BAC Information

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BAC

Clone NameB6Ng01-093N03
Chromosome10 (Build37)
Map Location 12,472,086 - 12,591,596
singlet/doubletdoublet
Overlap geneUtrn, LOC665172
Upstream genenone
Downstream geneStx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475, Fuca2, Pex3, Deadc1, Aig1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093N03.bB6Ng01-093N03.g
ACCDH905200DH905201
length9931,121
definitionDH905200|Mus musculus domesticus DNA, BAC clone: B6Ng01-093N03, 5' end.DH905201|Mus musculus domesticus DNA, BAC clone: B6Ng01-093N03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,591,026 - 12,591,596)(12,472,086 - 12,473,219)
sequence
gaattcttgatcacagccaaactttgatctttttttcctcctctgtgact
cacccacacatatgcttgctcaggttgccaggtaccaaagggcctctctt
cccagtgatggccgactagtccatcttctgatacatatgcagctagagac
acgagctctgggggtactggttagttcatattgttgttccaactataggg
ttgcagaccccttcagctccttgggtgctttctctagcttctccattggg
ggccctgtgttccatcttatagatgactgtgaacatccacttctgtattt
gccaggcactggcatagcctcatatgagacagatataccagggtcccttc
atcaaaattttgctggcatatgcaatagtgtctgggtttggtggctgatt
atgggatggatccccgggtggggtagtatctgaaaagtggatattagccc
agaaacatagaacacccaagatacaatttgcaaaacacaagaaaatcaag
aagtaagaccaatgggtggatactttgttcctccttagaatagggaacaa
aatacccataaaaggagttacagagaccaagtttggaactaagactatca
tggactatccatgaagacttcttatgttggagactcagtcagttgctgaa
aggtaattgttttatgaagtttttgacttaataaatgggttaagtcactt
ggtgaatgcataattcaatggaggcggacctacttggagacagtaagtta
gtggactcatctctttggagggcaggtctttttctggacctccttctgga
tggctttctgcttcctgacagccatgaggtgtgcacactccaccacagct
tctgctactcctcagcccaaaagcaaaggccagcctcagcctgaatcgga
tgaaccgagagctaacagaagtcttacctgtcagtcacagagatggtaat
ctatacaacatgtttgatctgatagcaggaatctccaatgttt
gaattcttagcatgtatcttaaaagttcataggctctaggagggaacatg
tggcccaccacagaaacagtggggaataagctggaccctgtctctgaaat
acagctatctcttcggtttgccaccgtgttgtagacacatagattatctc
taccaactacagcaacaagcagactagatgagctcagatgccactttcga
gagacactggagacttctgaactatcaacaaagcaaagggtggacaagcc
cttgttaacagcctgtcttcgaggctcctctcctgagctcacacagagct
caatcctctctcatgtcttacgcagcaaagagaaagataagaggtcaagt
ccatagaacagaatgagttatctaggggaccgccacctactagcattcac
tttccaacgtacaacaaaataatatgtaaaagcctattataaagtgaagc
aaattccattatttccccatatcagataattgttgatatctatcagtgtc
ctttgacacaagcaggttgtgctgtacactagccacaaactttagtcatg
ttacctggtctttacacactcacttgtttgttaaaaactcaaatggaagc
tgggcatgatagtgcacgcctttaatcccagcactcgggaggcacagaca
ggcggatttctgagttcgaggtcagcctggtctacaaagtgagttccagg
acagccagggctatacagagaaaccgtctcgaaaaaacaaaacaaaacaa
aacaaaaacttcaaatggttaacccagtattattatcagttataccacaa
gcaaaaccttcatgctttctattattataaaaagtactattgaagcagaa
gagatggcttggcaattgaaatcacttgttgctcttgcagaggatccagg
tgcggttcccagtacccatgtggtgactcacagccatcacaatctagatc
caggggacccaaagccttctattgaactgttcagcagcaagatacacatg
tgtatatacatcatgcacgcaaacatcgacacataaaataatcttctctg
aaagaacatacatttcgaaaatatctgagggatttattggaatgaagatc
tccaagtcccaattcacagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_12591026_12591596
seq2: B6Ng01-093N03.b_50_620 (reverse)

seq1  GTAACTCCTTTTATGGGTATTTTGTTCCCTATTCTAAGGAGGAACAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCCTTTTATGGGTATTTTGTTCCCTATTCTAAGGAGGAACAAAGT  50

seq1  ATCCACCCATTGGTCTTACTTCTTGATTTTCTTGTGTTTTGCAAATTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCCATTGGTCTTACTTCTTGATTTTCTTGTGTTTTGCAAATTGTA  100

seq1  TCTTGGGTGTTCTATGTTTCTGGGCTAATATCCACTTTTCAGATACTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGTGTTCTATGTTTCTGGGCTAATATCCACTTTTCAGATACTACC  150

seq1  CCACCCGGGGATCCATCCCATAATCAGCCACCAAACCCAGACACTATTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCGGGGATCCATCCCATAATCAGCCACCAAACCCAGACACTATTGC  200

seq1  ATATGCCAGCAAAATTTTGATGAAGGGACCCTGGTATATCTGTCTCATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCCAGCAAAATTTTGATGAAGGGACCCTGGTATATCTGTCTCATAT  250

seq1  GAGGCTATGCCAGTGCCTGGCAAATACAGAAGTGGATGTTCACAGTCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTATGCCAGTGCCTGGCAAATACAGAAGTGGATGTTCACAGTCATC  300

seq1  TATAAGATGGAACACAGGGCCCCCAATGGAGAAGCTAGAGAAAGCACCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGATGGAACACAGGGCCCCCAATGGAGAAGCTAGAGAAAGCACCCA  350

seq1  AGGAGCTGAAGGGGTCTGCAACCCTATAGTTGGAACAACAATATGAACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTGAAGGGGTCTGCAACCCTATAGTTGGAACAACAATATGAACTA  400

seq1  ACCAGTACCCCCAGAGCTCGTGTCTCTAGCTGCATATGTATCAGAAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTACCCCCAGAGCTCGTGTCTCTAGCTGCATATGTATCAGAAGATG  450

seq1  GACTAGTCGGCCATCACTGGGAAGAGAGGCCCTTTGGTACCTGGCAACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGTCGGCCATCACTGGGAAGAGAGGCCCTTTGGTACCTGGCAACCT  500

seq1  GAGCAAGCATATGTGTGGGTGAGTCACAGAGGAGGAAAAAAAGATCAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGCATATGTGTGGGTGAGTCACAGAGGAGGAAAAAAAGATCAAAG  550

seq1  TTTGGCTGTGATCAAGAATTC  571
      |||||||||||||||||||||
seq2  TTTGGCTGTGATCAAGAATTC  571

seq1: chr10_12472086_12473219
seq2: B6Ng01-093N03.g_68_1188

seq1  GAATTCTTAGCATGTATCTTAAAAGTTCATAGGCTCTAGGAGGGAACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGCATGTATCTTAAAAGTTCATAGGCTCTAGGAGGGAACATG  50

seq1  TGGCCCACCACAGAAACAGTGGGGAATAAGCTGGACCCTGTCTCTGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCACCACAGAAACAGTGGGGAATAAGCTGGACCCTGTCTCTGAAAT  100

seq1  ACAGCTATCTCTTCGGTTTGCCACCGTGTTGTAGACACATAGATTATCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTATCTCTTCGGTTTGCCACCGTGTTGTAGACACATAGATTATCTC  150

seq1  TACCAACTACAGCAACAAGCAGACTAGATGAGCTCAGATGCCACTTTCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACTACAGCAACAAGCAGACTAGATGAGCTCAGATGCCACTTTCGA  200

seq1  GAGACACTGGAGACTTCTGAACTATCAACAAAGCAAAGGGTGGACAAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACTGGAGACTTCTGAACTATCAACAAAGCAAAGGGTGGACAAGCC  250

seq1  CTTGTTAACAGCCTGTCTTCGAGGCTCCTCTCCTGAGCTCACACAGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTAACAGCCTGTCTTCGAGGCTCCTCTCCTGAGCTCACACAGAGCT  300

seq1  CAATCCTCTCTCATGTCTTACGCAGCAAAGAGAAAGATAAGAGGTCAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTCTCTCATGTCTTACGCAGCAAAGAGAAAGATAAGAGGTCAAGT  350

seq1  CCATAGAACAGAATGAGTTATCTAGGGGACCGCCACCTACTAGCATTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGAACAGAATGAGTTATCTAGGGGACCGCCACCTACTAGCATTCAC  400

seq1  TTTCCAACGTACAACAAAATAATATGTAAAAGCCTATTATAAAGTGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAACGTACAACAAAATAATATGTAAAAGCCTATTATAAAGTGAAGC  450

seq1  AAATTCCATTATTTCCCCATATCAGATAATTGTTGATATCTATCAGTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCATTATTTCCCCATATCAGATAATTGTTGATATCTATCAGTGTC  500

seq1  CTTTGACACAAGCAGGTTGTGCTGTACACTAGCCACAAACTTTAGTCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACACAAGCAGGTTGTGCTGTACACTAGCCACAAACTTTAGTCATG  550

seq1  TTACCTGGTCTTTACACACTCACTTGTTTGTTAAAAACTCAAATGGAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGGTCTTTACACACTCACTTGTTTGTTAAAAACTCAAATGGAAGC  600

seq1  TGGGCATGATAGTGCACGCCTTTAATCCCAGCACTCGGGAGGCACAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATGATAGTGCACGCCTTTAATCCCAGCACTCGGGAGGCACAGACA  650

seq1  GGCGGATTTCTGAGTTCGAGGTCAGCCTGGTCTACAAAGTGAGTTCCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGATTTCTGAGTTCGAGGTCAGCCTGGTCTACAAAGTGAGTTCCAGG  700

seq1  ACAGCCAGGGCTATACAGAGAAACCGTCTCGAAAAAACAAAACAAAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAGGGCTATACAGAGAAACCGTCTCGAAAAAACAAAACAAAACAA  750

seq1  AACAAAAACTTCAAATGGTTAACCCAGTATTATTATCAGTTATACCACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACTTCAAATGGTTAACCCAGTATTATTATCAGTTATACCACAA  800

seq1  GCAAAACCTTCATGCTTTCTATTATTATAAAAAGTACTATTGAAGCAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACCTTCATGCTTTCTATTATTATAAAAAGTACTATTGAAGCAGAA  850

seq1  GAGATGGCTTGGCAATTGAAATCACTTGTTGCTCTTGCAGAGGATCCAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCTTGGCAATTGAAATCACTTGTTGCTCTTGCAGAGGATCCAGG  900

seq1  TGCGGTTCCCAGTACCCATGTGGTGACTCACAGCCATCCACAATTCTAGA  950
      ||||||||||||||||||||||||||||||||||||| ||||| ||||||
seq2  TGCGGTTCCCAGTACCCATGTGGTGACTCACAGCCAT-CACAA-TCTAGA  948

seq1  TCCAGGGGACCCAAAGCCCTCTTATGAACTGTTCAAGCAGCAGGAATACA  1000
      |||||||||||||||||| |||  |||||||||| ||||||| | |||||
seq2  TCCAGGGGACCCAAAGCCTTCTATTGAACTGTTC-AGCAGCAAG-ATACA  996

seq1  CATGGTGTATATACATTCATGCACGCAAAACATTCAGACACATAAAATAA  1050
      ||| ||||||||||| |||||||||| ||||||   ||||||||||||||
seq2  CAT-GTGTATATACA-TCATGCACGC-AAACAT--CGACACATAAAATAA  1041

seq1  TCTTCTCTGAAAGAACCATACATTTTCGATAATATCTGAGGGGATTTA-T  1099
      ||||||||||||||| |||||| |||||| ||||||||| |||||||| |
seq2  TCTTCTCTGAAAGAA-CATACA-TTTCGAAAATATCTGA-GGGATTTATT  1088

seq1  GGAATGAGTATCTTCCCAGTCCCAAATTCACAGAA  1134
      |||||||  ||| ||| |||||| |||||||||||
seq2  GGAATGAAGATC-TCCAAGTCCC-AATTCACAGAA  1121