BAC Information

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BAC

Clone NameB6Ng01-093E15
Chromosome10 (Build37)
Map Location 6,494,022 - 6,612,454
singlet/doubletdoublet
Overlap genenone
Upstream geneEsr1, LOC100041310, Gm221, 1700052N19Rik, Rmnd1, Zbtb2, Akap12, Mthfd1l, Plekhg1
Downstream geneIyd, Ppp1r14c, EG666520, LOC100039303, LOC670558, LOC626333, LOC666541, 9230019H11Rik, LOC100041405, LOC672213, Lrp11, Pcmt1, Nup43, Lats1, Katna1, BC013529, Ppil4, LOC665035, Zc3h12d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093E15.bB6Ng01-093E15.g
ACCDH904818DH904819
length651903
definitionDH904818|Mus musculus domesticus DNA, BAC clone: B6Ng01-093E15, 5' end.DH904819|Mus musculus domesticus DNA, BAC clone: B6Ng01-093E15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,494,022 - 6,494,671)(6,611,558 - 6,612,454)
sequence
gaattctgtcaatatctaaaggtggtactctttgtttttattttaggtgc
atataatagattctacgtgggagtctgggttggatgaagcttccaaggag
tttgtctgataacagtgaaagagactgcgagaatcaggagaaggaagcaa
cattgttgagagtataacaggcaggggaatttggttttgttgctcttctg
aaaaataagccaagatccactggttgcaaatgccagaatcggcacacatt
atattcctgtctcactagtctcttgtcccttttgaaaaacaataggcaga
gtagagacttagaaatggagattttaatcccatcaaaacaaacagggttg
cacaactaggctttgctgcaaggagaaaggaggcctgagaggcctggagg
aacatttgtcagtctggtctccagtcacttcagagggtgtctggaggcac
cagtccaccattagcgtttttttccctagaaaggagaaaagtctggtcct
gtccccaacccgtgtttatatctttctgaactctgaagataaaaatccga
atacactgaggcctctgaggggcttctcagacatagggccctctctgata
tgtgatatcttcccctcaggagctcagggggaggagaggaggggggtaga
a
gaattccaggggagggaaaagctcacctccctcagccaactgcactgtct
gattttaagaaagaaaaggatgaggaggaggaagcgggcaggagctgtga
aaccttttgtccttgtttgaaaacgtactcccaaatgactgggaatgaag
gagaagtaacaaactgaagagttgatgtaagggttgtttggttgtttttt
tgcttttgcttttcctgctaaaacactatttgaggacatttgagctccca
ctccttcatgtatgctccacaccctgacaactctgacctgctaagaagat
acttgcttttaactgttctggcttctaagggcatttacatttaagatgcc
catttgaaaagctgctcagtatatgttcaagatgcttctggagtttgggt
gaaatacctctctgtcttgaatgagggtctaaatgatgtaaaaagttcaa
gggacccttccatcctaccaccaaacaacagtagacaaacccttccatgt
ggcagactccccgaatttccaatcacccaattgacactagaaggtgtact
gatatttcatgggggtttcctttctttctttctttctttctttctttctt
tctttctttctttctttctttctttctttctttctttcttttaattagat
attttcttcatttacatttcaaatgctatcctctttcctaatttctgctc
tgaaagtcccctataccctccccagccctgctcgccaacccacccactcc
cgcttccttggccctaccattcccctgtactggggcatggaatcttcata
agaccaagggcctctcctcccaatgatggccaactaggccatcctctgct
acatatacaactagagacacaagcttctggtgtgtgtgtgtggagggggt
act
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_6494022_6494671
seq2: B6Ng01-093E15.b_35_685

seq1  GAATTCTGTCAATATCTAAAGGTGGTACTC-TGGTTTTTATTTTAGGTGC  49
      |||||||||||||||||||||||||||||| | |||||||||||||||||
seq2  GAATTCTGTCAATATCTAAAGGTGGTACTCTTTGTTTTTATTTTAGGTGC  50

seq1  ATATAATAGATTCTACGTGGGAGTCTGGGTTGGATGAAGCTTCCAAGGAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATAGATTCTACGTGGGAGTCTGGGTTGGATGAAGCTTCCAAGGAG  100

seq1  TTTGTCTGATAACAGTGAAAGAGACTGCGAGAATCAGGAGAAGGAAGCAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTGATAACAGTGAAAGAGACTGCGAGAATCAGGAGAAGGAAGCAA  150

seq1  CATTGTTGAGAGTATAACAGGCAGGGGAATTTGGTTTTGTTGCTCTTCTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTGAGAGTATAACAGGCAGGGGAATTTGGTTTTGTTGCTCTTCTG  200

seq1  AAAAATAAGCCAAGATCCACTGGTTGCAAATGCCAGAATCGGCACACATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAGCCAAGATCCACTGGTTGCAAATGCCAGAATCGGCACACATT  250

seq1  ATATTCCTGTCTCACTAGTCTCTTGTCCCTTTTGAAAAACAATAGGCAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCTGTCTCACTAGTCTCTTGTCCCTTTTGAAAAACAATAGGCAGA  300

seq1  GTAGAGACTTAGAAATGGAGATTTTAATCCCATCAAAACAAACAGGGTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGACTTAGAAATGGAGATTTTAATCCCATCAAAACAAACAGGGTTG  350

seq1  CACAACTAGGCTTTGCTGCAAGGAGAAAGGAGGCCTGAGAGGCCTGGAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTAGGCTTTGCTGCAAGGAGAAAGGAGGCCTGAGAGGCCTGGAGG  400

seq1  AACATTTGTCAGTCTGGTCTCCAGTCACTTCAGAGGGTGTCTGGAGGCAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTGTCAGTCTGGTCTCCAGTCACTTCAGAGGGTGTCTGGAGGCAC  450

seq1  CAGTCCACCATTAGCGTTTTTTTCCCTAGAAAGGAGAAAAGTCTGGTCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCACCATTAGCGTTTTTTTCCCTAGAAAGGAGAAAAGTCTGGTCCT  500

seq1  GTCCCCAACCCGTGTTTATATCTTTCTGAACTCTGAAGATAAAAATCCGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCAACCCGTGTTTATATCTTTCTGAACTCTGAAGATAAAAATCCGA  550

seq1  ATACACTGAGGCCTCTGAGGGGCTTCTCAGACATAGGGCCCTCTCTGATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTGAGGCCTCTGAGGGGCTTCTCAGACATAGGGCCCTCTCTGATA  600

seq1  TGTGATATCTTCCCCTCAGGAGCTCAGGGGGAGGAGAGGAGGGGGGTAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATATCTTCCCCTCAGGAGCTCAGGGGGAGGAGAGGAGGGGGGTAGA  650

seq1  A  650
      |
seq2  A  651

seq1: chr10_6611558_6612454
seq2: B6Ng01-093E15.g_67_969 (reverse)

seq1  AGTACCCCCTCCACACACACACACCAG-AGCTTGTGTCTCTAGTTGTATA  49
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGTACCCCCTCCACACACACACACCAGAAGCTTGTGTCTCTAGTTGTATA  50

seq1  TGTAGCAGAGGATGGCCTAGTTGGCCATCATTGGGAGGAGAGGCCCTTGG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAGAGGATGGCCTAGTTGGCCATCATTGGGAGGAGAGGCCCTTGG  100

seq1  TCTTATGAAGATTCCATGCCCCAGTACAGGGGAATGGTAGGGCC-AGGAA  148
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCTTATGAAGATTCCATGCCCCAGTACAGGGGAATGGTAGGGCCAAGGAA  150

seq1  GCGGGAGTGGGTGGGTTGGCGAGCAGGGCTGGGGAGGGTATAGGGGACTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGAGTGGGTGGGTTGGCGAGCAGGGCTGGGGAGGGTATAGGGGACTT  200

seq1  TCAGAGCAGAAATTAGGAAAGAGGATAGCATTTGAAATGTAAATGAAGAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCAGAAATTAGGAAAGAGGATAGCATTTGAAATGTAAATGAAGAA  250

seq1  AATATCTAATTA----AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  294
      ||||||||||||    ||||||||||||||||||||||||||||||||||
seq2  AATATCTAATTAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  300

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAACCCCCATGAAAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAACCCCCATGAAAT  350

seq1  ATCAGTACACCTTCTAGTGTCAATTGGGTGATTGGAAATTCGGGGAGTCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTACACCTTCTAGTGTCAATTGGGTGATTGGAAATTCGGGGAGTCT  400

seq1  GCCACATGGAAGGGTTTGTCTACTGTTGTTTGGTGGTAGGATGGAAGGGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATGGAAGGGTTTGTCTACTGTTGTTTGGTGGTAGGATGGAAGGGT  450

seq1  CCCTTGAACTTTTTACATCATTTAGACCCTCATTCAAGACAGAGAGGTAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGAACTTTTTACATCATTTAGACCCTCATTCAAGACAGAGAGGTAT  500

seq1  TTCACCCAAACTCCAGAAGCATCTTGAACATATACTGAGCAGCTTTTCAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCCAAACTCCAGAAGCATCTTGAACATATACTGAGCAGCTTTTCAA  550

seq1  ATGGGCATCTTAAATGTAAATGCCCTTAGAAGCCAGAACAGTTAAAAGCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCATCTTAAATGTAAATGCCCTTAGAAGCCAGAACAGTTAAAAGCA  600

seq1  AGTATCTTCTTAGCAGGTCAGAGTTGTCAGGGTGTGGAGCATACATGAAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTTCTTAGCAGGTCAGAGTTGTCAGGGTGTGGAGCATACATGAAG  650

seq1  GAGTGGGAGCTCAAATGTCCTCAAATAGTGTTTTAGCAGGAAAAGCAAAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGAGCTCAAATGTCCTCAAATAGTGTTTTAGCAGGAAAAGCAAAA  700

seq1  GCAAAAAAACAACCAAACAACCCTTACATCAACTCTTCAGTTTGTTACTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAAAACAACCAAACAACCCTTACATCAACTCTTCAGTTTGTTACTT  750

seq1  CTCCTTCATTCCCAGTCATTTGGGAGTACGTTTTCAAACAAGGACAAAAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCATTCCCAGTCATTTGGGAGTACGTTTTCAAACAAGGACAAAAG  800

seq1  GTTTCACAGCTCCTGCCCGCTTCCTCCTCCTCATCCTTTTCTTTCTTAAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCACAGCTCCTGCCCGCTTCCTCCTCCTCATCCTTTTCTTTCTTAAA  850

seq1  ATCAGACAGTGCAGTTGGCTGAGGGAGGTGAGCTTTTCCCTCCCCTGGAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACAGTGCAGTTGGCTGAGGGAGGTGAGCTTTTCCCTCCCCTGGAA  900

seq1  TTC  897
      |||
seq2  TTC  903