BAC Information

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BAC

Clone NameB6Ng01-089O20
Chromosome10 (Build37)
Map Location 109,917,604 - 110,109,861
singlet/doubletdoublet
Overlap geneLOC667855, 9230102K24Rik, LOC100042518
Upstream geneNav3, LOC100042497, LOC100042502, LOC100042506, LOC100042510
Downstream geneE2f7, Csrp2, Zdhhc17, EG432502, LOC667904, Osbpl8, Bbs10, Nap1l1, EG382421, Phlda1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089O20.bB6Ng01-089O20.g
ACCDH902373DH902374
length1,1161,050
definitionDH902373|Mus musculus domesticus DNA, BAC clone: B6Ng01-089O20, 5' end.DH902374|Mus musculus domesticus DNA, BAC clone: B6Ng01-089O20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,917,604 - 109,918,722)(110,108,810 - 110,109,861)
sequence
gaattccctagggcagtaaataattgaagattaagaaaattcctggttcc
ttttttgcccatggcagtcatcttccagtaacgtgccaaatgatcaacag
aaagggaaagaggatgaccactcactgtatgttctctaggccttttagca
aacgtggagttgttcctttgaccacatacataaggatctacaagaggagt
gaaattgtagacatcaagagaattggcattgttcaatgcagaagagtcta
caatgtcacccaccatgccatgggcatgattataaacaaacaagttaagg
gtaagattctggttcaatgtgtggattgagcacatcaagcacttaaaagg
cagagacagcttactgaagcctggatgaagaagaacaatcagaagaaaaa
ggaagccaaagagaagggcaccggggctcagctgaagcgccagcctgtgc
cacccagagaagcacactttgtgaggattcatggagaggaacctgagctg
ctggagtccattccatacgaattcatggcctaatgtacaaaaaagaaata
aaggacctggactgcagtgttttaaaaagaaaaacgaaaaggaagaaaga
agaaagttcttgatgattactaaaagaataaaataaaacaacaggaatga
gcacatagcttttaagaaccactctagataataatgatctcaagtctcca
agcaaaggatacagaccaacagattatattttttaaaaaataattgaacc
catctatatgttgcctacaagaaacccaccacactggtcaacaaaatgca
gctttagggcaaagaatgagaaaaaaaaaatcccaagataatgggactcg
aaatcaagtaatgtaccaattataattcctgacaaatagacttcaacaca
aacctaccagaaaggttaaaacagtgactacatattgattaaactttaaa
catatatacactgaaggatagtgcacccaatttcataaaaataagcagta
ctagatgttaaagcacgaatggatctcaacaggtggaagtaggtgacttt
aatacctttttctcgtgaaaaaaaaaaaatccaacaaagaaaaatcaagt
tacaacattttagatc
gaattccaggacagtcagggcgggcgatacagagaaaccctgtcttgaaa
aaacaaaaaacaaaacaaaaaagatacagagactatcataaataatggca
atgaatcataaatagcttattgttgaaaccatctgttgtgagataggtag
taaaattacagagtccttctttcttctttattccaccatggcaactttgg
atttgatttaaaaacaatgaagaattattgatcaccttcatacaggagaa
aggatcagatttaaattatccacaatacatgttagaaagagtaaggagag
tgtgtgtgaggtactaagggtagactctagaagatcatttaagaagttat
gagaaaaattgatgccaaaaaaagaggaaaaaaaacccaccctaagaagg
atgacaattgaatggttgcttctgtaaagagattggaaaggacatggaca
tagctatcgactgcctggcttcttgagggactggttagctgggtggtggt
agtaataggtgagacacagcaagcagaaggagattgctgagagaaagggg
aagcataaacagatgaactaaatgagcatagcatgtcaggacacaaagtt
cttagtaaactggataaaagagtcagtagcttggagtagagatttaaaaa
tgtggaggaaaaaaaattccacagtgaatctgagacaccgaagaagaatc
aatcagaaatgctgagagagagagagagagagagagagagagagagagag
agagagagagaatgaacagcctccccatagaaagcattaacagacaagac
agagaacttcgtgggttggaggatgcagttcaaatcagtaggcgcgttca
gcccacatatacataaaaatgcatgaacttctgagatatgttcaggaaga
ccaaattaagattccacatggttaggggattgatgacaccacatgctact
gcaaaaatactttcagaattctatgcatgggaggtagaagaagcctgttt
cattcacagagcatgggacaagtaatctcatgagagaaattggcgaacca

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_109917604_109918722
seq2: B6Ng01-089O20.b_49_1164

seq1  GAATTCCCTAGGGCAGTAAATAATTGAAGATTAAGAAAATTCCTGGTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAGGGCAGTAAATAATTGAAGATTAAGAAAATTCCTGGTTCC  50

seq1  TTTTTTGCCCATGGCAGTCATCTTCCAGTAACGTGCCAAATGATCAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGCCCATGGCAGTCATCTTCCAGTAACGTGCCAAATGATCAACAG  100

seq1  AAAGGGAAAGAGGATGACCACTCACTGTATGTTCTCTAGGCCTTTTAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAAAGAGGATGACCACTCACTGTATGTTCTCTAGGCCTTTTAGCA  150

seq1  AACGTGGAGTTGTTCCTTTGACCACATACATAAGGATCTACAAGAGGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGGAGTTGTTCCTTTGACCACATACATAAGGATCTACAAGAGGAGT  200

seq1  GAAATTGTAGACATCAAGAGAATTGGCATTGTTCAATGCAGAAGAGTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGTAGACATCAAGAGAATTGGCATTGTTCAATGCAGAAGAGTCTA  250

seq1  CAATGTCACCCACCATGCCATGGGCATGATTATAAACAAACAAGTTAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCACCCACCATGCCATGGGCATGATTATAAACAAACAAGTTAAGG  300

seq1  GTAAGATTCTGGTTCAATGTGTGGATTGAGCACATCAAGCACTTAAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATTCTGGTTCAATGTGTGGATTGAGCACATCAAGCACTTAAAAGG  350

seq1  CAGAGACAGCTTACTGAAGCCTGGATGAAGAAGAACAATCAGAAGAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACAGCTTACTGAAGCCTGGATGAAGAAGAACAATCAGAAGAAAAA  400

seq1  GGAAGCCAAAGAGAAGGGCACCGGGGCTCAGCTGAAGCGCCAGCCTGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCAAAGAGAAGGGCACCGGGGCTCAGCTGAAGCGCCAGCCTGTGC  450

seq1  CACCCAGAGAAGCACACTTTGTGAGGATTCATGGAGAGGAACCTGAGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGAGAAGCACACTTTGTGAGGATTCATGGAGAGGAACCTGAGCTG  500

seq1  CTGGAGTCCATTCCATACGAATTCATGGCCTAATGTACAAAAAAGAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTCCATTCCATACGAATTCATGGCCTAATGTACAAAAAAGAAATA  550

seq1  AAGGACCTGGACTGCAGTGTTTTAAAAAGAAAAACGAAAAGGAAGAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCTGGACTGCAGTGTTTTAAAAAGAAAAACGAAAAGGAAGAAAGA  600

seq1  AGAAAGTTCTTGATGATTACTAAAAGAATAAAATAAAACAACAGGAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTTCTTGATGATTACTAAAAGAATAAAATAAAACAACAGGAATGA  650

seq1  GCACATAGCTTTTAAGAACCACTCTAGATAATAATGATCTCAAGTCTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATAGCTTTTAAGAACCACTCTAGATAATAATGATCTCAAGTCTCCA  700

seq1  AGCAAAGGATACAGACCAACAGATTATATTTTTTAAAAAATAATTGAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGGATACAGACCAACAGATTATATTTTTTAAAAAATAATTGAACC  750

seq1  CATCTATATGTTGCCTACAAGAAACCCACCACACTGGTCAACAAAATGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATATGTTGCCTACAAGAAACCCACCACACTGGTCAACAAAATGCA  800

seq1  GCTTTAGGGCAAAGAATGAGAAAAAAAAAATCCCAAGATAATGGGACTCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAGGGCAAAGAATGAGAAAAAAAAAATCCCAAGATAATGGGACTCG  850

seq1  AAATCAAGTAATGTACCAATTATAATTCCTGACAAATAGACTTCAACACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAGTAATGTACCAATTATAATTCCTGACAAATAGACTTCAACACA  900

seq1  AACCTACCAGAAGGGTTAAAACAGTGACTACATATTGATTAAACTTTAAA  950
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AACCTACCAGAAAGGTTAAAACAGTGACTACATATTGATTAAACTTTAAA  950

seq1  CATATATACACTGAAGGATAGTGCACCCAATTTCAT-AAAATAAGCAGTA  999
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CATATATACACTGAAGGATAGTGCACCCAATTTCATAAAAATAAGCAGTA  1000

seq1  CTAGATGTTAAAGCACGAATGGATCTCAACAGGTGGAAGTAGGTGACTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGTTAAAGCACGAATGGATCTCAACAGGTGGAAGTAGGTGACTTT  1050

seq1  AATACCTTTTTCTCGTGAAGACAAAAAAAAATCAACAAAGAAATATCAAA  1099
      ||||||||||||||||||| | ||||||||  ||||||||||| ||| ||
seq2  AATACCTTTTTCTCGTGAA-AAAAAAAAAATCCAACAAAGAAAAATC-AA  1098

seq1  GTTAAACAACATTTTAGATC  1119
      |||  |||||||||||||||
seq2  GTT--ACAACATTTTAGATC  1116

seq1: chr10_110108810_110109861
seq2: B6Ng01-089O20.g_70_1119 (reverse)

seq1  TGGTTCGCCAATTTCTCTCATGAGATTTACTTTGTCCCATGCTCTTGTGA  50
      ||||||||||||||||||||||||| |||| ||||||||||||| |||||
seq2  TGGTTCGCCAATTTCTCTCATGAGA-TTAC-TTGTCCCATGCTC-TGTGA  47

seq1  ATGAAACTGGCTTTCTTCTCCCT-CCATGCATAGAATTTCTGAAAGTATT  99
      ||||||| ||| ||||||| ||| |||||||||||| |||||||||||||
seq2  ATGAAACAGGC-TTCTTCTACCTCCCATGCATAGAA-TTCTGAAAGTATT  95

seq1  TTCTGCAGTAGCATGTGGTTGTCATCAATTCCCTTACCATGTGGAATCTT  149
      || ||||||||||||||| |||||||||| |||| |||||||||||||||
seq2  TT-TGCAGTAGCATGTGG-TGTCATCAATCCCCTAACCATGTGGAATCTT  143

seq1  AATTTGGTCTTCCTGAACATATCTCAGAAGTTCATGCA-TTTTATGTATA  198
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AATTTGGTCTTCCTGAACATATCTCAGAAGTTCATGCATTTTTATGTATA  193

seq1  TGT-GGCTGAACGCGCCTACTGATTTG-ACTGCATCCTCCAA-CCACGAA  245
      ||| ||||||||||||||||||||||| |||||||||||||| |||||||
seq2  TGTGGGCTGAACGCGCCTACTGATTTGAACTGCATCCTCCAACCCACGAA  243

seq1  GTTCTCTGTCTTGTCTGTTAATGCTTTCTATGGGGAGGCTGTTCATTCTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTGTCTTGTCTGTTAATGCTTTCTATGGGGAGGCTGTTCATTCTC  293

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGCATT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGCATT  343

seq1  TCTGATTGATTCTTCTTCGGTGTCTCAGATTCACTGTGGAATTTTTTTTC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTGATTCTTCTTCGGTGTCTCAGATTCACTGTGGAATTTTTTTTC  393

seq1  CTCCACATTTTTAAATCTCTACTCCAAGCTACTGACTCTTTTATCCAGTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACATTTTTAAATCTCTACTCCAAGCTACTGACTCTTTTATCCAGTT  443

seq1  TACTAAGAACTTTGTGTCCTGACATGCTATGCTCATTTAGTTCATCTGTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGAACTTTGTGTCCTGACATGCTATGCTCATTTAGTTCATCTGTT  493

seq1  TATGCTTCCCCTTTCTCTCAGCAATCTCCTTCTGCTTGCTGTGTCTCACC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTCCCCTTTCTCTCAGCAATCTCCTTCTGCTTGCTGTGTCTCACC  543

seq1  TATTACTACCACCACCCAGCTAACCAGTCCCTCAAGAAGCCAGGCAGTCG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTACCACCACCCAGCTAACCAGTCCCTCAAGAAGCCAGGCAGTCG  593

seq1  ATAGCTATGTCCATGTCCTTTCCAATCTCTTTACAGAAGCAACCATTCAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTATGTCCATGTCCTTTCCAATCTCTTTACAGAAGCAACCATTCAA  643

seq1  TTGTCATCCTTCTTAGGGTGGGTTTTTTTTCCTCTTTTTTTGGCATCAAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATCCTTCTTAGGGTGGGTTTTTTTTCCTCTTTTTTTGGCATCAAT  693

seq1  TTTTCTCATAACTTCTTAAATGATCTTCTAGAGTCTACCCTTAGTACCTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCATAACTTCTTAAATGATCTTCTAGAGTCTACCCTTAGTACCTC  743

seq1  ACACACACTCTCCTTACTCTTTCTAACATGTATTGTGGATAATTTAAATC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACTCTCCTTACTCTTTCTAACATGTATTGTGGATAATTTAAATC  793

seq1  TGATCCTTTCTCCTGTATGAAGGTGATCAATAATTCTTCATTGTTTTTAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTTTCTCCTGTATGAAGGTGATCAATAATTCTTCATTGTTTTTAA  843

seq1  ATCAAATCCAAAGTTGCCATGGTGGAATAAAGAAGAAAGAAGGACTCTGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATCCAAAGTTGCCATGGTGGAATAAAGAAGAAAGAAGGACTCTGT  893

seq1  AATTTTACTACCTATCTCACAACAGATGGTTTCAACAATAAGCTATTTAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTACTACCTATCTCACAACAGATGGTTTCAACAATAAGCTATTTAT  943

seq1  GATTCATTGCCATTATTTATGATAGTCTCTGTATCTTTTTTGTTTTGTTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATTGCCATTATTTATGATAGTCTCTGTATCTTTTTTGTTTTGTTT  993

seq1  TTTGTTTTTTCAAGACAGGGTTTCTCTGTATCGCCCGCCCTGACTGTCCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTCAAGACAGGGTTTCTCTGTATCGCCCGCCCTGACTGTCCT  1043

seq1  GGAATTC  1052
      |||||||
seq2  GGAATTC  1050