BAC Information

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BAC

Clone NameB6Ng01-090D08
Chromosome19 (Build37)10 (Build37)
Map Location 35,383,123 - 35,384,242104,054,378 - 104,055,132
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneFas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464
Downstream geneLOC100042292, A830019P07Rik, Htr7, Rpp30, Ankrd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090D08.bB6Ng01-090D08.g
ACCDH902572DH902573
length1,114820
definitionDH902572|Mus musculus domesticus DNA, BAC clone: B6Ng01-090D08, 5' end.DH902573|Mus musculus domesticus DNA, BAC clone: B6Ng01-090D08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(35,383,123 - 35,384,242)(104,054,378 - 104,055,132)
sequence
gaattcagtgacagcctccagcaccagacacatctgcaagtgtctgggga
acagcagtagctatgagaaggcctggtgggcaatcccagggaagggtctg
ccctttctaggttctgatttgagctgcttgtgaatacaaggagcaaaatc
ccaaacagtgacaattggtaataaatagctcccttttctctaccttccat
ctcttccatcctagaccagtaggcgctcagcctactttctgctcctttga
cagcttcctcattatattccacccatcactcaagtgcagttaaaatgcta
gctcctcttggaagccctctgcttttccactgtaatcttcctctgctata
tccatggtttctgtgggcatcattcgacaggttgcattctgaggagctag
gtttgatacacatctggtctgattaccctggaggatcctaagttcattga
gagaaggaacacacttgttccactgcccactgcctaatgtaggtgtttat
gaaactcaggaaatgagtgggctcacctatagttcactctcctgacgtta
aaacacaggctcaagtgtggttactgtatctactagctctgagtcttgag
atgaattacagggccctttaagctatcctgttttgttattagttaagttt
gtttttctttttgccttccattttcttaaggtggttgaagttggaaagca
gcaattgaaagataattatgaatagagggaggtccaaggtaaatatttgc
tgtttataatgaaagatttatgagagagagagagagagagagagagagag
agagagagagagagagagagagagagagccacaatgtaaatggagaatat
ttttgttgcacctcctacagactagcctctgttgtatagaaaggatttgg
aaatatctatatgtggatatgtaagatctatttatttggagacccaggtg
tatacttgagacgaagattattcacactgtgtcttatggaaagggcctta
tttacttaggctcaggaagagctggattctatattctcaggcagcaaaac
tcatctgtttaataacttcagtacaggttggtgactgattgtagaactgc
tactatccttattt
gaattctttgtttagctctgagccccatttttaatggggttatttacaga
ttcaatgcaatccccatcaaaattccaactcaattcttcaacgaattaga
aagagcaatctgcaaattcatctggaataacaagaaacctaggatagcaa
tatctcttctcaaggataaaagaacctctggtggaatcaccatgcctgac
ctaaagctgtactacagagcaattgtgataaaaactgcttggtactggta
tagtgacagacaagtagaccaatggaatagaattgaagacccagaaatga
acccacacacctatggtcacttgatctttgacaagggagctaaaaccatc
cagtggaagaagtacagcattttcaacaaatggtgatggcccaactggcg
gttatcatgcagaagaatgcgaattgatccatttctatctccttgtacta
aggtcaaatctaagtggattaaggaactccacatgaaaccagagacagtg
aaacttatagaggagaaagtggggaaaagcctcgaagatatgggcacagg
ggaaaaattcctgaatagaacagcaatggcttgtgctgtaagattgagaa
tcaacaaatgggaaagacactgtcaataaggcaaaaagaccaccaacaga
ttgggaaaggctcttttacctatcgtaaatcagataggggactaatatcc
tatatatataaagaactcaagaaggtggactccagaaaatcaaataaccc
tattaaaaatggggcttagagctacgaaaattattcttaaccagtgtgtg
agaggaaagaattctatgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_35383123_35384242
seq2: B6Ng01-090D08.b_48_1161

seq1  GAATTCAGTGACAGCCTCCAGCACCAGACACATCTGCAAGTGTCTGGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGACAGCCTCCAGCACCAGACACATCTGCAAGTGTCTGGGGA  50

seq1  ACAGCAGTAGCTATGAGAAGGCCTGGTGGGCAATCCCAGGGAAGGGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGTAGCTATGAGAAGGCCTGGTGGGCAATCCCAGGGAAGGGTCTG  100

seq1  CCCTTTCTAGGTTCTGATTTGAGCTGCTTGTGAATACAAGGAGCAAAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCTAGGTTCTGATTTGAGCTGCTTGTGAATACAAGGAGCAAAATC  150

seq1  CCAAACAGTGACAATTGGTAATAAATAGCTCCCTTTTCTCTACCTTCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAGTGACAATTGGTAATAAATAGCTCCCTTTTCTCTACCTTCCAT  200

seq1  CTCTTCCATCCTAGACCAGTAGGCGCTCAGCCTACTTTCTGCTCCTTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCATCCTAGACCAGTAGGCGCTCAGCCTACTTTCTGCTCCTTTGA  250

seq1  CAGCTTCCTCATTATATTCCACCCATCACTCAAGTGCAGTTAAAATGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCCTCATTATATTCCACCCATCACTCAAGTGCAGTTAAAATGCTA  300

seq1  GCTCCTCTTGGAAGCCCTCTGCTTTTCCACTGTAATCTTCCTCTGCTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCTTGGAAGCCCTCTGCTTTTCCACTGTAATCTTCCTCTGCTATA  350

seq1  TCCATGGTTTCTGTGGGCATCATTCGACAGGTTGCATTCTGAGGAGCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGTTTCTGTGGGCATCATTCGACAGGTTGCATTCTGAGGAGCTAG  400

seq1  GTTTGATACACATCTGGTCTGATTACCCTGGAGGATCCTAAGTTCATTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATACACATCTGGTCTGATTACCCTGGAGGATCCTAAGTTCATTGA  450

seq1  GAGAAGGAACACACTTGTTCCACTGCCCACTGCCTAATGTAGGTGTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGAACACACTTGTTCCACTGCCCACTGCCTAATGTAGGTGTTTAT  500

seq1  GAAACTCAGGAAATGAGTGGGCTCACCTATAGTTCACTCTCCTGACGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCAGGAAATGAGTGGGCTCACCTATAGTTCACTCTCCTGACGTTA  550

seq1  AAACACAGGCTCAAGTGTGGTTACTGTATCTACTAGCTCTGAGTCTTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGGCTCAAGTGTGGTTACTGTATCTACTAGCTCTGAGTCTTGAG  600

seq1  ATGAATTACAGGGCCCTTTAAGCTATCCTGTTTTGTTATTAGTTAAGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTACAGGGCCCTTTAAGCTATCCTGTTTTGTTATTAGTTAAGTTT  650

seq1  GTTTTTCTTTTTGCCTTCCATTTTCTTAAGGTGGTTGAAGTTGGAAAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTTTTTGCCTTCCATTTTCTTAAGGTGGTTGAAGTTGGAAAGCA  700

seq1  GCAATTGAAAGATAATTATGAATAGAGGGAGGTCCAAGGTAAATATTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTGAAAGATAATTATGAATAGAGGGAGGTCCAAGGTAAATATTTGC  750

seq1  TGTTTATAATGAAAGATTTATGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATAATGAAAGATTTATGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  800

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGCCACAATGTAAATGGAGAATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGCCACAATGTAAATGGAGAATAT  850

seq1  TTTTGTTGCACCTCCTACAGACTAGCCTCTGTTGTATAGAAAGGATTTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGCACCTCCTACAGACTAGCCTCTGTTGTATAGAAAGGATTTGG  900

seq1  AAATATCTATATGTGGATATGTAAGATCTATTTATTTGGAGACCCAGGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTATATGTGGATATGTAAGATCTATTTATTTGGAGACCCAGGTG  950

seq1  TATACTTGAGACAGAAGATTATTCACACTGTGTCTTATTGGAAAGGGCCT  1000
      |||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  TATACTTGAGAC-GAAGATTATTCACACTGTGTCTTA-TGGAAAGGGCCT  998

seq1  TATTTACCTTAAGCTCAGGAAGAGCTGGATCCTATATTCTCCAGGCAGCA  1050
      |||||| |||| |||||||||||||||||| ||||||||| |||||||||
seq2  TATTTA-CTTAGGCTCAGGAAGAGCTGGATTCTATATTCT-CAGGCAGCA  1046

seq1  AAACTCATCTGTTAAATAACGTCAAGTACAGGTTGGTGACTGAGTTGTAG  1100
      ||||||||||||| |||||| || ||||||||||||||||||| ||||||
seq2  AAACTCATCTGTTTAATAACTTC-AGTACAGGTTGGTGACTGA-TTGTAG  1094

seq1  -ACTGCTACTACTCCTTATTT  1120
       |||||||||| |||||||||
seq2  AACTGCTACTA-TCCTTATTT  1114

seq1: chr10_104054378_104055132
seq2: B6Ng01-090D08.g_114_835 (reverse)

seq1  AGCCCCATTTTTTAATAGGGTTATTTGATTTTCTGAAGTCCACCTTCTTG  50
      ||||||| ||||||||||||||||||||||||||| ||||||||||||||
seq2  AGCCCCA-TTTTTAATAGGGTTATTTGATTTTCTGGAGTCCACCTTCTTG  49

seq1  AGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGAATTAGGATAGGT  100
      |||||||||||||| | ||||||||||||||||||||| ||| |||||||
seq2  AGTTCTTTATATATATAGGATATTAGTCCCCTATCTGATTTACGATAGGT  99

seq1  -AAAGATCCTTTCTCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTG  149
       ||||| |||||| |||||||||||||||||||||| ||||||||| |||
seq2  AAAAGAGCCTTTCCCAATCTGTTGGTGGTCTTTTTGCCTTATTGACAGTG  149

seq1  TCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTTATCAAC  199
      ||||                                |||||||| |  | 
seq2  TCTT--------------------------------TCCCATTTGTTGAT  167

seq1  TCTCTATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCC  249
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCC  217

seq1  CTGTACCCATATCTTCGAGGCTTTTCCCTACTTTTTCCTCTATAAGTTTC  299
      |||| ||||||||||||||||||||||| ||||| |||||||||||||||
seq2  CTGTGCCCATATCTTCGAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTC  267

seq1  AGTGTCTCTGGTTTTATGTGGAGTTCCTTAATCCACTTAGATTTTACCTT  349
      | |||||||||||| ||||||||||||||||||||||||||||| |||||
seq2  ACTGTCTCTGGTTTCATGTGGAGTTCCTTAATCCACTTAGATTTGACCTT  317

seq1  AGTACAAGGAGATAGTAATTGATCAATTCACAATCTTCTACATGATAACA  399
      ||||||||||||||| ||| ||||||||| || |||||| ||||||||| 
seq2  AGTACAAGGAGATAGAAATGGATCAATTCGCATTCTTCTGCATGATAACC  367

seq1  GCCAGTTGTGCCAGCATGATTTGTTGAAAATGCTGTCTTTTTTTCCACTG  449
      |||||||| |||| ||  ||||||||||||||||||   || ||||||||
seq2  GCCAGTTGGGCCATCACCATTTGTTGAAAATGCTGT-ACTTCTTCCACTG  416

seq1  GATAGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTGGGT  499
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTGGGT  466

seq1  TCATCTCTGGATCTTCAATTCTGTTCCATTGGTCTACTTGTCTGTCGCTA  549
      |||| ||||| ||||||||||| ||||||||||||||||||||||| |||
seq2  TCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTCACTA  516

seq1  TACAAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTACAGTTTTAG  599
      ||| ||||||| |||||||||||||||||||||||||||||||| |||||
seq2  TACCAGTACCAAGCAGTTTTTATCACAATTGCTCTGTAGTACAGCTTTAG  566

seq1  GTCCGGGATGGTGATTCCACCAGAGGTTCTTTTATCCTTGAGAAGAGTTT  649
      ||| || |||||||||||||||||||||||||||||||||||||||| | 
seq2  GTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTTGAGAAGAGATA  616

seq1  TTGCTATCCTAGGTTTTTTGTTATTCCAGATGAATCTGCCGATTGCCCTT  699
      |||||||||||||||| |||||||||||||||||| ||| |||||| |||
seq2  TTGCTATCCTAGGTTTCTTGTTATTCCAGATGAATTTGCAGATTGCTCTT  666

seq1  TATAATTCTTTGAAGAATTGAGTTGGAATTTTGATGGGGATTGCATTGAA  749
      | |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTCGTTGAAGAATTGAGTTGGAATTTTGATGGGGATTGCATTGAA  716

seq1  TCTGTA  755
      ||||||
seq2  TCTGTA  722