BAC Information

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BAC

Clone NameB6Ng01-089O23
Chromosome4 (Build37)10 (Build37)
Map Location 87,905,378 - 87,905,886104,054,760 - 104,054,907
singlet/doubletsingletsinglet
Overlap geneBC057079
Upstream geneMllt3
Downstream genePtplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1, LOC100040617, Mtap, LOC625574
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089O23.bB6Ng01-089O23.g
ACCDH902379DH902380
length503753
definitionDH902379|Mus musculus domesticus DNA, BAC clone: B6Ng01-089O23, 5' end.DH902380|Mus musculus domesticus DNA, BAC clone: B6Ng01-089O23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(87,905,378 - 87,905,886)(104,054,760 - 104,054,907)
sequence
caggaggaaagtaactgcattaagtcacgcattggatatggagtaaaaaa
ataagaagcaagccaatgtcagatatgtgtccatggaggagatagtgtgg
aagagcacttacatactcaatattcccaaacctttggaatttccaataca
tgagtattcaactgtacaggaaaagtggttatcacagcataagagagcac
agtgcggaattatttacgctcatgcaatttctaagagtcttgaaaacttt
tcacaagttggcatctaacatcatgaatttgagagttgtgacagacttat
ttgctaatatatggaaaatattgctagtttaatataaaactgctaaaaca
gtctactatgtttatactgtgagataaaatgtcattgcaagatctacaat
catccattttataaaatatatagacaatgcctaaaagtgcttaaaacact
atatatatacacacacgtatatatgtatatgtgtgtgtgtgtgtgtgtgt
gtg
cggaatttttgaaaagctctgtaccccattttttattaggtattttctta
taaaattccaatgctaccccaaaggtcctccaaaccctccctcccccact
tccctacccccaccccactcccactttttggccctggtgttctcctgtac
tgaggcatataaagtttgcaagaccaatgggcctctctttccactgatgg
ccaactaagccatcttctgatacatatgcagctagatacacgagctccgg
ggatgtaccccatttttaatgcagttatttgaatttctggagttcacctt
cttgagttctttgtatatattggatattagtcccctatcagatttaggat
tggtaaaaattctttcccgatttcttggtggtctttttgtcttattgaca
gtgtcttttgccttacagaagctttgcaattttatgaggtcccattttcg
attcttgattttacagcacaggccattgctgttctgttttggaatttttc
ccctgtgcccatatcttcaacgcttttccccactttctcctctataaatt
tcagtgtctctgggttttatgtggagttctttgatccacttagacttgag
ctgatcaatggaatagaattgaagacccagaaatgaacacacacatctat
ggtcacttgatctttgacaagggagctaaaaccatccagtggggaaaaga
cagcattttcaacaaatgggtgctggcacaactggcggttatcatgtaga
aga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_87905378_87905886
seq2: B6Ng01-089O23.b_46_554 (reverse)

seq1  CACACACACACACACACACACACATATACATATATACGTGTGTGTATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACATATACATATATACGTGTGTGTATATA  50

seq1  TATAGTGTTTTAAGCACTTTTAGGCATTGTCTATATATTTTATAAAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGTTTTAAGCACTTTTAGGCATTGTCTATATATTTTATAAAATGG  100

seq1  ATGATTGTAGATCTTGCAATGACATTTTATCTCACAGTATAAACATAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTGTAGATCTTGCAATGACATTTTATCTCACAGTATAAACATAGTA  150

seq1  GACTGTTTTAGCAGTTTTATATTAAACTAGCAATATTTTCCATATATTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTTTAGCAGTTTTATATTAAACTAGCAATATTTTCCATATATTAG  200

seq1  CAAATAAGTCTGTCACAACTCTCAAATTCATGATGTTAGATGCCAACTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAGTCTGTCACAACTCTCAAATTCATGATGTTAGATGCCAACTTG  250

seq1  TGAAAAGTTTTCAAGACTCTTAGAAATTGCATGAGCGTAAATAATTCCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGTTTTCAAGACTCTTAGAAATTGCATGAGCGTAAATAATTCCGC  300

seq1  ACTGTGCTCTCTTATGCTGTGATAACCACTTTTCCTGTACAGTTGAATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCTCTCTTATGCTGTGATAACCACTTTTCCTGTACAGTTGAATAC  350

seq1  TCATGTATTGGAAATTCCAAAGGTTTGGGAATATTGAGTATGTAAGTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTATTGGAAATTCCAAAGGTTTGGGAATATTGAGTATGTAAGTGCT  400

seq1  CTTCCACACTATCTCCTCCATGGACACATATCTGACATTGGCTTGCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACACTATCTCCTCCATGGACACATATCTGACATTGGCTTGCTTCT  450

seq1  TATTTTTTTACTCCATATCCAATGCGTGACTTAATGCAGTTACTTTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTACTCCATATCCAATGCGTGACTTAATGCAGTTACTTTCCTC  500

seq1  CTGGAATTC  509
      |||||||||
seq2  CTGGAATTC  509

seq1: chr10_104054760_104054907
seq2: B6Ng01-089O23.g_673_820 (reverse)

seq1  TCTTCTACATGATAACAGCCAGTTGTGCCAGCA-TGATTTGTTGAAAATG  49
      |||||||||||||||| ||||||||||||||||   ||||||||||||||
seq2  TCTTCTACATGATAACCGCCAGTTGTGCCAGCACCCATTTGTTGAAAATG  50

seq1  CTGTCTTTTTTTCCACTGGATAGTTTTAGCTCCCTTGTCAAAGATCAAGT  99
      ||||| ||||  ||||||||| ||||||||||||||||||||||||||||
seq2  CTGTC-TTTTCCCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGT  99

seq1  GACCATAGGTGTGTGGGTTCATCTCTGGATCTTCAATTCTGTTCCATTG  148
      |||||||| |||||| |||||| ||||| ||||||||||| ||||||||
seq2  GACCATAGATGTGTGTGTTCATTTCTGGGTCTTCAATTCTATTCCATTG  148