BAC Information

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BAC

Clone NameB6Ng01-091E20
Chromosome10 (Build37)
Map Location 33,597,827 - 33,740,706
singlet/doubletdoublet
Overlap geneSult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1
Upstream geneTcba1, EG667761, Trdn, A330019N05Rik, LOC100040686, EG215895, LOC100041399
Downstream gene4732454E20Rik, BB146404, A630077B13Rik, Dse, Tspyl1, Tspyl4, Nt5dc1, Col10a1, Frk, LOC667824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091E20.bB6Ng01-091E20.g
ACCDH903362DH903363
length1,0531,120
definitionDH903362|Mus musculus domesticus DNA, BAC clone: B6Ng01-091E20, 5' end.DH903363|Mus musculus domesticus DNA, BAC clone: B6Ng01-091E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,597,827 - 33,598,893)(33,739,576 - 33,740,706)
sequence
gaattcacattcctcttgtctctgcagcacacccctgcctatgtttgtaa
tttgaagatgaggtttaaagtgtttccctgtgtatgagggtttttttcca
ttataaaaattagaataatattttaataattatatctgctataaattgaa
taaatcaaaaacaatatgctttaccacaaactcattataagccacgtgat
gtggataagaatgtcattttcccttgtaatatctttgaacatcagctcat
attttagtatctctggatttttatattttttcagaaactcttcttgtgtg
tctctttttgccactgaatgtcaactctcacatctcattctcaacaagac
caaatgtcttgcccaggataggttgtcatctgtcccaaatgcaaataata
atttaatattgtcatctctgacagctgaaaatccaaaatggctatttgcc
ttttaaatgatatagtgattattccaaattctgttttgttttgttctgtt
ttgttctgttttgttctgttttgttctgttttgttctgttctgttctgtt
ctgttctgttctgttctgttctgttctgttctgttctgttctgttctgtt
ctgttttgtcaagatggggtttctctgtgtagccctggctgtcctggaac
tcactctgcagaccacgctggccttgaactcagagagatctacctgcctc
tgccttgcaagtgctgggtttaaaggcatgtgccactaccaacttgctat
tccaaattcttctccagtaaaattataacatccgctgttctgataccctg
tgtcactttgattttacttgctaaaacatttagaattcattttttgtgtt
tggaaaaaaaaagcctcacatctatctcaaagtttgtgttgaagtatgag
tgttttcttaatacaatgattgatagatggcaaatgtagctttaaattct
aatgtattttttactactaaggattttcttctaaaattgatatgatagta
gtagtagtagtgaatctattactatgctcttaactggttattactgatca
gta
gaattcctttgaataaacaaatatgcagcttatatctgaaatgctacctc
atctcagaagtttccttttctcccctttaaagtttaaaagaaggcaaaaa
gcaacccttaatctatttaaaacaagaaaccataatacttttgacataat
gcatttcctttactgtaagtaaggaatacttgctaattaaacacaaaaca
aaaaactctttctgtgtaactggagcactgtggctcacacctacaatctc
agcaccactgaggccagggtaggggtaacacgagttctggcaatcctggc
tagtaagcaagatacaagcaagcaacagcaacaatcaccacaaagccaaa
gccaaaaaagcccatctatggaacctgcataatacaagtaaagccagctt
taatacacaaggaaggtagagaaatttggggaaacatttttagtatgttt
ggggtattcttcccgaggtacatttccccacattttgtttaggctagtac
gtgttcctttattataaacaaatataaaccaagtaactatttagtgttca
ttaaaaaagaagacatatttatctgttttcttagttttgccgttacggca
tttgacattttggttgtagtgatagacttgaagctgtcaaatctatcagc
agaagtagagctaaatcaaaggtattattttccggtatcttattgtagtt
ttggcaaagtcaaatctgtcactaagatccgcccctttatctgttcgctg
aaataacaactgaacaagtctttaggtcaatttttccgcctcacttattt
cacaactttaaagtgaggtgcaagaacctctggttcgactttcagccttc
ctcccgggttcctcctgggacagacctctggacgaaccccgaccccaagt
cccagctcggcttccaggagtctgcacagatcagccattgaaagttccaa
gaagccgggctggctgtcgcccacaggctgctctgggcgacaaacgtggt
ttaggaacgcggaaagcgagccctggacctcgcgctccgcctcggcgcca
ctacacgccctgccgagactcagacagaccatcgagcgcagaattggcga
tcctctctgccaggcgtctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_33597827_33598893
seq2: B6Ng01-091E20.b_45_1097

seq1  GAATTCACATTCCTCTTGTCTCTGCAGCACACCCCTGCCTATGTTTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTCCTCTTGTCTCTGCAGCACACCCCTGCCTATGTTTGTAA  50

seq1  TTTGAAGATGAGGTTTAAAGTGTTTCCCTGTGTATGAGGGTTTTTTTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGATGAGGTTTAAAGTGTTTCCCTGTGTATGAGGGTTTTTTTCCA  100

seq1  TTATAAAAATTAGAATAATATTTTAATAATTATATCTGCTATAAATTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAAATTAGAATAATATTTTAATAATTATATCTGCTATAAATTGAA  150

seq1  TAAATCAAAAACAATATGCTTTACCACAAACTCATTATAAGCCACGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCAAAAACAATATGCTTTACCACAAACTCATTATAAGCCACGTGAT  200

seq1  GTGGATAAGAATGTCATTTTCCCTTGTAATATCTTTGAACATCAGCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATAAGAATGTCATTTTCCCTTGTAATATCTTTGAACATCAGCTCAT  250

seq1  ATTTTAGTATCTCTGGATTTTTATATTTTTTCAGAAACTCTTCTTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGTATCTCTGGATTTTTATATTTTTTCAGAAACTCTTCTTGTGTG  300

seq1  TCTCTTTTTGCCACTGAATGTCAACTCTCACATCTCATTCTCAACAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTTGCCACTGAATGTCAACTCTCACATCTCATTCTCAACAAGAC  350

seq1  CAAATGTCTTGCCCAGGATAGGTTGTCATCTGTCCCAAATGCAAATAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTCTTGCCCAGGATAGGTTGTCATCTGTCCCAAATGCAAATAATA  400

seq1  ATTTAATATTGTCATCTCTGACAGCTGAAAATCCAAAATGGCTATTTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATATTGTCATCTCTGACAGCTGAAAATCCAAAATGGCTATTTGCC  450

seq1  TTTTAAATGATATAGTGATTATTCCAAATTCTGTTTTGTTTTGTTCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATGATATAGTGATTATTCCAAATTCTGTTTTGTTTTGTTCTGTT  500

seq1  TTGTTCTGTTTTGTTCTGTTTTGTTCTGTTT-----TGTTCTGTTCTGTT  545
      |||||||||||||||||||||||||||||||     ||||||||||||||
seq2  TTGTTCTGTTTTGTTCTGTTTTGTTCTGTTTTGTTCTGTTCTGTTCTGTT  550

seq1  CTGTTCTGTTCTGTTCTGTTCTGTTCTGTTCTGTTCTGTTCTGTTCTGTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTGTTCTGTTCTGTTCTGTTCTGTTCTGTTCTGTTCTGTTCTGTT  600

seq1  CTGTTTTGTCAAGATGGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGTCAAGATGGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAAC  650

seq1  TCACTCTGCAGACCACGCTGGCCTTGAACTCAGAGAGATCTACCTGCCTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTGCAGACCACGCTGGCCTTGAACTCAGAGAGATCTACCTGCCTC  700

seq1  TGCCTTGCAAGTGCTGGGTTTAAAGGCATGTGCCACTACCAACTTGCTAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGCAAGTGCTGGGTTTAAAGGCATGTGCCACTACCAACTTGCTAT  750

seq1  TCCAAATTCTTCTCCAGTAAAATTATAACATCCGCTGTTCTGATACCCTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATTCTTCTCCAGTAAAATTATAACATCCGCTGTTCTGATACCCTG  800

seq1  TGTCACTTTGATTTTACTTGCTAAAACATTTAGAATTCATTTTTTGTGTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTTGATTTTACTTGCTAAAACATTTAGAATTCATTTTTTGTGTT  850

seq1  TGGAAAAAAAAAGCCTCACATCTATCTCAAAAGTTTGTGTTTGAAGTATG  895
      |||||||||||||||||||||||||||| |||||||||| ||||||||||
seq2  TGGAAAAAAAAAGCCTCACATCTATCTC-AAAGTTTGTG-TTGAAGTATG  898

seq1  AGTGTTTTCTTAATACAATGATTGATAGATGGCAAAATGTAGCTTTAAAA  945
      ||||||||||||||||||||||||||||||||| |||||||||||| |||
seq2  AGTGTTTTCTTAATACAATGATTGATAGATGGC-AAATGTAGCTTT-AAA  946

seq1  TTCTAATGTATTTTTTACCTACTAAAGGATTTTTCTTTCTAAAAATTGAT  995
      ||||||||||||||||| ||||| |||||||||   |||| |||||||| 
seq2  TTCTAATGTATTTTTTA-CTACT-AAGGATTTT--CTTCT-AAAATTGA-  990

seq1  TATGATTAGGTAGTAGTAGTTAGTGATATCTATTTACTATGCTCCTAAAC  1045
      ||||||   |||||||||| |||||| ||||| |||||||||| || |||
seq2  TATGAT--AGTAGTAGTAG-TAGTGA-ATCTA-TTACTATGCT-CTTAAC  1034

seq1  TGGTTTATTTTACTGATCAGTA  1067
      ||||   | |||||||||||||
seq2  TGGT---TATTACTGATCAGTA  1053

seq1: chr10_33739576_33740706
seq2: B6Ng01-091E20.g_67_1186 (reverse)

seq1  GAGACGCCTGGCAGAGAGGCATCGCC-ATTCTGCGCTCGATGTGTCTGGT  49
      ||||||||||||||||||| |||||| ||||||||||||||| |||| ||
seq2  GAGACGCCTGGCAGAGAGG-ATCGCCAATTCTGCGCTCGATG-GTCT-GT  47

seq1  CTGAGTCTCGCGCAGGGCGTGGTAGTGGCGCCGAGGGCGGGGCGCGGAGG  99
      |||||||||| ||||||||| ||||||||||||| ||||| |||| ||||
seq2  CTGAGTCTCG-GCAGGGCGT-GTAGTGGCGCCGA-GGCGGAGCGC-GAGG  93

seq1  TCCAAGGGCTTCCGCTTTTCCGCGTTCCTAAACCACGTTTGTCGCCCAGA  149
      ||| ||||||  ||| ||||||||||||||||||||||||||||||||||
seq2  TCC-AGGGCT--CGC-TTTCCGCGTTCCTAAACCACGTTTGTCGCCCAGA  139

seq1  GCAGCCTGTGGGCGACAGCCAGCCCGGCTTCTTGGAACTTTCAATGGCCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCAGCCTGTGGGCGACAGCCAGCCCGGCTTCTTGGAACTTTCAATGG-CT  188

seq1  GATCTGTGCAGACTCCTGGAAGCCGAGCTGGGACTTGGGGTCGGGGTTCG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTGCAGACTCCTGGAAGCCGAGCTGGGACTTGGGGTCGGGGTTCG  238

seq1  TCCAGAGGTCTGTCCCAGGAGGAACCCGGGAGGAAGGCTGAAAGTCGAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGGTCTGTCCCAGGAGGAACCCGGGAGGAAGGCTGAAAGTCGAAC  288

seq1  CAGAGGTTCTTGCACCTCACTTTAAAGTTGTGAAATAAGTGAGGCGGAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTTCTTGCACCTCACTTTAAAGTTGTGAAATAAGTGAGGCGGAAA  338

seq1  AATTGACCTAAAGACTTGTTCAGTTGTTATTTCAGCGAACAGATAAAGGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGACCTAAAGACTTGTTCAGTTGTTATTTCAGCGAACAGATAAAGGG  388

seq1  GCGGATCTTAGTGACAGATTTGACTTTGCCAAAACTACAATAAGATACCG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGATCTTAGTGACAGATTTGACTTTGCCAAAACTACAATAAGATACCG  438

seq1  GAAAATAATACCTTTGATTTAGCTCTACTTCTGCTGATAGATTTGACAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAATACCTTTGATTTAGCTCTACTTCTGCTGATAGATTTGACAGC  488

seq1  TTCAAGTCTATCACTACAACCAAAATGTCAAATGCCGTAACGGCAAAACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTCTATCACTACAACCAAAATGTCAAATGCCGTAACGGCAAAACT  538

seq1  AAGAAAACAGATAAATATGTCTTCTTTTTTAATGAACACTAAATAGTTAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACAGATAAATATGTCTTCTTTTTTAATGAACACTAAATAGTTAC  588

seq1  TTGGTTTATATTTGTTTATAATAAAGGAACACGTACTAGCCTAAACAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTATATTTGTTTATAATAAAGGAACACGTACTAGCCTAAACAAAA  638

seq1  TGTGGGGAAATGTACCTCGGGAAGAATACCCCAAACATACTAAAAATGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGAAATGTACCTCGGGAAGAATACCCCAAACATACTAAAAATGTT  688

seq1  TCCCCAAATTTCTCTACCTTCCTTGTGTATTAAAGCTGGCTTTACTTGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAATTTCTCTACCTTCCTTGTGTATTAAAGCTGGCTTTACTTGTA  738

seq1  TTATGCAGGTTCCATAGATGGGCTTTTTTGGCTTTGGCTTTGTGGTGATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCAGGTTCCATAGATGGGCTTTTTTGGCTTTGGCTTTGTGGTGATT  788

seq1  GTTGCTGTTGCTTGCTTGTATCTTGCTTACTAGCCAGGATTGCCAGAACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTTGCTTGCTTGTATCTTGCTTACTAGCCAGGATTGCCAGAACT  838

seq1  CGTGTTACCCCTACCCTGGCCTCAGTGGTGCTGAGATTGTAGGTGTGAGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTACCCCTACCCTGGCCTCAGTGGTGCTGAGATTGTAGGTGTGAGC  888

seq1  CACAGTGCTCCAGTTACACAGAAAGAGTTTTTTGTTTTGTGTTTAATTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGCTCCAGTTACACAGAAAGAGTTTTTTGTTTTGTGTTTAATTAG  938

seq1  CAAGTATTCCTTACTTACAGTAAAGGAAATGCATTATGTCAAAAGTATTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATTCCTTACTTACAGTAAAGGAAATGCATTATGTCAAAAGTATTA  988

seq1  TGGTTTCTTGTTTTAAATAGATTAAGGGTTGCTTTTTGCCTTCTTTTAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTTGTTTTAAATAGATTAAGGGTTGCTTTTTGCCTTCTTTTAAA  1038

seq1  CTTTAAAGGGGAGAAAAGGAAACTTCTGAGATGAGGTAGCATTTCAGATA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGGGGAGAAAAGGAAACTTCTGAGATGAGGTAGCATTTCAGATA  1088

seq1  TAAGCTGCATATTTGTTTATTCAAAGGAATTC  1131
      ||||||||||||||||||||||||||||||||
seq2  TAAGCTGCATATTTGTTTATTCAAAGGAATTC  1120