BAC Information

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BAC

Clone NameB6Ng01-092D20
Chromosome3 (Build37)10 (Build37)
Map Location 157,174,002 - 157,174,917104,053,971 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene4930570G19Rik, Negr1, LOC100041152, LOC668853, LOC546818
Downstream geneZranb2, Ptger3, LOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40, Lrrc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092D20.bB6Ng01-092D20.g
ACCDH904056DH904057
length922844
definitionDH904056|Mus musculus domesticus DNA, BAC clone: B6Ng01-092D20, 5' end.DH904057|Mus musculus domesticus DNA, BAC clone: B6Ng01-092D20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(157,174,002 - 157,174,917)(104,053,971 - 104,054,363)
sequence
gaattcaaaatctcagtcattttctaaacttagctctcaagtaagtatgg
cttagtaagttcccactgctctagggcaggttcctcatgaatgaattttt
atcccatcctccaccacaagtaagaggaagtctaaagctctatcacagta
tagacaactaggaaatgctccttagtgcatatctataactatatctatat
ctatctatatctagatagatagatagatagatagatagatagatagatag
atagatagatagatagatagacaaagttgtgtgagaacctgattagttag
tgtgcagtcaaggctttacgtcaagcaacagacctgctaagtagtaaata
tgaactaaagaggaataggcagagtgtacaagaggatgtttctagaatag
agactagttttacatgttttagagtgaaaagaaagttgtaaaaagacaga
aactgagcacataataaatggtataatttcagggcaatttctagctggga
agattgggaacaaagtcaagagagcagagggacgatgtcaagatgacaga
agatatcaatgataagagctgtaagccctctcagaggaggcaaggaggtc
aagcacagcttgttacaatggtgaagttagcaaggagagaaaggaacagg
acagaacggtgagagcaaacaaccttcgggcagagatctaaaggaaagta
tgtaatgctaagtgcctcaatgaggttgaaaaatgatctgtgaaacacaa
agcttaaaatgtagtgagattgtaggtcccgcacaggaaaggggacaggg
atctgaaaagacctgaaaaatgttcaagagtacaagagaggcaggacaga
gtaagccagcacagggctatctacagtaaaaacttgctttaccagtactc
aatgcctgcttgaggaatagaa
gaattctcacctgaggaataccgaatggctgagaagcacctgaaacaatg
ttcaacatccctaatcatcggggaacaacctgagattcaaaacaaccttg
agattccacgtcacagcactcaaaagatcaaaaattcagatgacagcaga
tgctggcaaggatgtggagaaagaggaacactcctccattgctggtgggt
ttgcaagcttgtacagccactctggaaatcagtctcgtggttcctcagaa
aattggacatagtactactggaggatccagcaatacctctcctgggcata
tacccagaagatgttccaacttgcaataaggacacatgctccactatgtt
catagcagccttatttataatagccagaagctgaaaagaaaacttagcaa
tttaaaactaatgaactgtattgagagatgggtaggcatctctgtgatgg
atgaacaaagctccttggactagcatttttttttttatttttgattcttt
tttttgttttttcgttttatttgtttttgtttttgtttttttttttgttt
gtttgtttttcgagacacggtttctctgtgtagtcctggctgtcctggaa
ctcactctgtagaccaggctggccttgaactcagaaatctgcctgcctct
gtctcccaagttctgggattaaaggcatgtgccaccacttcccggtggac
taacattttgtagtgcatattgcttgtgcctgctggcaaagtctatgtgt
tactgtttatgcctaaagggaactcttttttcctcttcatgctgcttctt
tcagtttgctgcccaagtgctgcctcttgggtagggcagacctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_157174002_157174917
seq2: B6Ng01-092D20.b_41_962

seq1  GAATTCAAAATCTCAGTCATTTTCTAAACTTAGCTCTCAAGTAAGTATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATCTCAGTCATTTTCTAAACTTAGCTCTCAAGTAAGTATGG  50

seq1  CTTAGTAAGTTCCCACTGCTCTAGGGCAGGTTCCTCATGAATGAATTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTAAGTTCCCACTGCTCTAGGGCAGGTTCCTCATGAATGAATTTTT  100

seq1  ATCCCATCCTCCACCACAAGTAAGAGGAAGTCTAAAGCTCTATCACAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATCCTCCACCACAAGTAAGAGGAAGTCTAAAGCTCTATCACAGTA  150

seq1  TAGACAACTAGGAAATGCTCCTTAGTGCATATCTATAACTATATCTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAACTAGGAAATGCTCCTTAGTGCATATCTATAACTATATCTATAT  200

seq1  CTATCTATATC----TAGATAGATAGATAGATAGATAGATAGATAGATAG  246
      |||||||||||    |||||||||||||||||||||||||||||||||||
seq2  CTATCTATATCTAGATAGATAGATAGATAGATAGATAGATAGATAGATAG  250

seq1  ATAGATAGATAGATAGATAGACAAAGTTGTGTGAGAACCTGATTAGTTAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAGATAGATAGATAGACAAAGTTGTGTGAGAACCTGATTAGTTAG  300

seq1  TGTGCAGTCAAGGCTTTACGTCAAGCAACAGACCTGCTAAGTAGTAAATA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGTCAAGGCTTTACGTCAAGCAACAGACCTGCTAAGTAGTAAATA  350

seq1  TGAACTAAAGAGGAATAGGCAGAGTGTACAAGAGGATGTTTCTAGAATAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTAAAGAGGAATAGGCAGAGTGTACAAGAGGATGTTTCTAGAATAG  400

seq1  AGACTAGTTTTACATGTTTTAGAGTGAAAAGAAAGTTGTAAAAAGACAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGTTTTACATGTTTTAGAGTGAAAAGAAAGTTGTAAAAAGACAGA  450

seq1  AACTGAGCACATAATAAATGGTATAATTTCAGGGCAATTTCTAGCTGGGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGCACATAATAAATGGTATAATTTCAGGGCAATTTCTAGCTGGGA  500

seq1  AGATTGGGAACAAAGTCAAGAGAGCAGAGGGACGATGTCAAGATGACAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGGGAACAAAGTCAAGAGAGCAGAGGGACGATGTCAAGATGACAGA  550

seq1  AGATATCAATGATAAGAGCTGTAAGCCCTCTCAGAGGAGGCAAGGAGGTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCAATGATAAGAGCTGTAAGCCCTCTCAGAGGAGGCAAGGAGGTC  600

seq1  AAGCACAGCTTGTTACAATGGTGAAGTTAGCAAGGAGAGAAAGGAACAGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAGCTTGTTACAATGGTGAAGTTAGCAAGGAGAGAAAGGAACAGG  650

seq1  ACAGAACGGTGAGAGCAAACAACCTTCGGGCAGAGATCTAAAGGAAAGTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACGGTGAGAGCAAACAACCTTCGGGCAGAGATCTAAAGGAAAGTA  700

seq1  TGTAATGCTAAGTGCCTCAATGAGGTTGAAAAATGATCTGTGAAACACAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGCTAAGTGCCTCAATGAGGTTGAAAAATGATCTGTGAAACACAA  750

seq1  AGCTTAAAATGTAGTGAGATTGTAGGT-CCGCACAGGAAA-GGGACAGGG  794
      ||||||||||||||||||||||||||| |||||||||||| |||||||||
seq2  AGCTTAAAATGTAGTGAGATTGTAGGTCCCGCACAGGAAAGGGGACAGGG  800

seq1  ATCTGAAAAGACCTG-AAAATGTTCAAGAGTACAAGAGAGGCAGGACAGA  843
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATCTGAAAAGACCTGAAAAATGTTCAAGAGTACAAGAGAGGCAGGACAGA  850

seq1  GTAAAGCCAGCACA-GGCTATCCACAGTAAAAACTTGCTCTACCAGTACT  892
      || ||||||||||| ||||||| |||||||||||||||| ||||||||||
seq2  GT-AAGCCAGCACAGGGCTATCTACAGTAAAAACTTGCTTTACCAGTACT  899

seq1  CAATGCCTGCTTTGAGGATTAGAA  916
      |||||||||| ||||||| |||||
seq2  CAATGCCTGC-TTGAGGAATAGAA  922

seq1: chr10_104053971_104054363
seq2: B6Ng01-092D20.g_68_457 (reverse)

seq1  TTCTTTCCAGCTCCTGGCTATTATAAATAAGGCTGCTATGAATATAGTGG  50
      |||||| ||||| ||||||||||||||||||||||||||||| |||||||
seq2  TTCTTTTCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGG  50

seq1  AGCATGTGTCCTTCTTACCGGTTGGGGCATCTTCTGGATATATGCCCAGA  100
      ||||||||||||| || |  |||||  |||||||||| ||||||||||| 
seq2  AGCATGTGTCCTTATTGCAAGTTGGAACATCTTCTGGGTATATGCCCAGG  100

seq1  AGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTTCTGACGAA  150
      ||||||||||||||||||||| |||||||||||||||||||||||| |||
seq2  AGAGGTATTGCTGGATCCTCCAGTAGTACTATGTCCAATTTTCTGAGGAA  150

seq1  CCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCAAC  200
      || | |||| |||||||||||||| ||||||||| ||||| ||||||| |
seq2  CCACGAGACTGATTTCCAGAGTGGCTGTACAAGCTTGCAAACCCACCAGC  200

seq1  AATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCA  250
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AATGGAGGAGTGTTCCTCTTTCTCCACATCCTTGCCAGCATCTGCTGTCA  250

seq1  CCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAG  300
       ||||||||||||||       || ||| || ||||| ||||||||||| 
seq2  TCTGAATTTTTGATC-------TTTTGAGTGCTGTGACGTGGAATCTCAA  293

seq1  GGTTGTTTTGATTTGCA----TTTCCCTGATGATTAAGGATGTTGAACAT  346
      ||||||||||| |  ||     ||||| |||||||| |||||||||||||
seq2  GGTTGTTTTGAATCTCAGGTTGTTCCCCGATGATTAGGGATGTTGAACAT  343

seq1  TTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTC  393
      | ||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGTTTCAGGTGCTTCTCAGCCATTCGGTATTCCTCAGGTGAGAATTC  390