BAC Information

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BAC

Clone NameB6Ng01-090E02
Chromosome10 (Build37)
Map Location 18,410,294 - 18,411,246
singlet/doubletsinglet
Overlap geneD10Bwg1379e
Upstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729
Downstream geneEG237300, Perp, Tnfaip3, Tpi-rs5, EG637620, Olig3, Ifngr1, Il22ra2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090E02.bB6Ng01-090E02.g
ACCDH902608DH902609
length1,138949
definitionDH902608|Mus musculus domesticus DNA, BAC clone: B6Ng01-090E02, 5' end.DH902609|Mus musculus domesticus DNA, BAC clone: B6Ng01-090E02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccctatcttttaagggggttatttgatt
ttctggagtccaccctcttgagttctttatatatattggatattagtccc
ctatctgatttaagataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaagctttgcagtttca
tgaggtcccgtttgtcaatcctcgatcttacagcacaagccattgctgtt
ctattcaggaattttttccctgtgcccatatcttcgagacttttccccac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttga
tccacttagatttgatcttagtacaaggagagaggaatgggtcgattcgc
attcttctacatgataacaaccaattgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtcactataccagtaccatgaagtttttataacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcagattgctctttctaatttcgttgaagaattgagttggaattt
tgatggggattgcattgaatctgtagattgcttttggcaagatagccatt
tttacaatgttgatcctgccaatccatgagcatgggagatccttccatct
tctggagatcttttaatttctttctttcagagacttgaagttttatcata
cagatcttttgactttcttagtagagtcacgccaagatattttatattta
tgtgtgactattgagaaaggggtgtgttttcctaaattctttctcagctg
tttattcttgtggtaagagaattggccattgaacttgttgagtaatttat
attcagctactgtcacgaaagcctgttatcagggttagaggtctcgggga
atttttaaggtactcatatatacacactctattacttg
gaattcagtctgaggggaagtctattcttttttttttttggctttttgag
acagggtttctctggctgtcctggaactcactctgtagaccaggctggcc
tcaaactcagaaatccacctgcctctgcctcccaagtgctaggattaaag
gcgtgcgccaccacattctcttgtctgctaagtctcccctgacggatctg
caggtgggagacatgactgtccccattgtgtagatggttgaagagaaact
ttaaaatacaccagttacaatgggggaaagctaggagttgctgagactta
tgttgtcgttatccccctagagtaataatctgtccttgctcactctatga
aattcaaattggattttgtaatcttgccaatcaagctctaacaacaccac
agaaaggtgtcatggacaacctctgacaatagcacaataatatgtcatgc
agtttttataagcattgggtttttccaatggcattgagccattgaagaaa
acacaactaatgccattagatgtgtgtttgaagaagggaagggaatagca
tctaccatcaagtgtttttatatgacaaacgcctgcctgactcaaccagc
tcagttagaaaagtcctggacatggaacctgtgtacagtttggctggcag
gtctgagacttggattgtgcgcttggaaatctgttgttagaaagcaggta
aagtatgtttcttaatgcgcaccaacactacagtcaacccttgtggtgaa
agaagaaaaacagactacacaaaagaccatttttgttttttattttcttt
ttgcagagctgaagatgaaacttctagagctttgtacatactagacacac
actctctatccctgagctataccccagcccaaaaggatatgtttgtttca
tctcaataatattttgtgtgtgtgtgtgtgcatgtgtggtgcggtgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_18410294_18411246
seq2: B6Ng01-090E02.g_70_1017 (reverse)

seq1  CACACACGCA-CACACATGCACACACACACACACAAAAATATTATTGAGA  49
      ||||| |||| ||||||||||||||||||||||| |||||||||||||||
seq2  CACAC-CGCACCACACATGCACACACACACACAC-AAAATATTATTGAGA  48

seq1  TGAAACAAACATAATCCTTTTGGGCTGGGGGTATAGCTCAGGGATAGAGA  99
      |||||||||||| ||||||||||||| |||||||||||||||||||||||
seq2  TGAAACAAACAT-ATCCTTTTGGGCT-GGGGTATAGCTCAGGGATAGAGA  96

seq1  GTGTGTGTCTAGTATGTACAAAGCTCTAGAAGTTTCATCTTCAGCTCTGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTCTAGTATGTACAAAGCTCTAGAAGTTTCATCTTCAGCTCTGC  146

seq1  AAAAAGGAAAATAAAAAACAAAAATGGTCCTTTTGTGTAGTCTGTTTTTC  199
      ||||| |||||||||||||||||||||| |||||||||||||||||||||
seq2  AAAAA-GAAAATAAAAAACAAAAATGGT-CTTTTGTGTAGTCTGTTTTTC  194

seq1  TTCTTTCACCACAAGGGTTGACTGTAGTGTTGGTGCGCATTAAGAAACAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCACCACAAGGGTTGACTGTAGTGTTGGTGCGCATTAAGAAACAT  244

seq1  ACTTTACCTGCTTTCTAACAACAGATTTCCAAGCGCACAATCCAAGTCTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACCTGCTTTCTAACAACAGATTTCCAAGCGCACAATCCAAGTCTC  294

seq1  AGACCTGCCAGCCAAACTGTACACAGGTTCCATGTCCAGGACTTTTCTAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGCCAGCCAAACTGTACACAGGTTCCATGTCCAGGACTTTTCTAA  344

seq1  CTGAGCTGGTTGAGTCAGGCAGGCGTTTGTCATATAAAAACACTTGATGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTGGTTGAGTCAGGCAGGCGTTTGTCATATAAAAACACTTGATGG  394

seq1  TAGATGCTATTCCCTTCCCTTCTTCAAACACACATCTAATGGCATTAGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGCTATTCCCTTCCCTTCTTCAAACACACATCTAATGGCATTAGTT  444

seq1  GTGTTTTCTTCAATGGCTCAATGCCATTGGAAAAACCCAATGCTTATAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTCTTCAATGGCTCAATGCCATTGGAAAAACCCAATGCTTATAAA  494

seq1  AACTGCATGACATATTATTGTGCTATTGTCAGAGGTTGTCCATGACACCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCATGACATATTATTGTGCTATTGTCAGAGGTTGTCCATGACACCT  544

seq1  TTCTGTGGTGTTGTTAGAGCTTGATTGGCAAGATTACAAAATCCAATTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGGTGTTGTTAGAGCTTGATTGGCAAGATTACAAAATCCAATTTG  594

seq1  AATTTCATAGAGTGAGCAAGGACAGATTATTACTCTAGGGGGATAACGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATAGAGTGAGCAAGGACAGATTATTACTCTAGGGGGATAACGAC  644

seq1  AACATAAGTCTCAGCAACTCCTAGCTTTCCCCCATTGTAACTGGTGTATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAGTCTCAGCAACTCCTAGCTTTCCCCCATTGTAACTGGTGTATT  694

seq1  TTAAAGTTTCTCTTCAACCATCTACACAATGGGGACAGTCATGTCTCCCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTTTCTCTTCAACCATCTACACAATGGGGACAGTCATGTCTCCCA  744

seq1  CCTGCAGATCCGTCAGGGGAGACTTAGCAGACAAGAGAATGTGGTGGCGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGATCCGTCAGGGGAGACTTAGCAGACAAGAGAATGTGGTGGCGC  794

seq1  ACGCCTTTAATCCTAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTTTAATCCTAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGT  844

seq1  TTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGAGAAACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGAGAAACC  894

seq1  CTGTCTCAAAAAGCCAAAAAAAAAAAAGAATAGACTTCCCCTCAGACTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCAAAAAGCCAAAAAAAAAAAAGAATAGACTTCCCCTCAGACTGA  944

seq1  ATTC  953
      ||||
seq2  ATTC  948