BAC Information

Click to search

BAC

Clone NameB6Ng01-093H06
Chromosome10 (Build37)
Map Location 120,865,803 - 120,971,588
singlet/doubletdoublet
Overlap geneRassf3, LOC100043500
Upstream geneHmga2, LOC100042902, Msrb3, LOC100043488, Lemd3, Wif1, LOC100042911, 4930505D03Rik, LOC100043498, Gns
Downstream geneTbk1, Xpot, D930020B18Rik, BC048403, Srgap1, EG216394, LOC668272, Tmem5, LOC100043513, LOC668275, Avpr1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093H06.bB6Ng01-093H06.g
ACCDH904941DH904942
length4111,025
definitionDH904941|Mus musculus domesticus DNA, BAC clone: B6Ng01-093H06, 5' end.DH904942|Mus musculus domesticus DNA, BAC clone: B6Ng01-093H06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,865,803 - 120,866,219)(120,970,558 - 120,971,588)
sequence
ctacctagccatgaccaaagagttcattcgaaaattggaaaacctgagct
ggagagatggctcagcggttaagagcaccgactgctcttacagaggtcct
gagttcaattcctagcaaccacatggtggctcacaaccatctgtaatgag
atctgatgccctcttctggtgtgtctgaagacagctacagtgtgctcaca
tgcataaagtaaataaatcttaaaaaaagaaaacaaaaaagaaaattgga
aaaccgtttcaagtactgggagctgaggaggaccatgggactaggatcat
gtcctttgaagtacaatatagctcatggaagagtctctgcatgaaaagaa
aagccagacattctactgttctaccaagtacaaacacaagggagggggga
aggggaggggg
gaattccactgtgtaagctgagcgtggtcttgaactcatgaccctttctc
ctcagcctcccgggtgctagttacaggctggtgacaacatactgcgtttg
aagagtgctctttatgtttttactgtgttaaagtgtatataacgcaagat
ttgccctcctttttagagacagagacggagagagagtgtgtctgtgtatc
cccggctgacctcagatgaaatccttcattctaaaggctggaattacaca
ttttaaccatttaagatacaggacttggtgacatgaatcacattaacatg
gtggtgctattgtcaattactatttttcccagaatgaacgtttttgtggt
tttttttaaaccacatttttgttttctggaaagaacaaaaacaaaacttt
ggaattttaagcgggtatggtggcgcacgcctttaatcccagcacttggg
aggcagaggcaggcagatttctgagttcgaggccaacctggtctacaaag
tgagttccaggacagccagagctatacagagaaaccctgtctcgaaaaac
caaaacaaaaacaaaaaaacctttggaatgttgaatgccactccctaatt
ttctagtttttgtttcgaaagaaattgttgtggctgaaaaacagcttagt
ggtagataatttgcctaacacatgtaagacctacgttcagttcccagaac
cgcaaaaaaattaagaaagatagactactgtcagctgctggtttctggcg
acttgatggttcgcctgccctccacgcagagatgtgttaagggctctcag
aggtcccctagagcatcactcatctcatagaggtgacaaccgaggccggg
gagttcacgctgccgctgagtgacagagccagctgagaaaaaaagactgc
tattttttgtgcggttggggatttgacaaatcctggcagcgtcactctgc
tgatcggacttcggtaaaatccgctttctcacttcagaacaccagagaag
cgtcttgcgggggtggggggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_120865803_120866219
seq2: B6Ng01-093H06.b_44_460

seq1  GAATTCCTACCTAGCCATGACCAAAGAGTTCATTCGAAAATTGGAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACCTAGCCATGACCAAAGAGTTCATTCGAAAATTGGAAAACC  50

seq1  TGAGCTGGAGAGATGGCTCAGCGGTTAAGAGCACCGACTGCTCTTACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGGAGAGATGGCTCAGCGGTTAAGAGCACCGACTGCTCTTACAGA  100

seq1  GGTCCTGAGTTCAATTCCTAGCAACCACATGGTGGCTCACAACCATCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGAGTTCAATTCCTAGCAACCACATGGTGGCTCACAACCATCTGT  150

seq1  AATGAGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTG  200

seq1  CTCACATGCATAAAGTAAATAAATCTTAAAAAAAGAAAACAAAAAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATGCATAAAGTAAATAAATCTTAAAAAAAGAAAACAAAAAAGAAA  250

seq1  ATTGGAAAACCGTTTCAAGTACTGGGAGCTGAGGAGGACCATGGGACTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAAACCGTTTCAAGTACTGGGAGCTGAGGAGGACCATGGGACTAG  300

seq1  GATCATGTCCTTTGAAGTACAATATAGCTCATGGAAGAGTCTCTGCATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGTCCTTTGAAGTACAATATAGCTCATGGAAGAGTCTCTGCATGA  350

seq1  AAAGAAAAGCCAGACATTCTACTGTTCTACCAAGTACAAACACAAGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGCCAGACATTCTACTGTTCTACCAAGTACAAACACAAGGGAG  400

seq1  GGGGGAAGGGGAGGGGG  417
      |||||||||||||||||
seq2  GGGGGAAGGGGAGGGGG  417

seq1: chr10_120970558_120971588
seq2: B6Ng01-093H06.g_68_1092 (reverse)

seq1  CCCCACCCCCCACCCCCGCAAGGACGCTTCTCTGGTGTTCTGAAGTGAGG  50
      ||||||||||||||||||||| |||||||||||||||||||||||||| |
seq2  CCCCACCCCCCACCCCCGCAA-GACGCTTCTCTGGTGTTCTGAAGTGA-G  48

seq1  AAAGCGGATTTTTACCGAAGTCCGATCAGCAGAGTGACGCTGCCAGGATT  100
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCGGA-TTTTACCGAAGTCCGATCAGCAGAGTGACGCTGCCAGGATT  97

seq1  TGGTCAAATCCCCCAACCGCAC-AAAAATAGCAGTTCTTTTTCTCTCAGC  149
      | ||||||| |||||||||||| ||||||||||| ||||||| |||||||
seq2  T-GTCAAAT-CCCCAACCGCACAAAAAATAGCAG-TCTTTTTTTCTCAGC  144

seq1  TGGCTCTGTCACTCAGCGGCAGCGTGATCTCCCCGGCCTCGGTTGTCACC  199
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGCTCTGTCACTCAGCGGCAGCGTGAACTCCCCGGCCTCGGTTGTCACC  194

seq1  TCTATGAGATGAGTGATGCTTCTAGGGGACCTCTGAGAGCCCTTAACACA  249
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCTATGAGATGAGTGATGC-TCTAGGGGACCTCTGAGAGCCCTTAACACA  243

seq1  TCTCTGCGTGGAGGGCAGGCGAACCATCAAGTCGCCAGAAACCAGCAGCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCGTGGAGGGCAGGCGAACCATCAAGTCGCCAGAAACCAGCAGCT  293

seq1  GACAGTAGTCTATCTTTCTTAATTTTTTTTGCGGTTCTGGGAACTGAACG  349
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GACAGTAGTCTATCTTTCTTAA-TTTTTTTGCGGTTCTGGGAACTGAACG  342

seq1  TAGGTCTTACATGTGTTAGGCAAATTATCTACCACTAAGCTGTTTTTCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTTACATGTGTTAGGCAAATTATCTACCACTAAGCTGTTTTTCAG  392

seq1  CCACAACAATTTCTTTCGAAAC-AAAACTAGAAAATTAGGGAGTGGCATT  448
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCACAACAATTTCTTTCGAAACAAAAACTAGAAAATTAGGGAGTGGCATT  442

seq1  CAACATTCCAAAGGTTTTTTTGTTTTTGTTTTGGTTTTTCGAGACAGGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTCCAAAGGTTTTTTTGTTTTTGTTTTGGTTTTTCGAGACAGGGT  492

seq1  TTCTCTGTATAGCTCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGTTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTATAGCTCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGTTG  542

seq1  GCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTA  592

seq1  AAGGCGTGCGCCACCATACCCGCTTAAAATTCCAAAGTTTTGTTTTTGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGTGCGCCACCATACCCGCTTAAAATTCCAAAGTTTTGTTTTTGTT  642

seq1  CTTTCCAGAAAACAAAAATGTGGTTTAAAAAAAACCACAAAAACGTTCAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAGAAAACAAAAATGTGGTTTAAAAAAAACCACAAAAACGTTCAT  692

seq1  TCTGGGAAAAATAGTAATTGACAATAGCACCACCATGTTAATGTGATTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAAAAATAGTAATTGACAATAGCACCACCATGTTAATGTGATTCA  742

seq1  TGTCACCAAGTCCTGTATCTTAAATGGTTAAAATGTGTAATTCCAGCCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCAAGTCCTGTATCTTAAATGGTTAAAATGTGTAATTCCAGCCTT  792

seq1  TAGAATGAAGGATTTCATCTGAGGTCAGCCGGGGATACACAGACACACTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGAAGGATTTCATCTGAGGTCAGCCGGGGATACACAGACACACTC  842

seq1  TCTCTCCGTCTCTGTCTCTAAAAAGGAGGGCAAATCTTGCGTTATATACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCGTCTCTGTCTCTAAAAAGGAGGGCAAATCTTGCGTTATATACA  892

seq1  CTTTAACACAGTAAAAACATAAAGAGCACTCTTCAAACGCAGTATGTTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACACAGTAAAAACATAAAGAGCACTCTTCAAACGCAGTATGTTGT  942

seq1  CACCAGCCTGTAACTAGCACCCGGGAGGCTGAGGAGAAAGGGTCATGAGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCCTGTAACTAGCACCCGGGAGGCTGAGGAGAAAGGGTCATGAGT  992

seq1  TCAAGACCACGCTCAGCTTACACAGTGGAATTC  1031
      |||||||||||||||||||||||||||||||||
seq2  TCAAGACCACGCTCAGCTTACACAGTGGAATTC  1025