BAC Information

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BAC

Clone NameB6Ng01-093O10
Chromosome10 (Build37)
Map Location 33,837,953 - 33,949,594
singlet/doubletdoublet
Overlap geneA630077B13Rik, Dse
Upstream geneTrdn, A330019N05Rik, LOC100040686, EG215895, LOC100041399, Sult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404
Downstream geneTspyl1, Tspyl4, Nt5dc1, Col10a1, Frk, LOC667824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093O10.bB6Ng01-093O10.g
ACCDH905261DH905262
length1,009895
definitionDH905261|Mus musculus domesticus DNA, BAC clone: B6Ng01-093O10, 5' end.DH905262|Mus musculus domesticus DNA, BAC clone: B6Ng01-093O10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,837,953 - 33,838,954)(33,948,704 - 33,949,594)
sequence
gaattctccactctagtcttaatttgcagaagtaaccacatttgataatt
ttgtccttatctttatgcatgaatgagtatgtatgtgttttcaaatctgt
agataaaataaaagactctatactatcaacccaaagagttttgaagtaac
ttttggttgaggtgagttgtagagtatcaatgtgagcaaactgtgtacaa
agagtggcatagagatcattgtttagaagatgacagtgtgacattggtag
gaggctacctctgagaagtacatgtttcaaaggaaaggggtattttactt
catagttttcttccattgtaatgtttttgcctcacgtatatttttcaaaa
ctttctaacctctaaaagaaaatgtggagcacaagccaaagcaatgagga
aaatgtaatagtactcaagggtatatccacataaaaccaaactggaagat
gaaataaaggaagtgaaaacaaaactagacatggttttcaaaaacacatc
ttttagagaatggaaaagggttgaccgtgtggtctttcctgccaaaattc
ttgttatatatgacccttcacaacaggatgtccatccttgatggctagtc
ccattcaatggaatgaagaccaaataggctgacacaggactaggaaggga
ggaaagatgtggggcattgggctatacacagacagtctggtctccagtgg
agctgaggtctgaacctggagtggtgataattcacgtatatggcacggta
ggcgttccctcatgtcttctggaactctggctcctatcgaagttatcgct
cccacagccctcacagaagcgtggttagtagtcatgtagacaatgtccca
agtgtctgactttcaggctagactcctcccagttacctagcacagtaaag
atagcccaccattagaggggctgcttagctcactcactctcttactctct
actcctctctcttctctactcttctcttctctctctctctcctcatctca
ctctcccat
gaattccaggtgtttgctgcatatgtccttatagggagagaagaagttaa
agctgtaatttggccactaggctatgtgactacctcagtggtgatggagg
gggttgtgtgtgtcacaaggctatgtgcccgtgcatgcaggcccagaaca
atgagagagcaatccttactcctgcacgtctcaaggtgagattttcggag
cttggacacttctccactcttgctccaggttcccgccctgtcctcacttg
ccccacaagagagaaacttgttaaattctttgctgtaactagagtttttt
gttttctcatctctctttcctgttctgatcagttcatgttttctctctct
atcattagttactgtgcatccttccttcattaacttgagccttatgtact
caaaattaatgacagttcccagactgagcacccacactcagagaggaagg
ttaggctacacgatttgacccacacccaaccagctgcagaattcttgtcc
cctaatttgcaaaatccacattgcttattccattaacaaagctatggtag
atacagtataatgctagagagtgctttccattctctagcaaagctctgta
caggcaataacacgtttatacaacacaaagaaaccacctgtgagtttgtc
agaatttctccagattcctgttggcaggggtctctggaactccgagggct
tgtccagacttccctgcccaggaactgcgaagctcttccaggggttcaaa
cacctaaaccgagtacatctgtgctccctgcttcctcctgcacgtttcat
gagaagccctgctcttccatattcatttgagtagcactctcctgttcagt
gatacaatcagcttctctttctaatctttcacaggctggagcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_33837953_33838954
seq2: B6Ng01-093O10.b_49_1042

seq1  GAATTCTCCACTCTAGTCTTAATTTGCAGAAGTAACCACATTTGATAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCACTCTAGTCTTAATTTGCAGAAGTAACCACATTTGATAATT  50

seq1  TTGTCCTTATCTTTATGCATGAATGAGTATGTATGTGTTTTCAAATCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTTATCTTTATGCATGAATGAGTATGTATGTGTTTTCAAATCTGT  100

seq1  AGATAAAATAAAAGACTCTATACTATCAACCCAAAGAGTTTTGAAGTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAATAAAAGACTCTATACTATCAACCCAAAGAGTTTTGAAGTAAC  150

seq1  TTTTGGTTGAGGTGAGTTGTAGAGTATCAATGTGAGCAAACTGTGTACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTTGAGGTGAGTTGTAGAGTATCAATGTGAGCAAACTGTGTACAA  200

seq1  AGAGTGGCATAGAGATCATTGTTTAGAAGATGACAGTGTGACATTGGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGCATAGAGATCATTGTTTAGAAGATGACAGTGTGACATTGGTAG  250

seq1  GAGGCTACCTCTGAGAAGTACATGTTTCAAAGGAAAGGGGTATTTTACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTACCTCTGAGAAGTACATGTTTCAAAGGAAAGGGGTATTTTACTT  300

seq1  CATAGTTTTCTTCCATTGTAATGTTTTTGCCTCACGTATATTTTTCAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTTTCTTCCATTGTAATGTTTTTGCCTCACGTATATTTTTCAAAA  350

seq1  CTTTCTAACCTCTAAAAGAAAATGTGGAGCACAAGCCAAAGCAATGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAACCTCTAAAAGAAAATGTGGAGCACAAGCCAAAGCAATGAGGA  400

seq1  AAATGTAATAGTACTCAAGGGTATATCCACATAAAACCAAACTGGAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAATAGTACTCAAGGGTATATCCACATAAAACCAAACTGGAAGAT  450

seq1  GAAATAAAGGAAGTGAAAACAAAACTAGACATGGTTTTCAAAAACACATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAAGGAAGTGAAAACAAAACTAGACATGGTTTTCAAAAACACATC  500

seq1  TTTTAGAGAATGGAAAAGGGTTGACCGTGTGGTCTTTCCTGCCAAAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAGAATGGAAAAGGGTTGACCGTGTGGTCTTTCCTGCCAAAATTC  550

seq1  TTGTTATATATGACCCTTCACAACAGGATGTCCATCCTTGATGGCTAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATATATGACCCTTCACAACAGGATGTCCATCCTTGATGGCTAGTC  600

seq1  CCATTCAATGGAATGAAGACCAAATAGGCTGACACAGGACTAGGAAGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCAATGGAATGAAGACCAAATAGGCTGACACAGGACTAGGAAGGGA  650

seq1  GGAAAGATGTGGGGCATTGGGCTATACACAGACAGTCTGGTCTCCAGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGATGTGGGGCATTGGGCTATACACAGACAGTCTGGTCTCCAGTGG  700

seq1  AGCTGAGGTCTGAACCTGGAGTGGTGATAATTCACGTATATGGCACGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGGTCTGAACCTGGAGTGGTGATAATTCACGTATATGGCACGGTA  750

seq1  GGCGTTCCCTCATGTCTTCTGGAACTCTGGCTCCTATCGAAGTTATCGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTTCCCTCATGTCTTCTGGAACTCTGGCTCCTATCGAAGTTATCGCT  800

seq1  CCCACAGCCCTCACAGAAGCGTGGTTAGTAGTCATGTAGACAATGTCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGCCCTCACAGAAGCGTGGTTAGTAGTCATGTAGACAATGTCCCA  850

seq1  AGTGTCTGACCTTCAGGCTAGACTCCTCCCAGTTACCTAGCAACAGTAAA  900
      |||||||||| |||||||||||||||||||||||||||||| ||||||||
seq2  AGTGTCTGACTTTCAGGCTAGACTCCTCCCAGTTACCTAGC-ACAGTAAA  899

seq1  GATAGCCCACCATTAGAGGGGCTGCTTAGCTCCACCTCACTCTCTTACTC  950
      ||||||||||||||||||||||||||||||||   |||||||||||||||
seq2  GATAGCCCACCATTAGAGGGGCTGCTTAGCTC--ACTCACTCTCTTACTC  947

seq1  TCTTACTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTC-CTCTTCCTCTC  999
      || |||||||||  ||||| ||| | ||||| |||||| ||||  |||||
seq2  TC-TACTCCTCT--CTCTT-CTC-TACTCTT-CTCTTCTCTCTCTCTCTC  991

seq1  CTC  1002
      |||
seq2  CTC  994

seq1: chr10_33948704_33949594
seq2: B6Ng01-093O10.g_69_963 (reverse)

seq1  ACTGCTCCAGCCTGTGAAAGACTAG-AAGAGAAGCTGA-TGTATCTACTG  48
      ||||||||||||||||||||| ||| |||||||||||| |||||| ||||
seq2  ACTGCTCCAGCCTGTGAAAGATTAGAAAGAGAAGCTGATTGTATC-ACTG  49

seq1  AACAGGAGAGTGCTACTCAAATGAATATGGATGAGCAGGGCTTCTCATG-  97
      ||||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  AACAGGAGAGTGCTACTCAAATGAATATGGAAGAGCAGGGCTTCTCATGA  99

seq1  AACGTGCAGGAGGAAGCA-GGAGCACAGATGTACTCGGTTTAGGTGTTTG  146
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AACGTGCAGGAGGAAGCAGGGAGCACAGATGTACTCGGTTTAGGTGTTTG  149

seq1  AACCCCTGGAAGAGCTTCGCAGTTCCTGGGCAGGGAAGTCTGGACAAGCC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCTGGAAGAGCTTCGCAGTTCCTGGGCAGGGAAGTCTGGACAAGCC  199

seq1  CTCGGAGTTCCAGAGACCCCTGCCAACAGGAATCTGGAG-AATTCTGACA  245
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTCGGAGTTCCAGAGACCCCTGCCAACAGGAATCTGGAGAAATTCTGACA  249

seq1  AACTCACAGGTGGTTTCTTTGTGTTGTATAAACGTGTTATTGCCTGTACA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACAGGTGGTTTCTTTGTGTTGTATAAACGTGTTATTGCCTGTACA  299

seq1  GAGCTTTGCTAGAGAATGGAAAGCACTCTCTAGCATTATACTGTATCTAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTGCTAGAGAATGGAAAGCACTCTCTAGCATTATACTGTATCTAC  349

seq1  CATAGCTTTGTTAATGGAATAAGCAATGTGGATTTTGCAAATTAGGGGAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTTTGTTAATGGAATAAGCAATGTGGATTTTGCAAATTAGGGGAC  399

seq1  AAGAATTCTGCAGCTGGTTGGGTGTGGGTCAAATCGTGTAGCCTAACCTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTCTGCAGCTGGTTGGGTGTGGGTCAAATCGTGTAGCCTAACCTT  449

seq1  CCTCTCTGAGTGTGGGTGCTCAGTCTGGGAACTGTCATTAATTTTGAGTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTGAGTGTGGGTGCTCAGTCTGGGAACTGTCATTAATTTTGAGTA  499

seq1  CATAAGGCTCAAGTTAATGAAGGAAGGATGCACAGTAACTAATGATAGAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGCTCAAGTTAATGAAGGAAGGATGCACAGTAACTAATGATAGAG  549

seq1  AGAGAAAACATGAACTGATCAGAACAGGAAAGAGAGATGAGAAAACAAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAACATGAACTGATCAGAACAGGAAAGAGAGATGAGAAAACAAAA  599

seq1  AACTCTAGTTACAGCAAAGAATTTAACAAGTTTCTCTCTTGTGGGGCAAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTAGTTACAGCAAAGAATTTAACAAGTTTCTCTCTTGTGGGGCAAG  649

seq1  TGAGGACAGGGCGGGAACCTGGAGCAAGAGTGGAGAAGTGTCCAAGCTCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACAGGGCGGGAACCTGGAGCAAGAGTGGAGAAGTGTCCAAGCTCC  699

seq1  GAAAATCTCACCTTGAGACGTGCAGGAGTAAGGATTGCTCTCTCATTGTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCTCACCTTGAGACGTGCAGGAGTAAGGATTGCTCTCTCATTGTT  749

seq1  CTGGGCCTGCATGCACGGGCACATAGCCTTGTGACACACACAACCCCCTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCTGCATGCACGGGCACATAGCCTTGTGACACACACAACCCCCTC  799

seq1  CATCACCACTGAGGTAGTCACATAGCCTAGTGGCCAAATTACAGCTTTAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCACTGAGGTAGTCACATAGCCTAGTGGCCAAATTACAGCTTTAA  849

seq1  CTTCTTCTCTCCCTATAAGGACATATGCAGCAAACACCTGGAATTC  891
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTCTCCCTATAAGGACATATGCAGCAAACACCTGGAATTC  895