACACTGTCTACG-CCTTC-TCATGAAGCCTTGATAATGTTTTGTAATG  847
      |||||||||||||| ||||| |||||||||||||||||||||||||||||
seq2  TGACACTGTCTACGCCCTTCTTCATGAAGCCTTGATAATGTTTTGTAATG  850

seq1  TCACTGACGTGTATATCCTGAGACAGACACATGACAAGTTCATGCCCTAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGACGTGTATATCCTGAGACAGACACATGACAAGTTCATGCCCTAT  900

seq1  GCCTCATATTACAATAAAAGGTCAGCAAACGCATCTCCTTCTGAGATCGG  947
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCCTCATATTACAATAAAAGGTCAGC-AACGCATCTCCTTCTGAGATCGG  949

seq1  GCCTTGTCATGTAGTTCAGGCTGGTTTGACCCTGAGAGCCTTCCGAGTGC  997
        |||||||||||||||| ||| |||||| ||||| |||    |||||||
seq2  --CTTGTCATGTAGTTCA-GCT-GTTTGA-CCTGA-AGC---TCGAGTGC  990

seq1  ACAGTCATCAGTCCCTGCTGACCACCTGCTGCACTTACACGCCCCGTGAT  1047
      |||||||||||| |||||||||   ||||||||| |||||| ||||||||
seq2  ACAGTCATCAGT-CCTGCTGAC--ACTGCTGCAC-TACACG-CCCGTGAT  1035

seq1  GCTTTACTCACTGCTGTCTCACAGCTGCTGACATACTACAGATACAAATA  1097
      || | |||| |||||||||| ||||||||||| |  ||| ||| |||   
seq2  GC-TAACTCCCTGCTGTCTC-CAGCTGCTGAC-TCTTAC-GATCCAA--T  1079

seq1  TTATGAAGACACAGGATCTACACCACAGG  1126
      ||||||||||||| ||||| |||| ||||
seq2  TTATGAAGACACA-GATCT-CACCTCAGG  1106