BAC Information

Click to search

BAC

Clone NameB6Ng01-094B03
Chromosome5 (Build37)10 (Build37)
Map Location 105,760,099 - 105,761,126104,053,903 - 104,054,363
singlet/doubletsingletsinglet
Overlap geneEG634650
Upstream geneMepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963, LOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578, Mpa2l
Downstream geneLrrc8b, Lrrc8c, Lrrc8d, LOC100042335, D830014E11Rik, LOC100042349, Zfp326, LOC626723, LOC546882, LOC671295
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094B03.bB6Ng01-094B03.g
ACCDH905385DH905386
length1,015826
definitionDH905385|Mus musculus domesticus DNA, BAC clone: B6Ng01-094B03, 5' end.DH905386|Mus musculus domesticus DNA, BAC clone: B6Ng01-094B03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(105,760,099 - 105,761,126)(104,053,903 - 104,054,363)
sequence
gaattctttattccatggggatttggggaagattttgctctgatcagctc
agtgagttctgtgacataactggcacttggctaaggaaaagggacttcat
gcacacgctctcatgattctcttattaaaataaatcatcctaaacactct
gctctgccccatcaaaagccacagagtgacagggcagggcagtgagtcca
tattcattccagagcactcaatcaaacatggtgactcagatcccagaagg
atactgcagcttctccagggaatcatggctgatggtgttcatgctgttgt
agatgaaggtgctgctcagaagcacgctgagggcaaagatccacaagtcg
ttcttaggatcaccctggaagatatgtgaaggaagagggctgagcagagc
actcctcagaagggacttgggctggtcctgtggccttcttattccatgta
ctctggggggccagaataggaggtgcacaagccctttacctgattaaaca
aaggatgtaaggtcagcctgagaaacttagtagaatctgtatcaccctac
acagaacaaaaacttcaagtagagcaaggatctcaatgtatgatcaggta
ctctgaatttcataggcaagaggaggagagaataaactggaagtcatttg
cacaggaagactttcttaacaggacacaggtcatacagaacctaagaaca
acaataaataaatagtgctttgtgaataggaaaaggtctttaacaattat
aagtctgatagatggttagtatccagaatatatacagaaaaagaaaaaaa
aaaaaaaacgacagcatgcgcttcttggcatccacaaaagtgtctgtgtt
gggtgattgtatatatgggatagatccccaggtggggcagttactggatg
gcctttgtttcagtctctgctccacactttgtctcatattgctctgtagt
aatttcttcccctgtaagctgacatagctgtctctgataggctctgcaag
catgacaatactgag
gaattctcacctgaggaataccgaatggcagagaagcattcaacatcctt
aatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacac
cagtcagaatgtctaagatcaaaaattcaggtgacagcagatgctggcga
ggatgtggagaaagaggaacactcctccattgttggtgggattgcaggct
tgtacaaccactctggaaatcagtctggcggttcctcagaaaattggaca
tagtactaccagaggatccagcaatacctctcctgggcatatatccagaa
gatgtcccaatcggtaagaaagacacatgctccactatgttcatagcagc
cttatttataatagccagaagctggaaagaacccagatgcccttcaacag
aggaatagatacagaaaatgtggtacatttacacaatggagtactactca
gctattaaaaagaatgaatttatgaaattcctagccaaatggatggacct
ggagggcatcatcctgagtgaggtaacacattcacaaaggaactcacaca
atatgtactcactgataagtggatattggcctaaaacctaggatacccaa
gatataagatacaatttgctaaacatatgaaactcaagaagaatgaagac
tgacgtgtggacactatgcccctccttagaagtgggaacaaaacacccat
ggaaagagttacagagacaaagtttggagctgagacgaaaggatggacca
tgtagagactgccatatccagggatccaccccatatcagcttcaaacgct
gacacattgcatacactagcaagatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_105760099_105761126
seq2: B6Ng01-094B03.b_44_1058

seq1  GAATTCTTTATTCCATGGGGATTTGGGGAAGATTTTGCTCTGATCAGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTCCATGGGGATTTGGGGAAGATTTTGCTCTGATCAGCTC  50

seq1  AGTGAGTTCTGTGACATAACTGGCACTTGGCTAAGGAAAAGGGACTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTTCTGTGACATAACTGGCACTTGGCTAAGGAAAAGGGACTTCAT  100

seq1  GCACACGCTCTCATGATTCTCTTATTAAAATAAATCATCCTAAACACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACGCTCTCATGATTCTCTTATTAAAATAAATCATCCTAAACACTCT  150

seq1  GCTCTGCCCCATCAAAAGCCACAGAGTGACAGGGCAGGGCAGTGAGTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCCCCATCAAAAGCCACAGAGTGACAGGGCAGGGCAGTGAGTCCA  200

seq1  TATTCATTCCAGAGCACTCAATCAAACATGGTGACTCAGATCCCAGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTCCAGAGCACTCAATCAAACATGGTGACTCAGATCCCAGAAGG  250

seq1  ATACTGCAGCTTCTCCAGGGAATCATGGCTGATGGTGTTCATGCTGTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGCAGCTTCTCCAGGGAATCATGGCTGATGGTGTTCATGCTGTTGT  300

seq1  AGATGAAGGTGCTGCTCAGAAGCACGCTGAGGGCAAAGATCCACAAGTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAGGTGCTGCTCAGAAGCACGCTGAGGGCAAAGATCCACAAGTCG  350

seq1  TTCTTAGGATCACCCTGGAAGATATGTGAAGGAAGAGGGCTGAGCAGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGGATCACCCTGGAAGATATGTGAAGGAAGAGGGCTGAGCAGAGC  400

seq1  ACTCCTCAGAAGGGACTTGGGCTGGTCCTGTGGCCTTCTTATTCCATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCAGAAGGGACTTGGGCTGGTCCTGTGGCCTTCTTATTCCATGTA  450

seq1  CTCTGGGGGGCCAGAATAGGAGGTGCACAAGCCCTTTACCTGATTAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGGGGCCAGAATAGGAGGTGCACAAGCCCTTTACCTGATTAAACA  500

seq1  AAGGATGTAAGGTCAGCCTGAGAAACTTAGTAGAATCTGTATCACCCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGTAAGGTCAGCCTGAGAAACTTAGTAGAATCTGTATCACCCTAC  550

seq1  ACAGAACAAAAACTTCAAGTAGAGCAAGGATCTCAATGTATGATCAGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACAAAAACTTCAAGTAGAGCAAGGATCTCAATGTATGATCAGGTA  600

seq1  CTCTGAATTTCATAGGCAAGAGGAGGAGAGAATAAACTGGAAGTCATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAATTTCATAGGCAAGAGGAGGAGAGAATAAACTGGAAGTCATTTG  650

seq1  CACAGGAAGACTTTCTTAACAGGACACAGGTCATACAGAACCTAAGAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAAGACTTTCTTAACAGGACACAGGTCATACAGAACCTAAGAACA  700

seq1  ACAATAAATAAATAGTGCTTTGTGAATAGGAAAAGGTCTTTAACAATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAATAAATAGTGCTTTGTGAATAGGAAAAGGTCTTTAACAATTAT  750

seq1  AAGTCTGATAGATGGTTAGTATCCAGAATATATACAGAAAAAGAAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGATAGATGGTTAGTATCCAGAATATATACAGAAAAAGAAAAAAA  800

seq1  AAAAAAAACGACAGCATGCGCTTCTTGGCATCCACAAAAGTGTCTGTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACGACAGCATGCGCTTCTTGGCATCCACAAAAGTGTCTGTGTT  850

seq1  GGGTGATTGTATATATGGGATAGATCCCCAGGTGGGGCAGTTACTGGATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGATTGTATATATGGGATAGATCCCCAGGTGGGGCAGTTACTGGATG  900

seq1  GCCTTTTGTTTTCAGTCTCTGCTCCACACTTTGTCTCCATATTTGCTCCT  950
      ||||||   ||||||||||||||||||||||||||| |||| ||||| ||
seq2  GCCTTT--GTTTCAGTCTCTGCTCCACACTTTGTCT-CATA-TTGCT-CT  945

seq1  GTTAGTAATTTCTTCCCCCTTGTAAGCCTGACATAGCTGTCTCCTGATAG  1000
      | ||||||||||||||||  |||||| ||||||||||||||| |||||||
seq2  G-TAGTAATTTCTTCCCC--TGTAAG-CTGACATAGCTGTCT-CTGATAG  990

seq1  GCTCTGCCAGAGCATGACAAATACTGAG  1028
      |||||||   |||||||| |||||||||
seq2  GCTCTGC--AAGCATGAC-AATACTGAG  1015

seq1: chr10_104053903_104054363
seq2: B6Ng01-094B03.g_69_527 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          ||||||||||||||||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      |||||||||||||||| ||||||||||||||||||||||| |||||||||
seq2  TCTATTCCTCTGTTGAAGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| ||||||||||||||||| ||||||||| |
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCTTTCTTACCGAT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      |||| |||||||||||||||||||||| |||||||||||||||||||| |
seq2  TGGGACATCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCTG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  GTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGACA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  400

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      |||||||||||||||||||||            |||||||||||||||||
seq2  CTGATGATTAAGGATGTTGAA------------TGCTTCTCTGCCATTCG  438

seq1  GTATTCCTCAGGTGAGAATTC  461
      |||||||||||||||||||||
seq2  GTATTCCTCAGGTGAGAATTC  459