BAC Information

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BAC

Clone NameB6Ng01-094F07
Chromosome10 (Build37)5 (Build37)
Map Location 43,957,726 - 43,958,73715,184,442 - 15,185,649
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePdss2, LOC100042155, AK122525, LOC100042179, 1700021F05Rik, Cd24a, EG668190, LOC100041418, 1700027J07Rik, EG668192, Qrsl1, Rtn4ip1, Aim1, LOC546475, Speer5-ps1
Downstream geneAtg5, LOC100041506, Prdm1, LOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974, Prep
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094F07.bB6Ng01-094F07.g
ACCDH905583DH905584
length1,0351,164
definitionDH905583|Mus musculus domesticus DNA, BAC clone: B6Ng01-094F07, 5' end.DH905584|Mus musculus domesticus DNA, BAC clone: B6Ng01-094F07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(43,957,726 - 43,958,737)(15,184,442 - 15,185,649)
sequence
gaattcacatggattctaaaactattttaccctcatttgagcatatgttg
ttgctgttgtatttacataactctttgcaacaaccacacaagatgtgccc
tggcaagccgtcaacctggtaactctctttctgaatttggaggacttgga
attctcaagttactaaaatttactttaatgcttaggaacgtgcccactta
ataatcattttatttatttgtgtttattggacaatgtttacataattgtg
atcatttcctcatttatgtaactaacattttttttagatttttcaaattt
ttcattttattaaaaaagagagaatcattgtctacaaattcttttatgtc
caactatgcaaatacaacagcaagcactctggaaattctatgatggttct
aacaatttcaggaatttccaacaggacacataacaagaaaaatccatata
gtacaagtcttaggtgttagctgaattttcaaatcagaaagcaaagagaa
gaatttacattttcagtaactttaggatctgtgagtgttgttaatttaaa
taccgttatgaggagtccaggtacagcaggatattaggccatgcaattgt
atagggagatacagaagctacatagtacttcaagtgttgctatcatatat
gtctaagtgacattttacagattaatgccaagtaaaatcaaaatatagtc
tcctacccattacatcttaaaacacaatgatctatcaacagttgccattt
cacagcaaaaagaaagcagtaggtataaattgaacacagaactgcttctc
ttgtaagaaatgaacacagatatatagatacatgtatacttatacagtct
ctttgaaattcaaggtggttaatttgctttactaccatataaaacaatct
cgctgtggtcaggaaaaaagctcattttccacatttaaaagtacattggg
ccaggcatggtggcgcatgcctttatcccagctctggggaggcagaggca
ggcagatttctgagtgagcagctgtctacaagtga
gaattcaccaggaaagaacaagagcccaaaagacagaggagaagtgttca
tggatgcactagccagttacctctggaagagcagctgcatggattcagga
tgcacttcatgcacactgggtgccatgctggatggctgtggaaagtcatc
tcttactaagtcctaatcaaaatgcttctagagaactccacactgagtca
gggctttctgttcccaagcaaaccacagcactgatctccatctgtttttc
tctgactcttaaaacatccttcccaattgaaaaacaaagcacaaaatcat
cttaattgccttgccaaaggattggaaaggagcaccactttttgttcaga
agacaacttcagaaaacaaatgagaagcctcaaatgggccaaaagccaca
aattgaaaaacaaaagaaaaacaaggctggctgtctactgccagcaggag
ttcaccagggagaggagctctgactccaaaatagtcactttaacattttg
tcaatgatggcaaaaggccatgggtgctggctaaaggaaggaaaggatgt
tccaggaagaaaacaggtctctttgttgcaagaactgcattctcacttgt
atccaatgctgataactggcagcagaaactctgggagggtcacatctatg
tggtgacacaagaagctttctccagggtctagcacactcttaacaaagcc
tcttgcccaggttcgctatctcatctaaatgctcactcgcattaagggac
aacatggtgtaattggaaatggacagacacatttacttatcgttttggcc
ataactggacaaggagaaagtctcagctacattccaccaggcccatagca
ctctcagaccaaatagaaagatgaaagataggaaatacacacttcagtgt
cagctgtgggcccagtttctaggagatgggacatggtcgttttctccagt
gccagagatgatgccctttgggtgggccatttcactcactgtttggtagt
tcctgcaggagtctgcttctatggccctttacagtagcgtgacaacattt
aagaaaaatcattcacaaagcagagtgatccctttgtttatttacagata
aaaacgaatattatagctagtcaggtaaagatctagtggctcattacact
tcagtgtaaggctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_43957726_43958737
seq2: B6Ng01-094F07.b_47_1060 (reverse)

seq1  ACTCAGAAATCTGCCTGCCTCTGCCACCCGAGTGCTGGGATTAAAGGTGT  50
      ||||||||||||||||||||||||| ||| || ||||||| ||||||  |
seq2  ACTCAGAAATCTGCCTGCCTCTGCCTCCCCAGAGCTGGGA-TAAAGGCAT  49

seq1  GCGCCACCACACCCGGCCAATGTGTACTTTTTAAACATGGCAAATGAGAT  100
      |||||||||  || |||| |  ||||| |||||||  ||| ||||||| |
seq2  GCGCCACCATGCCTGGCCCA-ATGTAC-TTTTAAATGTGGAAAATGAGCT  97

seq1  TTTTTCCCTGACCACAGTGAGCTTGTTTTTAATATGCTGGTAAATCAAAT  150
      ||||| ||||||||||| ||| |||||||  ||||| | ||||| |||||
seq2  TTTTT-CCTGACCACAGCGAGATTGTTTT--ATATGGTAGTAAAGCAAAT  144

seq1  TAACCACCTTGAATTTCAAAGAGAATGTATAAGTATACATATATCTATAT  200
      |||||||||||||||||||||||| ||||||||||||||| |||||||||
seq2  TAACCACCTTGAATTTCAAAGAGACTGTATAAGTATACATGTATCTATAT  194

seq1  ATCTGTGTTCATTTCTTACAAGAGAAGTAGTTCTGTGTTCAATTTATACG  250
      ||||||||||||||||||||||||||| ||||||||||||||||||||| 
seq2  ATCTGTGTTCATTTCTTACAAGAGAAGCAGTTCTGTGTTCAATTTATACC  244

seq1  TACTGATTGCTTTCTGCTATGAAATGGCAACTGTTGATAGATCATTGTGT  300
      ||||| || |||| |||| |||||||||||||||||||||||||||||||
seq2  TACTGCTTTCTTTTTGCTGTGAAATGGCAACTGTTGATAGATCATTGTGT  294

seq1  TTTAAGATGTAATGGGTAGGGGACTATATTTTGATTTTACCTGGCTTTAA  350
      |||||||||||||||||||| ||||||||||||||||||| |||| ||||
seq2  TTTAAGATGTAATGGGTAGGAGACTATATTTTGATTTTACTTGGCATTAA  344

seq1  TCTGTAAAATGTCACTTAGATATATAGTATAGCAACACTTGAAGTACTAT  400
      |||||||||||||||||||| |||||  ||||||||||||||||||||||
seq2  TCTGTAAAATGTCACTTAGACATATATGATAGCAACACTTGAAGTACTAT  394

seq1  GTAGCTTCTGTATCTCCCTATACAATTGCATGGTCTAATATCCTGCTGTA  450
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTAGCTTCTGTATCTCCCTATACAATTGCATGGCCTAATATCCTGCTGTA  444

seq1  CCTGAACTCCTCATAACTGTATTTAAATTAACAACACTCACAGATCCTAA  500
      |||| |||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCTGGACTCCTCATAACGGTATTTAAATTAACAACACTCACAGATCCTAA  494

seq1  AGTTACTGAAAATTTAAATTCTTAGCTTTACTTTCTGATTTGAAAATTCA  550
      ||||||||||||| |||||||||  |||| ||||||||||||||||||||
seq2  AGTTACTGAAAATGTAAATTCTTCTCTTTGCTTTCTGATTTGAAAATTCA  544

seq1  GTTAACACCTAAGATTTGTTCTATATTAATTTTTCTTGTTATGTGTCCTG  600
      | |||||||||||| |||| ||||||  ||||||||||||||||||||||
seq2  GCTAACACCTAAGACTTGTACTATATGGATTTTTCTTGTTATGTGTCCTG  594

seq1  TTGGAAATTCCTGAAATTGTGAGCACCATCATAGAACTTCCCAGAGTACT  650
      |||||||||||||||||||| || |||||||||||| || ||||||| ||
seq2  TTGGAAATTCCTGAAATTGTTAGAACCATCATAGAA-TTTCCAGAGTGCT  643

seq1  TGGTGCTGTATTTGCATAGTTGGACATAAAAGAATTTGTAGACAATGATT  700
      || || ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTGTATTTGCATAGTTGGACATAAAAGAATTTGTAGACAATGATT  693

seq1  CTCTCTTTTTTAATAAAA---------TGAAAAATCTGAAAAAAATGTTA  741
      ||||||||||||||||||         |||||||||| ||||||||||||
seq2  CTCTCTTTTTTAATAAAATGAAAAATTTGAAAAATCTAAAAAAAATGTTA  743

seq1  GTTACATAAATGAGGAAATGATCACAATTATGTAAACATTATCCAATAAA  791
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTTACATAAATGAGGAAATGATCACAATTATGTAAACATTGTCCAATAAA  793

seq1  CACAAATAAATAAAATGATTAATAAGTGGGCACATTCCCAAGCATTCAAG  841
      ||||||||||||||||||||| ||||||||||| |||| ||||||| |||
seq2  CACAAATAAATAAAATGATTATTAAGTGGGCACGTTCCTAAGCATTAAAG  843

seq1  TACATTTTAGCAACTTGAGAATTCCAAGTCCTCCAAATGCAGAAAGAGAG  891
      || ||||||| ||||||||||||||||||||||||||| |||||||||||
seq2  TAAATTTTAGTAACTTGAGAATTCCAAGTCCTCCAAATTCAGAAAGAGAG  893

seq1  TTACCAGGTTGACGGCTTGCCAGGACACATCTTGTGTGGTTGCTGCAAAG  941
      |||||||||||||||||||||||| ||||||||||||||||| |||||||
seq2  TTACCAGGTTGACGGCTTGCCAGGGCACATCTTGTGTGGTTGTTGCAAAG  943

seq1  AGTCATGCAAATGCAACAGCAACAACATATGCTCAAATGAGGGTAAAATA  991
      ||| ||| |||| |||||||||||||||||||||||||||||||||||||
seq2  AGTTATGTAAATACAACAGCAACAACATATGCTCAAATGAGGGTAAAATA  993

seq1  GTTTTAGAATCTATGTGAATT  1012
      ||||||||||| |||||||||
seq2  GTTTTAGAATCCATGTGAATT  1014

seq1: chr5_15184442_15185649
seq2: B6Ng01-094F07.g_69_1232 (reverse)

seq1  AAGCCTTACCCAACTCAAAAGTGTAAAATGAAACCAACTAAGATCTTTAA  50
      |||||||||   |||   ||||||  ||||  | | ||| |||||||| |
seq2  AAGCCTTAC---ACT--GAAGTGT--AATG--AGCCACT-AGATCTTT-A  39

seq1  ACTGAACTAGCTATAATTATCTGTTTTTATCCTTGGTAAATAAACAAAGG  100
       ||| ||||||||||| |||  |||||||||    ||||||||||||| |
seq2  CCTG-ACTAGCTATAA-TATTCGTTTTTATC---TGTAAATAAACAAA-G  83

seq1  GGATCACTCTGCTTTGTTTGAATGGTTTTTTCTTAAATGTTGTCACGCTT  150
      ||||||||||||||||  ||||| | ||||||||||||||||||||||| 
seq2  GGATCACTCTGCTTTG--TGAAT-GATTTTTCTTAAATGTTGTCACGCT-  129

seq1  AACTGTAAAGGGGCCATAAGAAGCAAGACTCCCTGAAGGAACTACCAAAC  200
       |||||||| ||||||| |||||| ||||| |||| ||||||||||||||
seq2  -ACTGTAAA-GGGCCAT-AGAAGC-AGACT-CCTGCAGGAACTACCAAAC  174

seq1  TGTGAGTGAAAATGGCCCACCCAAAGGGCATCATCTCTGGCACTGGAGGA  250
       ||||||| |||||||||||||||||||||||||||||||||||||| ||
seq2  AGTGAGTG-AAATGGCCCACCCAAAGGGCATCATCTCTGGCACTGGA-GA  222

seq1  AAACGACCATCTCCCATCTCCTGGAAACTGGGCCCACAGCTGACACTGAA  300
      |||||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  AAACGACCATGTCCCATCTCCTAGAAACTGGGCCCACAGCTGACACTGAA  272

seq1  GTGTGTATTTTCCATCCTTCTATTTGTGTATCTTTCATCCTTCTATTTGG  350
      |||||||||| |                ||||||||||| ||||||||||
seq2  GTGTGTATTTCC----------------TATCTTTCATCTTTCTATTTGG  306

seq1  TCTGAGAGTGCTATGGGCCTGGTGGAATGTAGCTGAGACTTTCTCCTTTT  400
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTGAGAGTGCTATGGGCCTGGTGGAATGTAGCTGAGACTTTCTCCTTGT  356

seq1  CCAGTTATGGCCAAAACTATAAGTAAATGTGTCTGTCCATTTCCAATTAC  450
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCAGTTATGGCCAAAACGATAAGTAAATGTGTCTGTCCATTTCCAATTAC  406

seq1  ACCATGTTGTCCCTTAATGCGAGTGAGCATTTAGATGAGATAGCGAACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTTGTCCCTTAATGCGAGTGAGCATTTAGATGAGATAGCGAACCT  456

seq1  GGGCAAGAGGCTTTGGTAAGAGTGTGCTAGACCCTGGAGAAAGCTTCTTG  550
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGGCAAGAGGCTTTGTTAAGAGTGTGCTAGACCCTGGAGAAAGCTTCTTG  506

seq1  TGTCACCACATATATGTGACCCTCCCAGAGTTTCTGCTGCCAGTTATCAG  600
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGTCACCACATAGATGTGACCCTCCCAGAGTTTCTGCTGCCAGTTATCAG  556

seq1  CATTGGATACAAGTGAGAATGCAGTTCTTGCAACAAAGAGACCTGTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGATACAAGTGAGAATGCAGTTCTTGCAACAAAGAGACCTGTTTTC  606

seq1  TTCCTGGAACATCCTTTCCTTCCTTTAGCCAGCACCCATGGCCTTTTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGAACATCCTTTCCTTCCTTTAGCCAGCACCCATGGCCTTTTGCC  656

seq1  ATCATTGACAAAATGTTAAAGTGACTATTTTGGAGTCAGAGCTCCTCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGACAAAATGTTAAAGTGACTATTTTGGAGTCAGAGCTCCTCTCC  706

seq1  CTGGTGAACGCCTGCTGGCAGTAGACAGCCAGCCTTGTTTTTCTTTTGTT  800
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGAACTCCTGCTGGCAGTAGACAGCCAGCCTTGTTTTTCTTTTGTT  756

seq1  TTTCAATTTGTGGCTTTTGGCCCGTTTGAGGCTTCTCTTTTGTTTTCTGA  850
      ||||||||||||||||||||||| ||||||||||||| ||||||||||||
seq2  TTTCAATTTGTGGCTTTTGGCCCATTTGAGGCTTCTCATTTGTTTTCTGA  806

seq1  AGTTGTCTTCTGAACAAAAAGTGGTGCTCCTTTCCAATCCTTTGGCAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCTTCTGAACAAAAAGTGGTGCTCCTTTCCAATCCTTTGGCAAGG  856

seq1  CAATTAAGATGATTTTGTGCTTTGTTTTTCAATTTGGAAGGATGTCTTAA  950
      |||||||||||||||||||||||||||||||||| |||||||||| ||||
seq2  CAATTAAGATGATTTTGTGCTTTGTTTTTCAATTGGGAAGGATGTTTTAA  906

seq1  GAGTCAGAGAAAAACAGATGGAGATCAGTGCTGTGGTTTGCTTGGGAACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGAGAAAAACAGATGGAGATCAGTGCTGTGGTTTGCTTGGGAACA  956

seq1  GAAAGCCCTGACTCAGTGTGGAGTTCTCTAGAAGCATTTTGATTAGGACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCCTGACTCAGTGTGGAGTTCTCTAGAAGCATTTTGATTAGGACT  1006

seq1  TAGTAAGAGATGACTTTCCACAGCCATCCAGCATGGCACCCAGTGTGCAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAGAGATGACTTTCCACAGCCATCCAGCATGGCACCCAGTGTGCAT  1056

seq1  GAAGTGCATCCTGAATCCATGCAGCTGCTCTTCCAGAGGTAACTGGCTAG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGCATCCTGAATCCATGCAGCTGCTCTTCCAGAGGTAACTGGCTAG  1106

seq1  TGCACCCATGAACACTTCTCCTCTGCCTTTTGGGCTCTTGTTCTTTCCTG  1200
      |||| |||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGCATCCATGAACACTTCTCCTCTGTCTTTTGGGCTCTTGTTCTTTCCTG  1156

seq1  GTGAATTC  1208
      ||||||||
seq2  GTGAATTC  1164