BAC Information

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BAC

Clone NameB6Ng01-093H17
Chromosome10 (Build37)
Map Location 56,154,001 - 56,352,886
singlet/doubletdoublet
Overlap geneEG668347
Upstream geneLOC100041927, D630037F22Rik, 1700060H10Rik, EG629732, Gja1
Downstream geneLOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363, Hsf2, Serinc1, LOC211619, LOC668374, Pkib
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093H17.bB6Ng01-093H17.g
ACCDH904961DH904962
length1,049402
definitionDH904961|Mus musculus domesticus DNA, BAC clone: B6Ng01-093H17, 5' end.DH904962|Mus musculus domesticus DNA, BAC clone: B6Ng01-093H17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,154,001 - 56,155,056)(56,352,479 - 56,352,886)
sequence
gaattcacagagatcttcctgccactgtcagcttgcttgctgaggttaaa
gttgtgctgtgattaatttgtgggccactgtggctccttgttcttttgtg
agacagggtctcatttagcccacccaggttgaccaggaactggctgaggc
ttaccttgaattcctggtccccttccaactaggattgtaggcagacctgt
gtactaccactctggttttaatttttattttttgatgcaggggcagatcc
aggatctcctgcatgctagcctagaatttgaacaacagctgctaacattc
ttaatcaaaaatttccttagttccttctgaggtttttgttttaaaacatt
cctcctttaataatgttccattagatcatcattttcttaggttttcaacc
aaagagtgatatgtgtgtaaagtcatgttgatttccatgtggcttcatta
tgaagtgatgtttatttagatatttctgagcccaacagaagccagaaaac
actggagaataggcagttcattaaagatcgccaaggttctgtttctcaga
acaacacaacctcgaaccatagctatgagatacttggtgagctcaaaatg
accaagtcactcctgtgtaggacattctgtgcttcataaaatgtgtctct
gcagagcttcagaaacaatgaaccatctcaaccatgacctcttccactgc
ctggaggcaaaacgagtcaatggatggaacagggcctcattaaaaattga
tggtgaaagatgaacgagtgacttaagcatgggagagtttgggaaaatgt
aaagccaacaggcactggaggagaagaactagcacctacaaagctgactt
catcagtccccgaaggtcttgtcaattacgtgagaccatttttttttttt
ttggacagggtttctctgtgtagccctggctgtctggaactcactctgta
gaccaggctcgctcgaactcagaaatcacttgctctgcctccaggtgcac
taccacgtccggctgagagaccattttaataagcagcgtatctcctcca
ctttaagtaaatcccacaaaaacccatatgacctagatcatactgtcccc
ctatttaccaagaaaatgaaacaaagttctgtgacacaagcaaattggaa
ggaaaaccccccaaacaatcatttgtttttaaatgacattctaaatgggg
aggcaaagttgcctcaggcataaaaggtaaaatcagattcatttccatcc
tatcaaaataatattttaattatctcttttatttttgaaattgtaatatg
atgactttattatattattcctgcttctcttttctctctccaaactctac
catatatctctccatggtctctttaaaatttatggcttttttttcactaa
ttggttttatatgagttatatatatatatgtgtgtgtgtgtatatatata
ta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_56154001_56155056
seq2: B6Ng01-093H17.b_44_1092

seq1  GAATTCACAGAGATCTTCCTGCCACTGTCAGCTTGCTTGCTGAGGTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAGATCTTCCTGCCACTGTCAGCTTGCTTGCTGAGGTTAAA  50

seq1  GTTGTGCTGTGATTAATTTGTGGGCCACTGTGGCTCCTTGTTCTTTTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGCTGTGATTAATTTGTGGGCCACTGTGGCTCCTTGTTCTTTTGTG  100

seq1  AGACAGGGTCTCATTTAGCCCACCCAGGTTGACCAGGAACTGGCTGAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGGTCTCATTTAGCCCACCCAGGTTGACCAGGAACTGGCTGAGGC  150

seq1  TTACCTTGAATTCCTGGTCCCCTTCCAACTAGGATTGTAGGCAGACCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTGAATTCCTGGTCCCCTTCCAACTAGGATTGTAGGCAGACCTGT  200

seq1  GTACTACCACTCTGGTTTTAATTTTTATTTTTTGATGCAGGGGCAGATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTACCACTCTGGTTTTAATTTTTATTTTTTGATGCAGGGGCAGATCC  250

seq1  AGGATCTCCTGCATGCTAGCCTAGAATTTGAACAACAGCTGCTAACATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTCCTGCATGCTAGCCTAGAATTTGAACAACAGCTGCTAACATTC  300

seq1  TTAATCAAAAATTTCCTTAGTTCCTTCTGAGGTTTTTGTTTTAAAACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAAAAATTTCCTTAGTTCCTTCTGAGGTTTTTGTTTTAAAACATT  350

seq1  CCTCCTTTAATAATGTTCCATTAGATCATCATTTTCTTAGGTTTTCAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTTAATAATGTTCCATTAGATCATCATTTTCTTAGGTTTTCAACC  400

seq1  AAAGAGTGATATGTGTGTAAAGTCATGTTGATTTCCATGTGGCTTCATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTGATATGTGTGTAAAGTCATGTTGATTTCCATGTGGCTTCATTA  450

seq1  TGAAGTGATGTTTATTTAGATATTTCTGAGCCCAACAGAAGCCAGAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGATGTTTATTTAGATATTTCTGAGCCCAACAGAAGCCAGAAAAC  500

seq1  ACTGGAGAATAGGCAGTTCATTAAAGATCGCCAAGGTTCTGTTTCTCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGAATAGGCAGTTCATTAAAGATCGCCAAGGTTCTGTTTCTCAGA  550

seq1  ACAACACAACCTCGAACCATAGCTATGAGATACTTGGTGAGCTCAAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACAACCTCGAACCATAGCTATGAGATACTTGGTGAGCTCAAAATG  600

seq1  ACCAAGTCACTCCTGTGTAGGACATTCTGTGCTTCATAAAATGTGTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTCACTCCTGTGTAGGACATTCTGTGCTTCATAAAATGTGTCTCT  650

seq1  GCAGAGCTTCAGAAACAATGAACCATCTCAACCATGACCTCTTCCACTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCTTCAGAAACAATGAACCATCTCAACCATGACCTCTTCCACTGC  700

seq1  CTGGAGGCAAAACGAGTCAATGGATGGAACAGGGCCTCATTAAAAATTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGCAAAACGAGTCAATGGATGGAACAGGGCCTCATTAAAAATTGA  750

seq1  TGGTGAAAGATGAACGAGTGACTTAAGCATGGGAGAGTTT-GGAAAATGT  799
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGGTGAAAGATGAACGAGTGACTTAAGCATGGGAGAGTTTGGGAAAATGT  800

seq1  AAAGCCAACAGGCACTGGAGGAGAAGAACTAGCACCTACAAAGCTGACTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAACAGGCACTGGAGGAGAAGAACTAGCACCTACAAAGCTGACTT  850

seq1  CATCAGTCCCCGAAGGTCTTGTCAATTACGTGAGACCATTTTTTTTTTTT  899
      ||||||||||||||||||||||||||||||||||||||   |||||||||
seq2  CATCAGTCCCCGAAGGTCTTGTCAATTACGTGAGACCA---TTTTTTTTT  897

seq1  TTTTTGGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTC  949
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTTTGGACAGGGTTTCTCTGTGTAGCCCTGGCTGT-CTGGAACTCACTC  946

seq1  TGTAGACCAGGCTCGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCC  999
      ||||||||||||||| ||||||||||||||| ||| || |||||||| ||
seq2  TGTAGACCAGGCTCG-CTCGAACTCAGAAAT-CACTTG-CTCTGCCT-CC  992

seq1  AAGTGCACCACCACGCCCGGCT--GAGACCATTTTTAATAAGCAGCGTAA  1047
      | |||||| |||||| ||||||  ||||||| |||||||||||||||| |
seq2  AGGTGCACTACCACGTCCGGCTGAGAGACCA-TTTTAATAAGCAGCGT-A  1040

seq1  TCTCCTCCA  1056
      |||||||||
seq2  TCTCCTCCA  1049

seq1: chr10_56352479_56352886
seq2: B6Ng01-093H17.g_68_475 (reverse)

seq1  TATATATATATACACACACACACATATATATATATAACTCATATAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATACACACACACACATATATATATATAACTCATATAAAACC  50

seq1  AATTAGTGAAAAAAAAGCCATAAATTTTAAAGAGACCATGGAGAGATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTGAAAAAAAAGCCATAAATTTTAAAGAGACCATGGAGAGATATA  100

seq1  TGGTAGAGTTTGGAGAGAGAAAAGAGAAGCAGGAATAATATAATAAAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGAGTTTGGAGAGAGAAAAGAGAAGCAGGAATAATATAATAAAGTC  150

seq1  ATCATATTACAATTTCAAAAATAAAAGAGATAATTAAAATATTATTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATTACAATTTCAAAAATAAAAGAGATAATTAAAATATTATTTTGA  200

seq1  TAGGATGGAAATGAATCTGATTTTACCTTTTATGCCTGAGGCAACTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGGAAATGAATCTGATTTTACCTTTTATGCCTGAGGCAACTTTGC  250

seq1  CTCCCCATTTAGAATGTCATTTAAAAACAAATGATTGTTTGGGGGGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCATTTAGAATGTCATTTAAAAACAAATGATTGTTTGGGGGGTTTT  300

seq1  CCTTCCAATTTGCTTGTGTCACAGAACTTTGTTTCATTTTCTTGGTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAATTTGCTTGTGTCACAGAACTTTGTTTCATTTTCTTGGTAAAT  350

seq1  AGGGGGACAGTATGATCTAGGTCATATGGGTTTTTGTGGGATTTACTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGACAGTATGATCTAGGTCATATGGGTTTTTGTGGGATTTACTTAA  400

seq1  AGGAATTC  408
      ||||||||
seq2  AGGAATTC  408