BAC Information

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BAC

Clone NameB6Ng01-090F03
Chromosome10 (Build37)12 (Build37)
Map Location 29,665,004 - 29,666,13580,324,142 - 80,324,276
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146, Rspo3, EG630389, Rpl12, LOC623064
Downstream geneLOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815, Trmt11, Hint3, Ncoa7, LOC382354, Hey2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090F03.bB6Ng01-090F03.g
ACCDH902656DH902657
length1,100518
definitionDH902656|Mus musculus domesticus DNA, BAC clone: B6Ng01-090F03, 5' end.DH902657|Mus musculus domesticus DNA, BAC clone: B6Ng01-090F03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(29,665,004 - 29,666,135)(80,324,142 - 80,324,276)
sequence
gaattcacatctctttatttataagttactttggcaaattaaagacaaga
ggaaaattaaaaaccatggtagacatggtagagatgttgaaacaccttcc
tgggctttactatttttagagccattatcagaaaacagtgagaattaatc
actttaaacaggaaatgtcttttactatgagataaggaagttgtatttga
ggctcctcttagttattttacttagagggtaataaaatgtgtcaaattta
ctgtaggaatggaaatgaaacaataagtaacccttaagattttatttcct
cttattatatatcataatttaaaagagattaaagattaaagcaatatgaa
tgaatacatgctgatttttccttggctactcaatcaaaaatataaagata
agattagaaagcaaaatgtaataaaatttatgtttaattttttgacattc
ccaactctacatactaaaatatttttacacacatgtgtatggaattattt
ttatgtgaaactaataatgcttgactattttaagcagttaactgggatat
taataccttttttgacaaaagagtatatgagaacactggaaactggtgtt
atcaaaacagaagcaggggatggagaaaggcaccatagactcctcatgca
gagtacaaagatggaaaccaaaaatggaaatgagagaaaataacaaaaga
tggaaatcagtaggattaataaaataaaaaatgtccataataccaaaagc
agtctacatagtcaatgcaatgccccataagaattccaacacagttcctt
acagaatttaatataacaattttcatcttcatatggaaacacacacacac
acacagagggtgactgaactcttgataatatatatatatatatatatata
tatattgattgtgactaaaaaccttcatgagcttcagttccatcacacat
ggagcagacctatgcacaggactctatacccaatactgctgagtgggagc
gagcctcccagagtgtggacaaggcctgtgagcacagtagaccaccactg
ctgctcaaagaacctgtcagaccctcagacacagaaaaaggactgcctgg

gaattctttgtttagctctgtactccattttttaatagggttatttggtt
ctctggagtctaacttcttgagttctttgtatatatgggatattagccct
ctattggatttaggattggtaaagatcttgtcccaatatgttggttgcct
ttttgtcttattgacagtgttctttgccttacagaagctttgcaatttta
tgaggtctcatttgtcaatttttgatcttagagtacaagccattggttcc
aggaatttttcccctgtgcccatatgtttgaggctcttcctcactttctc
ctctctaagtttcagagtctctagttttatgtggatgtccttcatccact
tgaacttgagctttgtacaggagataaaaatggatagatttgccttctat
attctaactgccagttgagccagcaccatttgttgaaaatgctgtctttt
ttccacaggatgaggtgatttttaaatatctctctctctctctctctctc
tctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_29665004_29666135
seq2: B6Ng01-090F03.b_45_1144 (reverse)

seq1  CCAGGCAGTTCCTTTTTTCCTGTGTCCTGAGGGTCCTGGACAGGTTTCTC  50
      |||||||| ||||||||  |||||| |||||||||   |||||| |||| 
seq2  CCAGGCAG-TCCTTTTT--CTGTGT-CTGAGGGTC--TGACAGG-TTCTT  43

seq1  TGAGCAGCAGTGGTGGTCCTACCTGTGCTCACAGGCC-TGTCCACACTCC  99
      ||||||||||||||||| ||| ||||||||||||||| |||||||||| |
seq2  TGAGCAGCAGTGGTGGT-CTA-CTGTGCTCACAGGCCTTGTCCACACT-C  90

seq1  TGGGAGGCTCGCTCCCACTCAGCAGTATTGGGTATAGAGTCCTGTGGCAT  149
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGGGAGGCTCGCTCCCACTCAGCAGTATTGGGTATAGAGTCCTGT-GCAT  139

seq1  AGGTTCTGCTCCATGTGTTGATGGAAACTGGAAGCTCATGAAGGTTTTTT  199
      ||| ||||||||||||| |||||| |||| ||||||||||||||||||| 
seq2  AGG-TCTGCTCCATGTG-TGATGG-AACT-GAAGCTCATGAAGGTTTTT-  184

seq1  AAGTCACATATCTATTATTATTATTATTATTATTATTATTATTATTATTA  249
       |||||||           || | |||   |||   |||   |||   ||
seq2  -AGTCACA-----------ATCAATATATATATATATATATATATATATA  222

seq1  TTATTTATTCAAGAGTTCAGTCACCCTCTGTGTGTGTGTGTGTGTTTCCA  299
      |||     ||||||||||||||||||||||||||||||||||||||||||
seq2  TTA-----TCAAGAGTTCAGTCACCCTCTGTGTGTGTGTGTGTGTTTCCA  267

seq1  TATGAAGATGAAAATTGTTATATTAAATTCTGTAAGGAACTGTGTTGGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGATGAAAATTGTTATATTAAATTCTGTAAGGAACTGTGTTGGAA  317

seq1  TTCTTATGGGGCATTGCATTGACTATGTAGACTGCTTTTGGTATTATGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATGGGGCATTGCATTGACTATGTAGACTGCTTTTGGTATTATGGA  367

seq1  CATTTTTTATTTTATTAATCCTACTGATTTCCATCTTTTGTTATTTTCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTATTTTATTAATCCTACTGATTTCCATCTTTTGTTATTTTCTC  417

seq1  TCATTTCCATTTTTGGTTTCCATCTTTGTACTCTGCATGAGGAGTCTATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCCATTTTTGGTTTCCATCTTTGTACTCTGCATGAGGAGTCTATG  467

seq1  GTGCCTTTCTCCATCCCCTGCTTCTGTTTTGATAACACCAGTTTCCAGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTTTCTCCATCCCCTGCTTCTGTTTTGATAACACCAGTTTCCAGTG  517

seq1  TTCTCATATACTCTTTTGTCAAAAAAGGTATTAATATCCCAGTTAACTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATATACTCTTTTGTCAAAAAAGGTATTAATATCCCAGTTAACTGC  567

seq1  TTAAAATAGTCAAGCATTATTAGTTTCACATAAAAATAATTCCATACACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAGTCAAGCATTATTAGTTTCACATAAAAATAATTCCATACACA  617

seq1  TGTGTGTAAAAATATTTTAGTATGTAGAGTTGGGAATGTCAAAAAATTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTAAAAATATTTTAGTATGTAGAGTTGGGAATGTCAAAAAATTAA  667

seq1  ACATAAATTTTATTACATTTTGCTTTCTAATCTTATCTTTATATTTTTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATTTTATTACATTTTGCTTTCTAATCTTATCTTTATATTTTTGA  717

seq1  TTGAGTAGCCAAGGAAAAATCAGCATGTATTCATTCATATTGCTTTAATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTAGCCAAGGAAAAATCAGCATGTATTCATTCATATTGCTTTAATC  767

seq1  TTTAATCTCTTTTAAATTATGATATATAATAAGAGGAAATAAAATCTTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCTCTTTTAAATTATGATATATAATAAGAGGAAATAAAATCTTAA  817

seq1  GGGTTACTTATTGTTTCATTTCCATTCCTACAGTAAATTTGACACATTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTACTTATTGTTTCATTTCCATTCCTACAGTAAATTTGACACATTTT  867

seq1  ATTACCCTCTAAGTAAAATAACTAAGAGGAGCCTCAAATACAACTTCCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCCTCTAAGTAAAATAACTAAGAGGAGCCTCAAATACAACTTCCTT  917

seq1  ATCTCATAGTAAAAGACATTTCCTGTTTAAAGTGATTAATTCTCACTGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATAGTAAAAGACATTTCCTGTTTAAAGTGATTAATTCTCACTGTT  967

seq1  TTCTGATAATGGCTCTAAAAATAGTAAAGCCCAGGAAGGTGTTTCAACAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATAATGGCTCTAAAAATAGTAAAGCCCAGGAAGGTGTTTCAACAT  1017

seq1  CTCTACCATGTCTACCATGGTTTTTAATTTTCCTCTTGTCTTTAATTTGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCATGTCTACCATGGTTTTTAATTTTCCTCTTGTCTTTAATTTGC  1067

seq1  CAAAGTAACTTATAAATAAAGAGATGTGAATTC  1132
      |||||||||||||||||||||||||||||||||
seq2  CAAAGTAACTTATAAATAAAGAGATGTGAATTC  1100

seq1: chr12_80324142_80324276
seq2: B6Ng01-090F03.g_214_342 (reverse)

seq1  ATATGGGCACAGGGGAAATTTTCCTGACCAGAACAACAATGGCTTGTGCT  50
      ||||||||||||||||||  ||||||    ||||  ||||||||||| ||
seq2  ATATGGGCACAGGGGAAAAATTCCTG----GAAC--CAATGGCTTGTACT  44

seq1  GTAAGATCAAGAATCGACAAATGGGACCTCATAAAATTGCAAAGCTTCTG  100
       ||||||||| ||| |||||||| ||||||||||||||||||||||||||
seq2  CTAAGATCAAAAATTGACAAATGAGACCTCATAAAATTGCAAAGCTTCTG  94

seq1  TAAGACAAAAGACACTGTCAATAAGACAAAAAGGC  135
      |||| ||||  ||||||||||||||||||||||||
seq2  TAAGGCAAAGAACACTGTCAATAAGACAAAAAGGC  129