BAC Information

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BAC

Clone NameB6Ng01-092N10
Chromosome10 (Build37)
Map Location 63,928,710 - 64,026,580
singlet/doubletdoublet
Overlap geneCtnna3
Upstream geneLrrtm3
Downstream geneLOC665206, LOC216036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092N10.bB6Ng01-092N10.g
ACCDH904489DH904490
length1,140309
definitionDH904489|Mus musculus domesticus DNA, BAC clone: B6Ng01-092N10, 5' end.DH904490|Mus musculus domesticus DNA, BAC clone: B6Ng01-092N10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,025,432 - 64,026,580)(63,928,710 - 63,929,004)
sequence
gaattctcagtgaatttaacatgtgtatatttcttattattcaatgtcct
atcaagtctgtcatgtttatacaaataaattgctttccaaattgtctacc
tttttattactgatatataatttaatcacaataaggtaatgcagcctata
gcagatggatccctttaagccaaatgagactcaatgtttacataagtgat
caacctttacatcagtccatgtgtacttccttatcacagggatgcaattt
ggctcccagaacctgatgaggtggccctatcactaaggaagctacaacaa
actgattcttctctctccttcctgactctccttctccaggtttccactgg
catgaatgttaagtagtggctaaagaaatattcaattttaacagaattag
ttcagtgggtcatccatactgactgagatatcaagggtgaatcattaaag
agacaaaggaaaatcaaatagtaaattgatactctttaaaaattctttat
ggttacatttctaataaaatatacagcactttttgtattgcaattggctt
tagcaccaatttgctctgagatgggttggaaatgcttccttgatctttat
actgccagtgtctgactagtaggaactgatagagcgagtgctaaataaac
acttgttaattggataaatggattttatggatatgtgtaatgtactcata
taactcaggaaaatataaccacttttgtattgataaaatggaggtttgat
aggaatcacacattttttttattacaaacacaagaatagcaataatattc
ctcagttgagaattctttgtttagctctgtgccccattttttaatgcggt
catttggttttctggagcccatcttcttgagttctttatatatattggat
attagtcccctatctgatttaggattggtaaaatcctttcccaatcggtt
ggtggcctttttgtcttattggacagtgtcttttgccttacagaagcttt
gcagttttatgagggaggaatatcaaatggctgagaagcaccctgaaaat
gttcacatccttatcattcagggaaatgcaaatcaaacacctgagattca
ccctcacactagtcgaatggctagaatcaaatcaagtgac
actgagaagctaatatccctgtttggtcttacatagttttcaaattcaaa
aaaatttaattttgtgaaatgtcaattacagttttatgtcagtattacac
agcagataagaaaccatacagcatagaaaaaagctaggtaatttctatag
aacattttatgtaattatattcaaatcctctaatgaactcagggcatttt
tgtattatatatatatatatatatatatatatgtatatatatatatatat
atatatatataaaaaaatatatatatatatatatatatatatatatatat
atatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_64025432_64026580
seq2: B6Ng01-092N10.b_47_1186 (reverse)

seq1  GTCACTTGAATTTTTGATCTTAGCCATTCTGACTAGTGTGAGGTGGAATC  50
      |||||||||   ||||||  ||||||||| |||||||||||||  |||||
seq2  GTCACTTGA---TTTGATTCTAGCCATTC-GACTAGTGTGAGGGTGAATC  46

seq1  TCAGGGTTGTTTTGATTTGCATTTCCCTG-ATGATTAAGGATGTTGAACA  99
      |||||  || ||||||||||||||||||| |||| |||||||| ||||||
seq2  TCAGG--TG-TTTGATTTGCATTTCCCTGAATGA-TAAGGATG-TGAACA  91

seq1  TTTTTTCA-GGTGCTTCTCAGCCATTTGATATTCCTCCCTCATAAAACTG  148
        |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  --TTTTCAGGGTGCTTCTCAGCCATTTGATATTCCTCCCTCATAAAACTG  139

seq1  CAAAGCTTCTGTAAGGCAAAAGACACTGT-CAATAAGACAAAAAGGCCAC  197
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAAAGCTTCTGTAAGGCAAAAGACACTGTCCAATAAGACAAAAAGGCCAC  189

seq1  CAACCGATTGGGAAAGGATTTTTACCAATCCTAAATCAGATAGGGGACTA  247
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAACCGATTGGGAAAGGA-TTTTACCAATCCTAAATCAGATAGGGGACTA  238

seq1  ATATCCAATATATATAAAGAACTCAAGAAGATGGGCTCCAGAAAACCAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAATATATATAAAGAACTCAAGAAGATGGGCTCCAGAAAACCAAA  288

seq1  TGACCGCATTAAAAAATGGGGCACAGAGCTAAACAAAGAATTCTCAACTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCGCATTAAAAAATGGGGCACAGAGCTAAACAAAGAATTCTCAACTG  338

seq1  AGGAATATTATTGCTATTCTTGTGTTTGTAATAAAAAAAATGTGTGATTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATATTATTGCTATTCTTGTGTTTGTAATAAAAAAAATGTGTGATTC  388

seq1  CTATCAAACCTCCATTTTATCAATACAAAAGTGGTTATATTTTCCTGAGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAAACCTCCATTTTATCAATACAAAAGTGGTTATATTTTCCTGAGT  438

seq1  TATATGAGTACATTACACATATCCATAAAATCCATTTATCCAATTAACAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAGTACATTACACATATCCATAAAATCCATTTATCCAATTAACAA  488

seq1  GTGTTTATTTAGCACTCGCTCTATCAGTTCCTACTAGTCAGACACTGGCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTATTTAGCACTCGCTCTATCAGTTCCTACTAGTCAGACACTGGCA  538

seq1  GTATAAAGATCAAGGAAGCATTTCCAACCCATCTCAGAGCAAATTGGTGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAGATCAAGGAAGCATTTCCAACCCATCTCAGAGCAAATTGGTGC  588

seq1  TAAAGCCAATTGCAATACAAAAAGTGCTGTATATTTTATTAGAAATGTAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCAATTGCAATACAAAAAGTGCTGTATATTTTATTAGAAATGTAA  638

seq1  CCATAAAGAATTTTTAAAGAGTATCAATTTACTATTTGATTTTCCTTTGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAGAATTTTTAAAGAGTATCAATTTACTATTTGATTTTCCTTTGT  688

seq1  CTCTTTAATGATTCACCCTTGATATCTCAGTCAGTATGGATGACCCACTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAATGATTCACCCTTGATATCTCAGTCAGTATGGATGACCCACTG  738

seq1  AACTAATTCTGTTAAAATTGAATATTTCTTTAGCCACTACTTAACATTCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATTCTGTTAAAATTGAATATTTCTTTAGCCACTACTTAACATTCA  788

seq1  TGCCAGTGGAAACCTGGAGAAGGAGAGTCAGGAAGGAGAGAGAAGAATCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTGGAAACCTGGAGAAGGAGAGTCAGGAAGGAGAGAGAAGAATCA  838

seq1  GTTTGTTGTAGCTTCCTTAGTGATAGGGCCACCTCATCAGGTTCTGGGAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTGTAGCTTCCTTAGTGATAGGGCCACCTCATCAGGTTCTGGGAG  888

seq1  CCAAATTGCATCCCTGTGATAAGGAAGTACACATGGACTGATGTAAAGGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTGCATCCCTGTGATAAGGAAGTACACATGGACTGATGTAAAGGT  938

seq1  TGATCACTTATGTAAACATTGAGTCTCATTTGGCTTAAAGGGATCCATCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCACTTATGTAAACATTGAGTCTCATTTGGCTTAAAGGGATCCATCT  988

seq1  GCTATAGGCTGCATTACCTTATTGTGATTAAATTATATATCAGTAATAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGGCTGCATTACCTTATTGTGATTAAATTATATATCAGTAATAAA  1038

seq1  AAGGTAGACAATTTGGAAAGCAATTTATTTGTATAAACATGACAGACTTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGACAATTTGGAAAGCAATTTATTTGTATAAACATGACAGACTTG  1088

seq1  ATAGGACATTGAATAATAAGAAATATACACATGTTAAATTCACTGAGAAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGACATTGAATAATAAGAAATATACACATGTTAAATTCACTGAGAAT  1138

seq1  TC  1149
      ||
seq2  TC  1140

seq1: chr10_63928710_63929004
seq2: B6Ng01-092N10.g_69_361

seq1  GAATTCACTGAGAAGCTAATATCCCTGTTTGGTCTTACATAGTTTTCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAGAAGCTAATATCCCTGTTTGGTCTTACATAGTTTTCAAA  50

seq1  TTCAAAAAAATTTAATTTTGTGAAATGTCAATTACAGTTTTATGTCAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAAAATTTAATTTTGTGAAATGTCAATTACAGTTTTATGTCAGTA  100

seq1  TTACACAGCAGATAAGAAACCATACAGCATAGAAAAAAGCTAGGTAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACAGCAGATAAGAAACCATACAGCATAGAAAAAAGCTAGGTAATTT  150

seq1  CTATAGAACATTTTATGTAATTATATTCAAATCCTCTAATGAACTCAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGAACATTTTATGTAATTATATTCAAATCCTCTAATGAACTCAGGG  200

seq1  CATTTTTGTATTATATATATATATATATATATATATGTATATATATATAT  250
      |||||||||||||||||||||||||||||||||||| | |||||||||||
seq2  CATTTTTGTATTATATATATATATATATATATATATATGTATATATATAT  250

seq1  ATATATATATATTATACTTATATAATATATATATATATATATATA  295
      ||||||||||| |||| | | | ||||||||||||||||||||||
seq2  ATATATATATA-TATA-TAAAAAAATATATATATATATATATATA  293