BAC Information

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BAC

Clone NameB6Ng01-092L03
Chromosome10 (Build37)
Map Location 92,854,231 - 93,010,215
singlet/doubletdoublet
Overlap geneLta4h, Hal, Amdhd1, Ccdc38
Upstream geneLOC216229, LOC100041814, Nedd1, Gm872, 4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854
Downstream geneSnrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12, EG215472, LOC100041955, Tmcc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092L03.bB6Ng01-092L03.g
ACCDH904383DH904384
length1,054999
definitionDH904383|Mus musculus domesticus DNA, BAC clone: B6Ng01-092L03, 5' end.DH904384|Mus musculus domesticus DNA, BAC clone: B6Ng01-092L03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,009,158 - 93,010,215)(92,854,231 - 92,855,240)
sequence
gaattcaccatgtagaccaacctggccttgaactcagagatttgcctgcc
tctgcagggatcaaaggagcacacccccacacatggccgctagttgtatt
caagatagaccataaacccatgatcctttaattagctctgtaaagacccc
ttttgaaaatatgttcttattttcaggttctgggtagactgatctttggg
ggcagtattgatattgtatcccctgaatagcaccttatacccaacaatga
atatgggaatctaccctttagcctcctgcctgatccttctgcaggtctag
ggcaaggcaacccttgggcctacaatctacagcttgccagtttgacaaga
gtcattggctgaatccaggttgctccaggctcatatgtatctccctctag
ggtgtggagagtcacatcatggctgataagcaaccttttcagtgcatccc
cattagtgtcccatggaagctgggaatagcgccacaaaccccctggcttg
aagttctaggggtcaggagcctgaaaatgagtcttctgacaatgaccccc
cccccaaaatgggggggtgtttctctggaggctctagggagaaactgctt
acgtcttctgctgttagagcacgcctacgtgccctgacttgcagcctctt
cgttgatatacagaataaatctgtcctctgtctccgtggtcacactggct
tccctgtctaagacacacctgcttccaccttgttcagacttttaggtgat
cccaggcccgtcagataatacagaatattctttccatatcaggctcctta
acttaatcacactttaaaaggtctattttgtgtaacatattcacaggctc
caaggaatacaatgtatgtatattgtactattactattactatgtactaa
taggggactattactcaacctgtgacacatagactcctttcttagcttct
tagctttgcccctttctgttttcctggtctaattattcattccataaaca
tgcaggaagggccttggcttacattggggaatgcgcattagtaacaaaaa
cagg
gaattctgcttccggctctgggtccagcccaaaggctcctccctggcttg
ggggaagattgagccttgctaaaaggcatcctgcagcagtcccttttcct
gtcagatggactgctttgtgtatgcacttttctgtagcagtagattgctc
cctgtgggttacgctcccagccaccctccagagccctctgggttttcaaa
tggaaaacacacacacacaaacacacacacacacacacacacacacacac
acacacacacacacacacacacacacacaccagttaattctgttagcaaa
cactctccttcagcactcctgagttaacatcttttaaaatttagatttca
tctctgctagcccaggcccaatcagggaagtgacccatggccacttaccc
tgattcttacatgtcagtggtctggtctttcttctcctctgtcatgttga
ttctcctccttcctctctcccagttcttagcctgtacaaatctaaaggtc
ctgcctcctacctgcccagccattagctgttggcatctttatttcccaat
caaaaccaattgggcacaggcacctacagtgtcttacaaacaaacaaacc
tgagaattaatttctttctttccttctttctttctttctttctttctttc
tttctttctttctttctttctttcttttttttttttttgttttttttttt
gtttttttgagacagggtttctctgtatagccctggctgtcctggaactc
actttgtagaccaggtggccttgaactcagaaatccacctgcttctgcct
cccgagtgctgagattaaaggcatgtgccaccatgctctgccaaacctgg
gaatatctatgtagtttggaaatctattaatcagtcccctctctagcttg
tttgcctttggtatctctgtaacattagctgtggcatcttatttcccaat
caaccaactgggcaccagggacctgcagtgtcttaaaaacaccgggaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_93009158_93010215
seq2: B6Ng01-092L03.b_47_1100 (reverse)

seq1  CCTGTTTTGTTTACTAATGCGCATTCCCCAATGTATAGCCAAGGCCCTTC  50
      ||||||||  ||||||||||||||||||||||||| ||||||||||||||
seq2  CCTGTTTTTGTTACTAATGCGCATTCCCCAATGTA-AGCCAAGGCCCTTC  49

seq1  CTGCATGTTTATGGAATGAATAAATTAGAACCAGGAAAACAGAAAGGGGC  100
      ||||||||||||||||||||| |||||| |||||||||||||||||||||
seq2  CTGCATGTTTATGGAATGAAT-AATTAG-ACCAGGAAAACAGAAAGGGGC  97

seq1  AAAGCTAAGAAAGCTAAGAAAGGAGTCTATGTGTCACAGGTTGAGTAATA  150
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAAG-AAGCTAAGAAAGGAGTCTATGTGTCACAGGTTGAGTAATA  146

seq1  GTCCCCTATTAGTACATAGTAATAGTAATAGTACAATATACATACATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTATTAGTACATAGTAATAGTAATAGTACAATATACATACATTGT  196

seq1  ATTCCTTGGAGCCTGTGAATATGTTACACAAAATAGACCTTTTAAAGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTGGAGCCTGTGAATATGTTACACAAAATAGACCTTTTAAAGTGT  246

seq1  GATTAAGTTAAGGAGCCTGATATGGAAAGAATATTCTGTATTATCTGACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAGTTAAGGAGCCTGATATGGAAAGAATATTCTGTATTATCTGACG  296

seq1  GGCCTGGGATCACCTAAAAGTCTGAACAAGGTGGAAGCAGGTGTGTCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGGATCACCTAAAAGTCTGAACAAGGTGGAAGCAGGTGTGTCTTA  346

seq1  GACAGGGAAGCCAGTGTGACCACGGAGACAGAGGACAGATTTATTCTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGAAGCCAGTGTGACCACGGAGACAGAGGACAGATTTATTCTGTA  396

seq1  TATCAACGAAGAGGCTGCAAGTCAGGGCACGTAGGCGTGCTCTAACAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAACGAAGAGGCTGCAAGTCAGGGCACGTAGGCGTGCTCTAACAGCA  446

seq1  GAAGACGTAAGCAGTTTCTCCCTAGAGCCTCCAGAGAAACACCCCCCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACGTAAGCAGTTTCTCCCTAGAGCCTCCAGAGAAACACCCCCCCAT  496

seq1  TTTGGGGGGGGGGTCATTGTCAGAAGACTCATTTTCAGGCTCCTGACCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGGGGGGGTCATTGTCAGAAGACTCATTTTCAGGCTCCTGACCCC  546

seq1  TAGAACTTCAAGCCAGGGGGTTTGTGGCGCTATTCCCAGCTTCCATGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTTCAAGCCAGGGGGTTTGTGGCGCTATTCCCAGCTTCCATGGGA  596

seq1  CACTAATGGGGATGCACTGAAAAGGTTGCTTATCAGCCATGATGTGACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATGGGGATGCACTGAAAAGGTTGCTTATCAGCCATGATGTGACTC  646

seq1  TCCACACCCTAGAGGGAGATACATATGAGCCTGGAGCAACCTGGATTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACCCTAGAGGGAGATACATATGAGCCTGGAGCAACCTGGATTCAG  696

seq1  CCAATGACTCTTGTCAAACTGGCAAGCTGTAGATTGTAGGCCCAAGGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGACTCTTGTCAAACTGGCAAGCTGTAGATTGTAGGCCCAAGGGTT  746

seq1  GCCTTGCCCTAGACCTGCAGAAGGATCAGGCAGGAGGCTAAAGGGTAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGCCCTAGACCTGCAGAAGGATCAGGCAGGAGGCTAAAGGGTAGAT  796

seq1  TCCCATATTCATTGTTGGGTATAAGGTGCTATTCAGGGGATACAATATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATATTCATTGTTGGGTATAAGGTGCTATTCAGGGGATACAATATCA  846

seq1  ATACTGCCCCCAAAGATCAGTCTACCCAGAACCTGAAAATAAGAACATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGCCCCCAAAGATCAGTCTACCCAGAACCTGAAAATAAGAACATAT  896

seq1  TTTCAAAAGGGGTCTTTACAGAGCTAATTAAAGGATCATGGGTTTATGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAAGGGGTCTTTACAGAGCTAATTAAAGGATCATGGGTTTATGGT  946

seq1  CTATCTTGAATACAACTAGCGGCCATGTGTGGGGGTGTGCTCCTTTGATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTGAATACAACTAGCGGCCATGTGTGGGGGTGTGCTCCTTTGATC  996

seq1  CCTGCAGAGGCAGGCAAATCTCTGAGTTCAAGGCCAGGTTGGTCTACATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGAGGCAGGCAAATCTCTGAGTTCAAGGCCAGGTTGGTCTACATG  1046

seq1  GTGAATTC  1058
      ||||||||
seq2  GTGAATTC  1054

seq1: chr10_92854231_92855240
seq2: B6Ng01-092L03.g_69_1067

seq1  GAATTCTGCTTCCGGCTCTGGGTCCAGCCCAAAGGCTCCTCCCTGGCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTTCCGGCTCTGGGTCCAGCCCAAAGGCTCCTCCCTGGCTTG  50

seq1  GGGGAAGATTGAGCCTTGCTAAAAGGCATCCTGCAGCAGTCCCTTTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGATTGAGCCTTGCTAAAAGGCATCCTGCAGCAGTCCCTTTTCCT  100

seq1  GTCAGATGGACTGCTTTGTGTATGCACTTTTCTGTAGCAGTAGATTGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATGGACTGCTTTGTGTATGCACTTTTCTGTAGCAGTAGATTGCTC  150

seq1  CCTGTGGGTTACGCTCCCAGCCACCCTCCAGAGCCCTCTGGGTTTTCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGGTTACGCTCCCAGCCACCCTCCAGAGCCCTCTGGGTTTTCAAA  200

seq1  TGGAAAACACACACACACAAACACACACACACACACACACACACACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAACACACACACACAAACACACACACACACACACACACACACACAC  250

seq1  ACACACACACACACACACACACACACACACCAGTTAATTCTGTTAGCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACCAGTTAATTCTGTTAGCAAA  300

seq1  CACTCTCCTTCAGCACTCCTGAGTTAACATCTTTTAAAATTTAGATTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCCTTCAGCACTCCTGAGTTAACATCTTTTAAAATTTAGATTTCA  350

seq1  TCTCTGCTAGCCCAGGCCCAATCAGGGAAGTGACCCATGGCCACTTACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTAGCCCAGGCCCAATCAGGGAAGTGACCCATGGCCACTTACCC  400

seq1  TGATTCTTACATGTCAGTGGTCTGGTCTTTCTTCTCCTCTGTCATGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTTACATGTCAGTGGTCTGGTCTTTCTTCTCCTCTGTCATGTTGA  450

seq1  TTCTCCTCCTTCCTCTCTCCCAGTTCTTAGCCTGTACAAATCTAAAGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCCTTCCTCTCTCCCAGTTCTTAGCCTGTACAAATCTAAAGGTC  500

seq1  CTGCCTCCTACCTGCCCAGCCATTAGCTGTTGGCATCTTTATTTCCCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCTACCTGCCCAGCCATTAGCTGTTGGCATCTTTATTTCCCAAT  550

seq1  CAAAACCAATTGGGCACAGGCACCTACAGTGTCTTACAAACAAACAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCAATTGGGCACAGGCACCTACAGTGTCTTACAAACAAACAAACC  600

seq1  TGAGAATTAATTTCTTTCTTTCCTTCTTTCTTTCTTTCTTTCTTTCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATTAATTTCTTTCTTTCCTTCTTTCTTTCTTTCTTTCTTTCTTTC  650

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTGTTTTTTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTGTTTTTTTTTTT  700

seq1  GTTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTC  750

seq1  ACTTTGTAGACCAGGGTGGCCTTGAACTCAGAAATCCACCTGCTTCTGCC  800
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTAGACCA-GGTGGCCTTGAACTCAGAAATCCACCTGCTTCTGCC  799

seq1  TCCCGAGTGCTGAGATTAAAGGCATGTGCCACCATGCTCTGCCAAACCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAGTGCTGAGATTAAAGGCATGTGCCACCATGCTCTGCCAAACCTG  849

seq1  GGAATTTCTATGTAGTTTGGAAATCTATTAAATCAAGTCCCCTCTCCTAG  900
      ||||| ||||||||||||||||||||||| |||| |||||||||| ||||
seq2  GGAATATCTATGTAGTTTGGAAATCTATT-AATC-AGTCCCCTCT-CTAG  896

seq1  CTTGTTTTGCCTTTGGTATCTCTGTAACATTAGCTGTTGGCATCTTTATT  950
      |||| ||||||||||||||||||||||||||||||| ||||||| |||||
seq2  CTTG-TTTGCCTTTGGTATCTCTGTAACATTAGCTG-TGGCATC-TTATT  943

seq1  TCCCAATCAAAACCAACTGGGCA-CAGGGACCTGCAGTGTCTTACAAACA  999
      ||||||||  ||||||||||||| |||||||||||||||||||| |||||
seq2  TCCCAATC--AACCAACTGGGCACCAGGGACCTGCAGTGTCTTAAAAACA  991

seq1  AACCTGGGAAT  1010
         | ||||||
seq2  ---CCGGGAAT  999