BAC Information

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BAC

Clone NameB6Ng01-093N09
Chromosome10 (Build37)
Map Location 81,243,360 - 81,244,139
singlet/doubletsinglet
Overlap genenone
Upstream geneDot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944
Downstream geneEG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133, LOC100042712, B230315N10Rik, LOC100042718, EG237412, LOC666611, Gm1553, LOC544716, 1190007I07Rik, Tdg, Glt8d2, Hcfc2, Nfyb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093N09.bB6Ng01-093N09.g
ACCDH905212DH905213
length1,252783
definitionDH905212|Mus musculus domesticus DNA, BAC clone: B6Ng01-093N09, 5' end.DH905213|Mus musculus domesticus DNA, BAC clone: B6Ng01-093N09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagtgggcccagaaatgagagatgtgatcctccttttctgtttcc
ttctaaaaacacttggagtcttcatttgaatgtctgtgatatggaataaa
tgtgtggagcacctagaattatatattttcaatgaaatgtacatttacag
tacagtcagtctatttttattatgtatatgtatgggctattttaggatgc
ggtgacctatgaggatgtgtatgtgaaattcactcatgaagagtgggctt
tgctggatccttcccagaagagtctctacaaagatgtgatgctggagaca
tgcaggaacctcactgctataggtaagaatatgagttttccttcactttc
taaacaaggggacaatgtttcttggttattggtgtacttctgtgatttct
cttgtgacagaggaagaatgtagtgactaatgaaacatgattctcgggtt
taccaaagatactaacttaaaactgcatactatccaataatatatcataa
attttctggtactatattctaggctacaaattgcaagatgacaacattga
agagcactgtcccagttctagaggacgtggaaggtaaatgtcacatgtta
gctgataacaaatgcattactgaagaaattttaatgtactctgaagtttt
aaaaaagcaacaatgtaaatgagcacagatttaagtatattaaattctca
taagaccatgtcttttaatttcaggtagctgacctgtgcttgcaaggtgt
tcctctaaggaacaagacaaagaaacaatatcttaacacaggacactctt
ttagtcttagtcctgtgagaactgtgttatagaactgtcagtccatttag
tttcatccaattcaagtatcataaaaagcatgcacattgattaggggatc
agtgtacatccaagactttataagcagtagtccatagtaaagccagtctt
actcatatacttctagtgacttgccagtggtttagtggggaaagtttatg
ggatgcaagaaggtggttgtcgtggaggaactaatcctatagcaatatct
atgtggaacaaaaggttcacctatgttgtatgagatgggggaactggtta
ctctctaataggtatactctatggatcaagctgtggactaggatggaaga
gcagtacttggcagaaaggttctcaacattgaggatggttctggagaaac
tttgaatgcattcgcgtaaggtccttccgatttccgtatgactgctgaac
at
gaattcaatcttgtgagagcatcaactgttcagcagtggtaaataaagag
ataaatttatggggaacatctcttccccataaattaactgtcatctctga
tattaaggtttgaaggaacctggctgatctggggaaagagttgcaggaaa
taactgaattttaaatccccttccaaaatccaatagagaagacttgggat
atctttcttaggagcttctgagagtatcatgctgatcatataccctgaat
ttctgagcatcccttctgggatttccagtggctcctcacaatataaaaga
aagtagtcacccgggtgttactctttgaacacctgggaaaggaacatatt
gaagaacatgacagtccatggaattcttcttttttgtgattttaaaaaga
ttagaagctgggtgtggtggcgcacgcctttaatcccagcacttgggagg
cagatgcaggcagacctctgagtttgaggctagcctggtctacagagtga
gttccaggacagccagggctacacagagaaatcctgtctcgaaaaaaaaa
aacaaacaaacaaaagcaaacaaacaaatgatcagaaaaatggcttttgc
tgcaggatctatgttgagtaaatgctaccatggaattaatgggaccttta
caactaggccttccaacagctagcctcttataagtgttagattttataga
ctgtttttataatactttctaacactatacctttgcattctaaagattgt
aaaggatttccttttcttgtatgtagggcctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_81243360_81244139
seq2: B6Ng01-093N09.g_70_852 (reverse)

seq1  CCTGGCCCTACATACAAG-AAAGGAAATCCTTTACAATCTTTAGAATGCA  49
      || ||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCAGGCCCTACATACAAGAAAAGGAAATCCTTTACAATCTTTAGAATGCA  50

seq1  AAGGTATAGTG-TAGAAAGTATTATAAAAACAGTCTATAAAATCTAACAC  98
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATAGTGTTAGAAAGTATTATAAAAACAGTCTATAAAATCTAACAC  100

seq1  TTATAAGAGGCTAGCTGTTGGAAGGCCTAGTTGTAAAGGTCCCATTAATT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGAGGCTAGCTGTTGGAAGGCCTAGTTGTAAAGGTCCCATTAATT  150

seq1  CCATGGTAGCATTTACTCAACATAGATCCTGCAGCAAAAGCCATTTTTCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTAGCATTTACTCAACATAGATCCTGCAGCAAAAGCCATTTTTCT  200

seq1  GATCATTTGTTTGTTTGC-TTTGTTTGTTTGTTTTTTTTTTTCGAGACAG  247
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GATCATTTGTTTGTTTGCTTTTGTTTGTTTGTTTTTTTTTTTCGAGACAG  250

seq1  GATTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGG  300

seq1  CTAGCCTCAAACTCAGAGGTCTGCCTGCATCTGCCTCCCAAGTGCTGGGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTCAAACTCAGAGGTCTGCCTGCATCTGCCTCCCAAGTGCTGGGA  350

seq1  TTAAAGGCGTGCGCCACCACACCCAGCTTCTAATCTTTTTAAAATCACAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGCGTGCGCCACCACACCCAGCTTCTAATCTTTTTAAAATCACAA  400

seq1  AAAAGAAGAATTCCATGGACTGTCATGTTCTTCAATATGTTCCTTTCCCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGAATTCCATGGACTGTCATGTTCTTCAATATGTTCCTTTCCCA  450

seq1  GGTGTTCAAAGAGTAACACCCGGGTGACTACTTTCTTTTATATTGTGAGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTCAAAGAGTAACACCCGGGTGACTACTTTCTTTTATATTGTGAGG  500

seq1  AGCCACTGGAAATCCCAGAAGGGATGCTCAGAAATTCAGGGTATATGATC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTGGAAATCCCAGAAGGGATGCTCAGAAATTCAGGGTATATGATC  550

seq1  AGCATGATACTCTCAGAAGCTCCTAAGAAAGATATCCCAAGTCTTCTCTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGATACTCTCAGAAGCTCCTAAGAAAGATATCCCAAGTCTTCTCTA  600

seq1  TTGGATTTTGGAAGGGGATTTAAAATTCAGTTATTTCCTGCAACTCTTTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTTTGGAAGGGGATTTAAAATTCAGTTATTTCCTGCAACTCTTTC  650

seq1  CCCAGATCAGCCAGGTTCCTTCAAACCTTAATATCAGAGATGACAGTTAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATCAGCCAGGTTCCTTCAAACCTTAATATCAGAGATGACAGTTAA  700

seq1  TTTATGGGGAAGAGATGTTCCCCATAAATTTATCTCTTTATTTACCACTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGGGAAGAGATGTTCCCCATAAATTTATCTCTTTATTTACCACTG  750

seq1  CTGAACAGTTGATGCTCTCACAAGATTGAATTC  780
      |||||||||||||||||||||||||||||||||
seq2  CTGAACAGTTGATGCTCTCACAAGATTGAATTC  783