BAC Information

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BAC

Clone NameB6Ng01-093E08
Chromosome8 (Build37)10 (Build37)
Map Location 101,458,088 - 101,459,19021,360,821 - 21,361,206
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041173, EG636915
Downstream geneCdh8, A330008L17Rik, LOC667531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093E08.bB6Ng01-093E08.g
ACCDH904804DH904805
length1,091472
definitionDH904804|Mus musculus domesticus DNA, BAC clone: B6Ng01-093E08, 5' end.DH904805|Mus musculus domesticus DNA, BAC clone: B6Ng01-093E08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(101,458,088 - 101,459,190)(21,360,821 - 21,361,206)
sequence
gaattccactagttctttttttgtttaagatggttttagctattctgggt
tttctttattttcatatgaagctaagattcttctttcaaggtctttgaat
aattttgttgcaagtttagtggctattttattaaatctgtggattgtttt
ctgtaggatgggcattttatgattttctccttaccaattcatgagcatca
gaactatttccatcttcagacatattatatactttaaatgtagaaaaatg
agacacagaacatgtatagacgagaacgaaaatgttgaaaacgtcattga
tgtaatggtattcaacaagtatgaccagtacaagaagctccaacttgata
gttggcagatggaagtttcatgtccatgaaatatgtgaaaagatatatgt
tatcttcaaaaagaatgaaatttgaacatggttctcacattgggatctta
taagaaagtttgatatacagttgataagacaggtaaaaataaaattactg
actacaggtttctaatagactgtatacttcactagtgatttcctgagaaa
attgtcatgtctaattccattgcaaagaacatcatgatgatttaattgtt
cagctaccattaccaaatgtggtaatatttgtatgactataacatacaaa
ccatgctctttacaaagaaaaatcagagagagggggggatataatattct
tggatcttgtttaagattctaattttatcatccagaatttccccaatata
aattttgttattaaattattattatattagtctttaatgtggagataaaa
aatgataaaaccctaatatagactcttagctatggtatgactgactgtta
caatatagcactccttaaggatctttcacagttaacaacgcataatatct
ttcagtacagaaaagtttctattcatgattctggattttccaaattgagt
ttgcttcttgtatcacattttgttttattcacaataggtacaaacacatc
taataatatctacacttttgagaatataagcaaaagggccgatagagtct
gaaatttaagggtactcttcagcagagttcagttgatgttc
ttcttctttctatatttctattattattaagtttgatcttcatagtgttc
cagattttctttgtgttttatgtaaggaattctttagatttaatttgtat
tgtcactgattcatttttttattattatattttcaatgacgagattctct
cttccatctcttgtatttcgtttgcattttcctctgtagattctgtttca
atctctaaatttttcatttccaggatcctttccatttgtgtttctacatt
atttctatttctgtttccagttcttgaacaattttgtttccttcaatggt
ttatttttcttaactttctttaagtgatctattcatttcctccaattgtt
tgtttggtttttttctagcttgcttcaaggcatttattcatttcctcttt
aagaacctctatcatcttcacatagttggttttaagttctttttgtgtgt
gtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_101458088_101459190
seq2: B6Ng01-093E08.b_47_1137

seq1  GAATTCCACTAGTTCTTTTTTTGTTTAAGATGGTTTTAGCTATTCTGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTAGTTCTTTTTTTGTTTAAGATGGTTTTAGCTATTCTGGGT  50

seq1  TTTCTTTATTTTCATATGAAGCTAAGATTCTTCTTTCAAGGTCTTTGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTATTTTCATATGAAGCTAAGATTCTTCTTTCAAGGTCTTTGAAT  100

seq1  AATTTTGTTGCAAGTTTAGTGGCTATTTTATTAAATCTGTGGATTGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTTGCAAGTTTAGTGGCTATTTTATTAAATCTGTGGATTGTTTT  150

seq1  CTGTAGGATGGGCATTTTATGATTTTCTCCTTACCAATTCATGAGCATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGATGGGCATTTTATGATTTTCTCCTTACCAATTCATGAGCATCA  200

seq1  GAACTATTTCCATCTTCAGACATATTATATACTTTAAATGTAGAAAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATTTCCATCTTCAGACATATTATATACTTTAAATGTAGAAAAATG  250

seq1  AGACACAGAACATGTATAGACGAGAACGAAAATGTTGAAAACGTCATTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAGAACATGTATAGACGAGAACGAAAATGTTGAAAACGTCATTGA  300

seq1  TGTAATGGTATTCAACAAGTATGACCAGTACAAGAAGCTCCAACTTGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGGTATTCAACAAGTATGACCAGTACAAGAAGCTCCAACTTGATA  350

seq1  GTTGGCAGATGGAAGTTTCATGTCCATGAAATATGTGAAAAGATATATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCAGATGGAAGTTTCATGTCCATGAAATATGTGAAAAGATATATGT  400

seq1  TATCTTCAAAAAGAATGAAATTTGAACATGGTTCTCACATTGGGATCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCAAAAAGAATGAAATTTGAACATGGTTCTCACATTGGGATCTTA  450

seq1  TAAGAAAGTTTGATATACAGTTGATAAGACAGGTAAAAATAAAATTACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAGTTTGATATACAGTTGATAAGACAGGTAAAAATAAAATTACTG  500

seq1  ACTACAGGTTTCTAATAGACTGTATACTTCACTAGTGATTTCCTGAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGGTTTCTAATAGACTGTATACTTCACTAGTGATTTCCTGAGAAA  550

seq1  ATTGTCATGTCTAATTCCATTGCAAAGAACATCATGATGATTTAATTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCATGTCTAATTCCATTGCAAAGAACATCATGATGATTTAATTGTT  600

seq1  CAGCTACCATTACCAAATGTGGTAATATTTGTATGACTATAACATACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACCATTACCAAATGTGGTAATATTTGTATGACTATAACATACAAA  650

seq1  CCATGCTCTTTACAAAGAAAAATCAGAGAGAGGGGGGGATATAATATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTCTTTACAAAGAAAAATCAGAGAGAGGGGGGGATATAATATTCT  700

seq1  TGGATCTTGTTTAAGATTCTAATTTTATCATCCAGAATTTCCCCAATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTTGTTTAAGATTCTAATTTTATCATCCAGAATTTCCCCAATATA  750

seq1  AATTTTGTTATTAAATTATTATTATATTAGTCTTTAATGTGGAGATAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTTATTAAATTATTATTATATTAGTCTTTAATGTGGAGATAAAA  800

seq1  AATGATAAAACCCTAATATAGACTCTTAGCTATGGTATGACTGACTGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAAAACCCTAATATAGACTCTTAGCTATGGTATGACTGACTGTTA  850

seq1  CAATATAGCACTCCTTAAGGATCTTTCACAGTTAACAACGCATAATATC-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAATATAGCACTCCTTAAGGATCTTTCACAGTTAACAACGCATAATATCT  900

seq1  TTCAGTACAGAAAAAGTTTCTATTCATGATTCTGGATTTTTCCAAATTGA  949
      |||||||||| ||||||||||||||||||||||||| |||||||||||||
seq2  TTCAGTACAG-AAAAGTTTCTATTCATGATTCTGGA-TTTTCCAAATTGA  948

seq1  GTTTGCTTCTTGTATCACATTTTTGTTTTATTCAACAATAGGTACAAACA  999
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  GTTTGCTTCTTGTATCACA-TTTTGTTTTATTC-ACAATAGGTACAAACA  996

seq1  CATCTAATAATATCTAACACTTTTGAGAATATAAGCAAAAAGGGCCGATA  1049
      ||||||||||||||| |||||||||||||||||||| |||||||||||||
seq2  CATCTAATAATATCT-ACACTTTTGAGAATATAAGC-AAAAGGGCCGATA  1044

seq1  GAAGTCTGAAATTTAAGGGTACTGCTTCCTAGCAGAAGGTCAGTTTAGAT  1099
      | ||||||||||||||||||||| ||||  ||||| || ||||||  |||
seq2  G-AGTCTGAAATTTAAGGGTACT-CTTC--AGCAG-AGTTCAGTT--GAT  1087

seq1  GTTC  1103
      ||||
seq2  GTTC  1091

seq1: chr10_21360821_21361206
seq2: B6Ng01-093E08.g_509_546 (reverse)

seq1  ACACACACACACACACACACACATACACACACACATCTTTATCACATACA  50
      ||||||||||||||||||||||| ||||| | | | ||            
seq2  ACACACACACACACACACACACACACACAAAAAGAACT------------  38

seq1  GCCAACCCCTTATATCAAACAAACAAGCAGGGTGGAATTTATTATCTTTT  100
                                                        
seq2  --------------------------------------------------  38

seq1  ATTTTTATTTTATTCTAACAAAATTAATTTTATTTCCATTGCCATTTGGT  150
                                                        
seq2  --------------------------------------------------  38

seq1  AACCCCCACTGGAATAAGATCGTTTTTCTTCATATTGGCAGCCATTGCTT  200
                                                        
seq2  --------------------------------------------------  38

seq1  AACATTCACAAGTAAAATATATTCCACAAAAAATATTTATATATCTTCTG  250
                                                        
seq2  --------------------------------------------------  38

seq1  TGACTTGTAGGTTTTTCTTCCATTTTTAGCAATTTTTAAAAGACTAGTAC  300
                                                        
seq2  --------------------------------------------------  38

seq1  ACTTGAAAATACTAGAAATACATTCATACTATGCTATTAAGTGATAATTT  350
                                                        
seq2  --------------------------------------------------  38

seq1  TGGAAAGGTATGCCATCAGAACACACAAAAAGAACT  386
                                          
seq2  ------------------------------------  38