BAC Information

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BAC

Clone NameB6Ng01-093K02
Chromosome10 (Build37)
Map Location 43,742,373 - 43,917,662
singlet/doubletdoublet
Overlap geneLOC546475, Speer5-ps1
Upstream geneSobp, 9030612E09Rik, Pdss2, LOC100042155, AK122525, LOC100042179, 1700021F05Rik, Cd24a, EG668190, LOC100041418, 1700027J07Rik, EG668192, Qrsl1, Rtn4ip1, Aim1
Downstream geneAtg5, LOC100041506, Prdm1, LOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974, Prep
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093K02.bB6Ng01-093K02.g
ACCDH905066DH905067
length3231,108
definitionDH905066|Mus musculus domesticus DNA, BAC clone: B6Ng01-093K02, 5' end.DH905067|Mus musculus domesticus DNA, BAC clone: B6Ng01-093K02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,742,373 - 43,742,695)(43,916,537 - 43,917,662)
sequence
tctggtaaacaaagtgtctttattgtctttaatgctgggtttttaatttt
atgttgttctaacaccagttttatgctttttgttttttacaaaagtataa
attacattccataaatcacatctcatgtactattgttaaaagtgcatgag
ggggtgacacgccatagaaagggtaaaaattcatccatctcactgggact
caagtgactgacacctattttcaccagtcaatctaatccagtaactatac
atcatttttgatagctgcactcacatgcaggattttgttttgtttgttta
ttttggttttttggggggggggg
gaattccctttatatttgcacctatcgatattaaaggaggcgaggtaaga
attcagatcccgggtgacctacaaactaatgattcacttgttttaagttg
aggggaactgccattcttctattaacattcactgaaattgtcctgactga
atcttcctgagatcctgagactatcatgagagaactcagaaatgtcttcc
aagtcttcaagatcagagatacagatacagatgttagatatcagcagaaa
gagagtagagagaagaggcagggaaagcagcattactattaatccaaaag
ctgcttgtgtgctacttcttatggggactgtgctctgtgtattgaagaaa
ctgctttataactaggtgtttattctcccacatcactctaatccaggccc
tgagaaaatctgtgggtttaggcataggctgcaacaatctctagcctttc
atagatgtttctaaaagtctccaaggattccatggcttcaggaaatcctt
agggtgctttgagcagacagtggtgttgctgcttgaataaggataatttc
tctagttactgctcaaggagtgtcagagaccatcccgtgagaaagtgagc
ccttcacaatctccctaacaggctaaatggccttgtactataatagtctg
attgcaaacctctaataaggcctggggaggaagcatggaaggtcccaaaa
ggcataagcctatgccagacacctgacttcggtgagtccatcatggctct
cggggtgccatccaagtttgctggaaacattaattgcaataactgatccg
aatgttgccaccccttcgtaaaagggaggttgaggagaaaaacacactca
gcattcttcatactgagtagcatttagctgtgtgtatagtagcaattgat
gcatttactaaggataaatcaattctgcggaggaggagatccagcagtaa
gtgggctgaatacagttagtcccagtgggacttaggtacagtctggtgag
actcggcttctagatatgaggattgtaaaaagagattggggccttagcat
cggcctaagaaggggtgtcttaggtactggattctgtaagtactcaaatc
ttttcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_43742373_43742695
seq2: B6Ng01-093K02.b_49_371

seq1  TCTGGTAAACAAAGTGTCTTTATTGTCTTTAATGCTGGGTTTTTAATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTAAACAAAGTGTCTTTATTGTCTTTAATGCTGGGTTTTTAATTTT  50

seq1  ATGTTGTTCTAACACCAGTTTTATGCTTTTTGTTTTTTACAAAAGTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTTCTAACACCAGTTTTATGCTTTTTGTTTTTTACAAAAGTATAA  100

seq1  ATTACATTCCATAAATCACATCTCATGTACTATTGTTAAAAGTGCATGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATTCCATAAATCACATCTCATGTACTATTGTTAAAAGTGCATGAG  150

seq1  GGGGTGACACGCCATAGAAAGGGTAAAAATTCATCCATCTCACTGGGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGACACGCCATAGAAAGGGTAAAAATTCATCCATCTCACTGGGACT  200

seq1  CAAGTGACTGACACCTATTTTCACCAGTCAATCTAATCCAGTAACTATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGACTGACACCTATTTTCACCAGTCAATCTAATCCAGTAACTATAC  250

seq1  ATCATTTTTGATAGCTGCACTCACATGCAGGATTTTGTTTTGTTTGTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTTGATAGCTGCACTCACATGCAGGATTTTGTTTTGTTTGTTTA  300

seq1  TTTTGGTTTTTTGGGGGGGGGGG  323
      |||||||||||||||||||||||
seq2  TTTTGGTTTTTTGGGGGGGGGGG  323

seq1: chr10_43916537_43917662
seq2: B6Ng01-093K02.g_68_1175 (reverse)

seq1  AATGAAAAAGATTTTGGAGTAACTTTCAGAATCCAGTTACTTAAGAACAC  50
      |||| |||||||||  |||| |||| |||||||||| ||| |||| ||||
seq2  AATG-AAAAGATTT--GAGT-ACTTACAGAATCCAG-TACCTAAG-ACAC  44

seq1  CCCATCTTTAGGGCCGGCTGCTATAGGCCCCAATCTCTTTTTACATTCCT  100
      ||| || |||||  | | ||||| ||||||||||||||||||||| ||||
seq2  CCCTTC-TTAGG--CCGATGCTA-AGGCCCCAATCTCTTTTTACAATCCT  90

seq1  CATATCCTAGAAAGCCGAGTCTTCCACAGACTGTTACCTTAGGTCCACCT  150
      ||||| |||| |||||||||| ||  ||||||| |||| || ||||  ||
seq2  CATAT-CTAG-AAGCCGAGTC-TCACCAGACTG-TACC-TAAGTCCCACT  135

seq1  GGGACT-ACTGTATTCCAGCCCACTTTACCTGCTGGATCTCCCTCCTCCG  199
      |||||| |||||||| ||||||||||   ||||||||||| |||||||||
seq2  GGGACTAACTGTATT-CAGCCCACTT--ACTGCTGGATCT-CCTCCTCCG  181

seq1  CAGAATTGATTTTATCCTTAGTAAATGCATCAATTGCTACTATACACACA  249
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTGA-TTTATCCTTAGTAAATGCATCAATTGCTACTATACACACA  230

seq1  GCT-AATGCTACTCAGTATGAAGAATGCTGAGTGTGTTTTTCTCCTCAAC  298
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATGCTACTCAGTATGAAGAATGCTGAGTGTGTTTTTCTCCTCAAC  280

seq1  CTCCCTTTTACGAAGGGGTGGCAACATTCGGATCAGTTATTGCAATTAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTTTACGAAGGGGTGGCAACATTCGGATCAGTTATTGCAATTAAT  330

seq1  GTTTCCAGCAAACTTGGATGGCACCCCGAGAGCCATGATGGACTCACCGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAGCAAACTTGGATGGCACCCCGAGAGCCATGATGGACTCACCGA  380

seq1  AGTCAGGTGTCTGGCATAGGCTTATGCCTTTTGGGACCTTCCATGCTTCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGTGTCTGGCATAGGCTTATGCCTTTTGGGACCTTCCATGCTTCC  430

seq1  TCCCCAGGCCTTATTAGAGGTTTGCAATCAGACTATTATAGTACAAGGCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGGCCTTATTAGAGGTTTGCAATCAGACTATTATAGTACAAGGCC  480

seq1  ATTTAGCCTGTTAGGGAGATTGTGAAGGGCTCACTTTCTCACGGGATGGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCCTGTTAGGGAGATTGTGAAGGGCTCACTTTCTCACGGGATGGT  530

seq1  CTCTGACACTCCTTGAGCAGTAACTAGAGAAATTATCCTTATTCAAGCAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACACTCCTTGAGCAGTAACTAGAGAAATTATCCTTATTCAAGCAG  580

seq1  CAACACCACTGTCTGCTCAAAGCACCCTAAGGATTTCCTGAAGCCATGGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACCACTGTCTGCTCAAAGCACCCTAAGGATTTCCTGAAGCCATGGA  630

seq1  ATCCTTGGAGACTTTTAGAAACATCTATGAAAGGCTAGAGATTGTTGCAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGGAGACTTTTAGAAACATCTATGAAAGGCTAGAGATTGTTGCAG  680

seq1  CCTATGCCTAAACCCACAGATTTTCTCAGGGCCTGGATTAGAGTGATGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGCCTAAACCCACAGATTTTCTCAGGGCCTGGATTAGAGTGATGTG  730

seq1  GGAGAATAAACACCTAGTTATAAAGCAGTTTCTTCAATACACAGAGCACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATAAACACCTAGTTATAAAGCAGTTTCTTCAATACACAGAGCACA  780

seq1  GTCCCCATAAGAAGTAGCACACAAGCAGCTTTTGGATTAATAGTAATGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCATAAGAAGTAGCACACAAGCAGCTTTTGGATTAATAGTAATGCT  830

seq1  GCTTTCCCTGCCTCTTCTCTCTACTCTCTTTCTGCTGATATCTAACATCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCCTGCCTCTTCTCTCTACTCTCTTTCTGCTGATATCTAACATCT  880

seq1  GTATCTGTATCTCTGATCTTGAAGACTTGGAAGACATTTCTGAGTTCTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGTATCTCTGATCTTGAAGACTTGGAAGACATTTCTGAGTTCTCT  930

seq1  CATGATAGTCTCAGGATCTCAGGAAGATTCAGTCAGGACAATTTCAGTGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATAGTCTCAGGATCTCAGGAAGATTCAGTCAGGACAATTTCAGTGA  980

seq1  ATGTTAATAGAAGAATGGCAGTTCCCCTCAACTTAAAACAAGTGAATCAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAATAGAAGAATGGCAGTTCCCCTCAACTTAAAACAAGTGAATCAT  1030

seq1  TAGTTTGTAGGTCACCCGGGATCTGAATTCTTACCTCGCCTCCTTTAATA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGTAGGTCACCCGGGATCTGAATTCTTACCTCGCCTCCTTTAATA  1080

seq1  TCGATAGGTGCAAATATAAAGGGAATTC  1126
      ||||||||||||||||||||||||||||
seq2  TCGATAGGTGCAAATATAAAGGGAATTC  1108