BAC Information

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BAC

Clone NameB6Ng01-089N08
Chromosome10 (Build37)
Map Location 118,174,681 - 118,288,381
singlet/doubletdoublet
Overlap geneLOC100042850
Upstream geneSlc35e3, Nup107, Rap1b, Mdm1, Il22, LOC672934, LOC668180, LOC668186, LOC668187, LOC668191, EG668193, Iltifb, LOC668198, EG668203, EG668205, EG668209, EG668213, LOC668216, Ifng, LOC100043478
Downstream geneDyrk2, LOC668223, LOC100042861, LOC674417, Cand1, Grip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089N08.bB6Ng01-089N08.g
ACCDH902306DH902307
length1,2021,059
definitionDH902306|Mus musculus domesticus DNA, BAC clone: B6Ng01-089N08, 5' end.DH902307|Mus musculus domesticus DNA, BAC clone: B6Ng01-089N08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,174,681 - 118,175,887)(118,287,318 - 118,288,381)
sequence
gaattcaactagtatgctccatcatctagttaacattctctcagttgaca
cgagtgtgtgaagctttgctcctgtggcaaggacttcaccagcccggagt
cactgagggaaatggaagtatcagacacttgcttgtccttggagccaaat
aactgggaagggaaaaaaaaaagaactcatcagaacccgtaagatcacag
tcttcttctcgaagaactcaggaagagaaccagcctagagcatcgcaggt
gtacacaggtacctgcctatcttacacaatggtcagagaaggcatctctg
ggaagacaatggaactcaccctgatctggagaggtacatgccaatctcat
gaactggtagacatcgaggtttctgggctagagctggaaagagcaaaggc
ccctccctaagcagaaacaacagaaacaacgtgacatgcttcaagcacca
tgaggagaagacagatggagcaaagacttcaaaactacataaaacaaaaa
aaattcaagagaagtaacaagcaaaacaggcaaatccatagtcattgttg
agacttgacactgttggagactttccatagaacctagtgatttaaagcag
caagcacgcatgctgggtttcccgaggggtagttggcatagctagctatg
tggctctagcctagggccccagtacactgccttccacataacaaggagta
ctgtcaccattgacatcagaggcctgtctcagtgtatgagggtccccact
ctcgcaccctcagtcctcaccagctggaagtaaaaacttacccacgccct
ggtcagtgggccacttgggtgtctgcagactctgctcactggtccccaag
acgggtcaatctgaaagagagagaaagtaaaaatgagtctttagaaacta
cacgttgccactttttcgcagattctttttcattaaaaccaagtcactag
tccagttcacactcagaggggaggaaaggaaatgtagcgagaacttgtag
catgacttaatcatgaatagtcatggtgaatctctaaagatgcccaggca
ttgatctcaagaattgccataaggaggtcggcttgcaaagaaggcagggg
gcttgcctgcgaacagacactgaagtaccaaacataaatggaattagtgt
taggcactggataaacacgacatatgcttctctctcatacacacatccac
at
gaattcagatggctacagagctaagggtcatttttgagagaagagaattg
ttctcacagaggtgcgtattgtttgttcatcatccaatgtgtgaggggct
acagtgtaattttggacctaggcagagtgagggagggaagcatagctctt
tggaaaggtgtgtatcatcatggcagggtttcctcagctacactgtgtcc
caggcatttcacagtctctgtgtggctggaaggcatgaagttggccaaga
tgatactgccctgaagcagacactggcatttccctctccccagaaagatc
tcacttcactgtaccgtctcctccactgtttcctcctatctggcctcctg
ggcacacgctggcacacagcaaaggggtctctggggattgcattttagtc
tcgaaggtgggtgattgacggataatcgttagaatgttagctgtgaattg
cataaagtgcaggaaagcaagtgatgttgggaagaaggataaaagactgg
gaggaaggtcaagctcctctgggagaaggatgctgtatggcactggttcc
caacctttccagtgctgtgaccctttgctacagtccctcatgctgtggtg
accccagccataaaactactttgttgttacttcataattgtactatggtt
aggaattgtaatataaatatctgatatgcacaatacctgatatgtgacct
caaatggggtcacaacccacaggttgagaacctcatgtgcctcttgagcc
ctacatgatctaaaacaagtaggggtagaggagagaccagtgtgggtagg
gctacacagaccgtgctgaggacccagggctttttttttttttgtgatta
taccaaaaggcaattggaataattaacatagccgttgaaacaagccattc
tgggttttcatgcagaaagcttagaagagacccttggtgcaagaaagtga
tgacgattcacgcatgcagagcatctgtgtgtctggcttcatgatgagct
tgattggatgaaatgttttcagacacaggtgtccttgcaactgaggtgag
gtagggaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_118174681_118175887
seq2: B6Ng01-089N08.b_47_1248

seq1  GAATTCAACTAGTATGCTCCATCATCTAGTTAACATTCTCTCAGTTGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTAGTATGCTCCATCATCTAGTTAACATTCTCTCAGTTGACA  50

seq1  CGAGTGTGTGAAGCTTTGCTCCTGTGGCAAGGACTTCACCAGCCCGGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTGTGTGAAGCTTTGCTCCTGTGGCAAGGACTTCACCAGCCCGGAGT  100

seq1  CACTGAGGGAAATGGAAGTATCAGACACTTGCTTGTCCTTGGAGCCAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGGGAAATGGAAGTATCAGACACTTGCTTGTCCTTGGAGCCAAAT  150

seq1  AACTGGGAAGGGAAAAAAAAAAGAACTCATCAGAACCCGTAAGATCACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGAAGGGAAAAAAAAAAGAACTCATCAGAACCCGTAAGATCACAG  200

seq1  TCTTCTTCTCGAAGAACTCAGGAAGAGAACCAGCCTAGAGCATCGCAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTCGAAGAACTCAGGAAGAGAACCAGCCTAGAGCATCGCAGGT  250

seq1  GTACACAGGTACCTGCCTATCTTACACAATGGTCAGAGAAGGCATCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACAGGTACCTGCCTATCTTACACAATGGTCAGAGAAGGCATCTCTG  300

seq1  GGAAGACAATGGAACTCACCCTGATCTGGAGAGGTACATGCCAATCTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACAATGGAACTCACCCTGATCTGGAGAGGTACATGCCAATCTCAT  350

seq1  GAACTGGTAGACATCGAGGTTTCTGGGCTAGAGCTGGAAAGAGCAAAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGTAGACATCGAGGTTTCTGGGCTAGAGCTGGAAAGAGCAAAGGC  400

seq1  CCCTCCCTAAGCAGAAACAACAGAAACAACGTGACATGCTTCAAGCACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCTAAGCAGAAACAACAGAAACAACGTGACATGCTTCAAGCACCA  450

seq1  TGAGGAGAAGACAGATGGAGCAAAGACTTCAAAACTACATAAAACAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGAAGACAGATGGAGCAAAGACTTCAAAACTACATAAAACAAAAA  500

seq1  AAATTCAAGAGAAGTAACAAGCAAAACAGGCAAATCCATAGTCATTGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAAGAGAAGTAACAAGCAAAACAGGCAAATCCATAGTCATTGTTG  550

seq1  AGACTTGACACTGTTGGAGACTTTCCATAGAACCTAGTGATTTAAAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGACACTGTTGGAGACTTTCCATAGAACCTAGTGATTTAAAGCAG  600

seq1  CAAGCACGCATGCTGGGTTTCCCGAGGGGTAGTTGGCATAGCTAGCTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACGCATGCTGGGTTTCCCGAGGGGTAGTTGGCATAGCTAGCTATG  650

seq1  TGGCTCTAGCCTAGGGCCCCAGTACACTGCCTTCCACATAACAAGGAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTAGCCTAGGGCCCCAGTACACTGCCTTCCACATAACAAGGAGTA  700

seq1  CTGTCACCATTGACATCAGAGGCCTGTCTCAGTGTATGAGGGTCCCCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACCATTGACATCAGAGGCCTGTCTCAGTGTATGAGGGTCCCCACT  750

seq1  CTCGCACCCTCAGTCCTCACCAGCTGGAAGTAAAAACTTACCCACGCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCACCCTCAGTCCTCACCAGCTGGAAGTAAAAACTTACCCACGCCCT  800

seq1  GGTCAGTGGGCCACTTGGGTGTCTGCAGACTCTGCTCACTGGTCCCCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGTGGGCCACTTGGGTGTCTGCAGACTCTGCTCACTGGTCCCCAAG  850

seq1  ACGGGTCAATCTGAAAGAGAGAGAAAGTAAAAATGAGTCTTTAGAAACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGTCAATCTGAAAGAGAGAGAAAGTAAAAATGAGTCTTTAGAAACTA  900

seq1  CACGTTGCCAC-TTTTCGCAGATTC-TTTTCATTAAAACCAAGTCACTAA  948
      ||||||||||| ||||||||||||| |||||||||||||||||||||| |
seq2  CACGTTGCCACTTTTTCGCAGATTCTTTTTCATTAAAACCAAGTCACT-A  949

seq1  GTCCAGCTCACACTCAGA-GGGAGGAAAGGAAATGTAGCGAAGAACCTGT  997
      |||||| ||||||||||| ||||||||||||||||||||| ||||| |||
seq2  GTCCAGTTCACACTCAGAGGGGAGGAAAGGAAATGTAGCG-AGAACTTGT  998

seq1  AGCCATGACTTAAAATCATG-ATAGTCAT-GTGAATCTCTAAAGATGCCC  1045
      || ||||||||  ||||||| |||||||| ||||||||||||||||||||
seq2  AG-CATGACTT--AATCATGAATAGTCATGGTGAATCTCTAAAGATGCCC  1045

seq1  AGGCAATGATCTCAAG-ACTGCCATAGGAGGGTCGGCTTGCAAAGAAGGG  1094
      ||||| |||||||||| | ||||||| |  ||||||||||||||||| ||
seq2  AGGCATTGATCTCAAGAATTGCCATAAGGAGGTCGGCTTGCAAAGAA-GG  1094

seq1  CAGGGGGC-TGGCTGCAGACAGACACTGGAGGTCACCAACATAAATGGTA  1143
      |||||||| || ||||  ||||||||| || ||  | ||||||||||| |
seq2  CAGGGGGCTTGCCTGCGAACAGACACT-GAAGTACCAAACATAAATGGAA  1143

seq1  TTAGTTGTTAGGGCACTGGATAAAACACACACACACATACTCTCTCTCTC  1193
      |||| ||||| ||||||||||||   ||||  ||| || || ||||||||
seq2  TTAG-TGTTA-GGCACTGGATAA---ACAC-GACATATGCT-TCTCTCTC  1186

seq1  ATACACACA--CACAT  1207
      |||||||||  |||||
seq2  ATACACACATCCACAT  1202

seq1: chr10_118287318_118288381
seq2: B6Ng01-089N08.g_70_1128 (reverse)

seq1  ATCCCCTACCTCACCTCAGTTTGCAAGGACAACCTGTGGTCTTGAAACAT  50
      || |||||||||||||||| |||||||||| |||||| ||||  ||||| 
seq2  ATTCCCTACCTCACCTCAG-TTGCAAGGAC-ACCTGT-GTCTGAAAACA-  46

seq1  TTTCATTCCAATCAAGCTCATCATAGAAGCCAGACACACAAGATGCTCTG  100
      ||||| |||||||||||||||||| |||||||||||||| ||||||||||
seq2  TTTCA-TCCAATCAAGCTCATCAT-GAAGCCAGACACAC-AGATGCTCTG  93

seq1  CCTGCGTGAATCGTCATCACTTTCTTGCA-CAAGGGTCTCTTCTAAGCTT  149
      | ||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CATGCGTGAATCGTCATCACTTTCTTGCACCAAGGGTCTCTTCTAAGCTT  143

seq1  TCTGCATGAAAACCCAGAATGGC-TGTTTCAACGGCTATGTTAATTATTC  198
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTGCATGAAAACCCAGAATGGCTTGTTTCAACGGCTATGTTAATTATTC  193

seq1  CAATTGCCTTTTGGTATAATCACAAAAAAAAAAAAAGCCCTGGGTCCTCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGCCTTTTGGTATAATCACAAAAAAAAAAAAAGCCCTGGGTCCTCA  243

seq1  GCACGGTCTGTGTAGCCCTACCCACACTGGTCTCTCCTCTACCCCTACTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGGTCTGTGTAGCCCTACCCACACTGGTCTCTCCTCTACCCCTACTT  293

seq1  GTTTTAGATCATGTAGGGCTCAAGAGGCACATGAGGTTCTCAACCTGTGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGATCATGTAGGGCTCAAGAGGCACATGAGGTTCTCAACCTGTGG  343

seq1  GTTGTGACCCCATTTGAGGTCACATATCAGGTATTGTGCATATCAGATAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGACCCCATTTGAGGTCACATATCAGGTATTGTGCATATCAGATAT  393

seq1  TTATATTACAATTCCTAACCATAGTACAATTATGAAGTAACAACAAAGTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTACAATTCCTAACCATAGTACAATTATGAAGTAACAACAAAGTA  443

seq1  GTTTTATGGCTGGGGTCACCACAGCATGAGGGACTGTAGCAAAGGGTCAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATGGCTGGGGTCACCACAGCATGAGGGACTGTAGCAAAGGGTCAC  493

seq1  AGCACTGGAAAGGTTGGGAACCAGTGCCATACAGCATCCTTCTCCCAGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGAAAGGTTGGGAACCAGTGCCATACAGCATCCTTCTCCCAGAG  543

seq1  GAGCTTGACCTTCCTCCCAGTCTTTTATCCTTCTTCCCAACATCACTTGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGACCTTCCTCCCAGTCTTTTATCCTTCTTCCCAACATCACTTGC  593

seq1  TTTCCTGCACTTTATGCAATTCACAGCTAACATTCTAACGATTATCCGTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGCACTTTATGCAATTCACAGCTAACATTCTAACGATTATCCGTC  643

seq1  AATCACCCACCTTCGAGACTAAAATGCAATCCCCAGAGACCCCTTTGCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACCCACCTTCGAGACTAAAATGCAATCCCCAGAGACCCCTTTGCTG  693

seq1  TGTGCCAGCGTGTGCCCAGGAGGCCAGATAGGAGGAAACAGTGGAGGAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCAGCGTGTGCCCAGGAGGCCAGATAGGAGGAAACAGTGGAGGAGA  743

seq1  CGGTACAGTGAAGTGAGATCTTTCTGGGGAGAGGGAAATGCCAGTGTCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTACAGTGAAGTGAGATCTTTCTGGGGAGAGGGAAATGCCAGTGTCTG  793

seq1  CTTCAGGGCAGTATCATCTTGGCCAACTTCATGCCTTCCAGCCACACAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGGCAGTATCATCTTGGCCAACTTCATGCCTTCCAGCCACACAGA  843

seq1  GACTGTGAAATGCCTGGGACACAGTGTAGCTGAGGAAACCCTGCCATGAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGAAATGCCTGGGACACAGTGTAGCTGAGGAAACCCTGCCATGAT  893

seq1  GATACACACCTTTCCAAAGAGCTATGCTTCCCTCCCTCACTCTGCCTAGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACACACCTTTCCAAAGAGCTATGCTTCCCTCCCTCACTCTGCCTAGG  943

seq1  TCCAAAATTACACTGTAGCCCCTCACACATTGGATGATGAACAAACAATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAATTACACTGTAGCCCCTCACACATTGGATGATGAACAAACAATA  993

seq1  CGCACCTCTGTGAGAACAATTCTCTTCTCTCAAAAATGACCCTTAGCTCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACCTCTGTGAGAACAATTCTCTTCTCTCAAAAATGACCCTTAGCTCT  1043

seq1  GTAGCCATCTGAATTC  1064
      ||||||||||||||||
seq2  GTAGCCATCTGAATTC  1059